rna1339, rna1339 (mRNA) Nannochloropsis gaditana

Overview
Namerna1339
Unique Namerna1339
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4237
Alignment locationCM002457.1:388766..389167 -

Link to JBrowse

Properties
Property NameValue
Productglutathione-dependent formaldehyde-activating gfa
Orig transcript idgnl|cribi|Naga_100205g5.2994.mrna
Orig protein idgnl|cribi|Naga_100205g5.2994
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:388766..389167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100205g5gene1293Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29342.1cds1337Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1339rna1339-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1339 ID=rna1339|Name=rna1339|organism=Nannochloropsis gaditana|type=mRNA|length=4237bp
GAGTAGTAGTCAGTCGTCGGGAGTTCTACCAGCTGTTCGTGTGTCACTTT
CTCCTCGCGACACAGAGACCAGGCTTCTTAAGAAAGAAACTTGCCCGCCC
CTCGATTGTCCCCAACCATGCTGTTTTCATGCCACCATGTACATGTGCAG
CCTTAAGGCAATGTGTGGTGTCGTGCATGTAGTGGGAAGTAACGGGGCAG
GTCACAGCGTTTCAAGCTCCCCGCGTTTATTTTTTCGGTGGAACGCGAAG
GCATCATCGAGGAAGGCGGTCAATTCCGCAGAAGTTCAGTAGAACCGGTG
CATCACTGACCATGGCCATCGTTAATTATTGTGCATCATCACGTACATGA
CAGGATCGTTGAGTTTTTAAGAAGTGAGCGTGTGTGCTGCCTGCTGCAAG
CAACTGCCTCCTTCGCCCTGCCCTGACTCGCGCCTCTATCTGCCGAGTCA
CCAACAACCTTCGTCCATCGAGCTTGATTTACGCCAAGTCAAACTAGGAC
GGCGAAATTTATTCAATTATCAGTCAGCGCCTTCCTCTTCGGTAATCCTG
TATTTGAAGCATGAAAACAGCTAGCGACAGAGCCTCCATATCAAGAAGGG
CTCGGCTCCTATTCACCACGACAGCCGCCTGCGGATTGACGCTGTGCCCT
TTGGTGGGGGCATACCACCCTTCTTCTTCCACCATCCGCATGTCCACTGC
GACGTACTCGCGCTCGCGGCCCTCCATCAATCCGTACGGTGTTGGTGGAG
GCGGAGTTGAGAGCGGCCGCAAACCTGGCGGGGTGGAGTACAATCCGTTT
CGACCGACCCCTGAGGGAGGGCAAAGAGGCTCCCTGCCCCCGATGCAGCA
GGGACTGGAGGAGCTGACGCCCTTGCCGAAGCTGGCGTGCTCGATGGACA
AGATTGACGAGTACCGTGTGGAGGTGGAGAGGGTTCAGAGCCGGATCCAG
GAAGCCCTCCGGGAGGGTGATATGCCCAAGGCTCGGGCTCTGTACTACGG
CCCCCTCCAGGACGCGCTGAATCTGGACCCCCTGTACTCTTTGCAAAAGC
GCCTGGGCAAAGCCAAGGGAAAGAAGGAGAAGGCCTTCTTCAAAGTCTTG
CGGGACTTGATGCAACGTGGCAACACGCGCTTTCTGATGAGCACCAACCA
GATTGCCGTCCTTCATAAGGGAGGGAACGGGCTCGACCTGGTGGAGGGGC
AGCTCAAGTATCTGGGCCCTTCCAAGAAGAGCGTGGAGACCAAATGGAAG
CCGGAGTCGTTGGCCACCATGCTTGAGGAAGTGGCGGAGGAGATCGCCAC
CCGTCCCCCTCCCCCGCCCAGCACGAGCACGGGCTTTGGGGGCCGCCAGC
GCAAGAACGTCCCGGGAGGGAACGCGGCGGCCGCCGCCGCTGCTGCTGCG
TCCTCGTTGCAACAAGGGACGGGGAGCGGGACCGCGGGAGCGTCGGGCGA
GATGCCTTACGCCACCCAGGACGCGTCGACGAGCGGTGCGGAGGAAAAGA
CCCAGAAGCAGTTCCAAATGCCGACATGGTCCCCGGACGGGCGGTACCTG
GCCTTCACAGAGCTGTACCTGAATGCAAACGGGGTGGACACGTGCTGCTT
GGTCGTGTACAACGTGAAGGAAGGGAAGGAAGTGGCGCGCAAGACCTTGC
CCAACGCACCGCACATGATCCAGTTCATGCCCGACTCAGACGCAATCATC
TACCTGCAGAACCAGCACGACAACATATCTGTCTGCTCCATGGTCTCGGT
CCGGGAACTCATGAGCGGTCAGGAAGTGGAGCGGGTCATCGACGAAGGTA
TGCCCTTGTTCTTTGCCACCTCCAAGTACAACTCGGACCGCTACTCGCTG
GTGATGAACAACGGGAAGCGGAACGGGCTGTACCGGTATTTAGGAGACAT
GACCTTGCCTCGCAAGGCGTGGAAGCAGCTGGCTACGCACGAACGCAAGT
TTCGGTCGCCAGAGGTGGCCTCCACCGGCTTGCAGGACTCTGTCATCTTC
GTAATGGATAACTACCTGGTGGCGGCCTCTGTGGACGGGCGGTACCGGAA
GAACATCTGCCGCGTCCAAGGCTTTTGCACCCTGGCCGTGTCGCCCAACG
GGAAGCACATTGCGTTGATGGAAGAAGACGGGGCGACGGGTTTCTACAAG
ATGAGCATTATCAGCGGCAGGGACGCGACTAATCCGTACGGCGGGACGGC
CTATGTCCAGAAGACGTTGCCGATCAACAATGTGGTGGCCTCCTTCTACT
TCTCTCCGGACAGTCAGAAGCTCTTGTTGATGGTGACGACGTCGCCTTCG
CACGAATTCTCAGTGACCAGGAACACGATGAACCTGGGGGTCTCTCTAAC
CTGCAAATGGGACGTGTACATGCTGGGCTCAGGGGAAGTCCGCTCCTATG
GCATGTTCAACCCCCGGCCCTACCAGCTGAAGGCCTTCATCCCCTTCTTT
GACCAGTACCGGAACTCCCTCTCCCCCTGGTCGCCGGACTCGCAGGCATT
CTGCTACTGCCAGCGGGAGGGGGCTTTCATCCAGCGCCTCCAGAAGACTG
CGGTGCCGGAGGGCTTGAAGAAGGAGATGGACCGGATTCGCCGCGGGAAG
CCTGGTCTCATATTCTTGCCCGACATCGACGACGAGTCCTCTGCCTATGC
ACTGGGTGCGGATTTGGAGGTGCTGACCTGGTCATGGTCCTAGCCCCTTA
ACCGACAAAGCAGGGACTCCCGGCCTTGTGACAGTGGCAAGGAAAGGGCC
TGGCGACGCCTTGCAGATGCACGAGTGGGAGTGTAAGAGAGAATGGAGCA
ACTGAATTGTTATATACATAGCACTACGAAGAGACGGCGGGCGTTTAATT
AAAGACAAGAAAAGGAGAAAACGATAGGAACCCAGGATTGAAAGTTTGGA
AACGTAGGCGACGACGCGGCGAAGAAAAGGGGACATAGCATTCGATGGCG
CTGGGACCCTCGCTCTTGGATGGTGCACAGAAGCAGACCCCATGAAGATG
GCCACTCCGGATGCCATATGTAGAGCGGGAGAAGCGCGCATGGCGAGGTG
GGTCGGAGGGAGACTGCATGCACGATGCGTTGAGGGTAGAGGCGGAAGGC
CGGAGTCGATGGTGGGGACGGATATTGGCACCAGTGGATGCCTCATGTGG
GCTGAACGAGAATAGGAGGATGCGCGATACTGGTGGGTCCTTGTGCCCCT
TGTGCAGTGGGAGTGGTGTCCACGCCCGCATGCCCGAAGCTGCTTCTTAA
ATAGATAGGACAGGGCGACACCACCATGTAAACTTAAAAAGGGTCTCAGA
ATGGTAGGAGAGGAAGCAAGCACATTTGTAGATAGGAAAAAGGTCAAGAG
GGTCCAGTGACAGGTAAAGCGGAACGAGGCAGGGGCAGGATGCAAGGCGT
ATGCTGGAACTCGAGGAGGGAAGGTACGAGGGACAAAGCTTTTATTTTGT
TTTATGGCTTCCATTTTTTGCACCTCTGAGAAGGAAAAGGCCGCAGCAGT
GTTGAAATGGCAGTGACAGCACCCGTAGCAGTACTAACGGCGGCCTTCAA
ATAGCAAGAGAGCAATTGAACGTTGGAATCTATCACCATAATGGACCAGC
ATGGCGGGTGATGTGGGCCTGGAAGGACAAATCGACTTGATTAACAAACA
AGCGATGTATCGTTTAAGAGATCATTAGATTTGTCGCTATCGGAGCCTAG
ACTGGGGATATGTTGTGTGGAAGAGAGAGCTGTTGGATTGCTAGCTCTTC
CCTCCCTCGGCATCAAAGGCCCCCGAAGTGGGAAAGGAAAACTTAACATC
AGAGGAGGGCACCAGGTGGTAAAGAATAAATTCGCGTCTGATTAAGCACA
CCGCGTACACAACCTTCTCCGTCGAAGGTTGGAGAAGCTCGACAAGTATT
GTATCACAAACAAGTGAACATTTACCTAATCTCCGCAATATGAGCCTCCC
ACTCCCTCCCGTCGAATTCTTGCACGCGTCGATGTCCAGGCACTCCTCCG
TCTAAGCACCTCGCATTCACGCTGATCCCTTCCGGATGGGAGCGAGGACG
GTAGAAGGATTGCACGCCGCAAATTTTGCAGAAAAAATGAGCCGCGGTGC
GTGTATTGAATCTATACTCTGTCAGTGCTGTCTCAGCCATACATTCGAGC
TGGAAATCCGCAGCCGCAGGAACTCGAAGATGAAGGAACCCAAGCTGTGC
GCATCGACTGCAAGTACAGTTCAGGAGTGAGGTATCG
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protein sequence of rna1339

>rna1339-protein ID=rna1339-protein|Name=rna1339|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MQGTATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLR
VPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGI
SVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR
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mRNA from alignment at CM002457.1:388766..389167-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1339 ID=rna1339|Name=rna1339|organism=Nannochloropsis gaditana|type=mRNA|length=402bp|location=Sequence derived from alignment at CM002457.1:388766..389167- (Nannochloropsis gaditana)
ATGCAGGGCACGGCGACCCCGTCCACGGAAATCCTCCACGGCGGGTGCCA
CTGCGGGCAAGTTCGCTTTTCCTGCGTAGTACCCGTCGATACCTCACTCC
TGAACTGTACTTGCAGTCGATGCGCACAGCTTGGGTTCCTTCATCTTCGA
GTTCCTGCGGCTGCGGATTTCCAGCTCGAATGTATGGCTGAGACAGCACT
GACAGAGTATAGATTCAATACACGCACCGCGGCTCATTTTTTCTGCAAAA
TTTGCGGCGTGCAATCCTTCTACCGTCCTCGCTCCCATCCGGAAGGGATC
AGCGTGAATGCGAGGTGCTTAGACGGAGGAGTGCCTGGACATCGACGCGT
GCAAGAATTCGACGGGAGGGAGTGGGAGGCTCATATTGCGGAGATTAGGT
AA
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Coding sequence (CDS) from alignment at CM002457.1:388766..389167-

>rna1339 ID=rna1339|Name=rna1339|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002457.1:388766..389167- (Nannochloropsis gaditana)
ATGCAGGGCACGGCGACCCCGTCCACGGAAATCCTCCACGGCGGGTGCCA
CTGCGGGCAAGTTCGCTTTTCCTGCGTAGTACCCGTCGATACCTCACTCC
TGAACTGTACTTGCAGTCGATGCGCACAGCTTGGGTTCCTTCATCTTCGA
GTTCCTGCGGCTGCGGATTTCCAGCTCGAATGTATGGCTGAGACAGCACT
GACAGAGTATAGATTCAATACACGCACCGCGGCTCATTTTTTCTGCAAAA
TTTGCGGCGTGCAATCCTTCTACCGTCCTCGCTCCCATCCGGAAGGGATC
AGCGTGAATGCGAGGTGCTTAGACGGAGGAGTGCCTGGACATCGACGCGT
GCAAGAATTCGACGGGAGGGAGTGGGAGGCTCATATTGCGGAGATTAGGT
AA
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Synonyms
Publications