EWM29342.1, cds1337 (CDS) Nannochloropsis gaditana

Overview
NameEWM29342.1
Unique Namecds1337
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:388766..389167 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29342.1
Productglutathione-dependent formaldehyde-activating gfa
Orig transcript idgnl|cribi|Naga_100205g5.2994.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:388766..389167 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016846carbon-sulfur lyase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like
IPR006913GFA/CENP-V
Homology
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|585111869|gb|EWM29342.1| (glutathione-dependent formaldehyde-activating gfa [Nannochloropsis gaditana])

HSP 1 Score: 276.944 bits (707), Expect = 2.020e-94
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MQGTATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            MQGTATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR
Sbjct:    1 MQGTATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|1088673691|gb|OHE84136.1| (aldehyde-activating protein [Xanthomonadales bacterium RIFOXYA1_FULL_69_10] >gi|1088679007|gb|OHE88640.1| aldehyde-activating protein [Xanthomonadales bacterium RIFOXYD1_FULL_69_11])

HSP 1 Score: 140.198 bits (352), Expect = 3.656e-40
Identity = 69/123 (56.10%), Postives = 82/123 (66.67%), Query Frame = 0
Query:    8 STEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIA 130
            +T  L GGCHCG+VRF   VPV  +LL+C CS C   G+LHL VPAA+  QL+     AL EYRFNT  A H FC+ CGV+ FY PRSHP+G+SVN RCLDGGVP   RV  FD  + +   A
Sbjct:    9 ATRTLAGGCHCGRVRFEVDVPVHATLLDCNCSICRMTGYLHLIVPAASFRQLD--GSDALAEYRFNTGVARHLFCRHCGVKPFYVPRSHPDGVSVNGRCLDGGVPADARVVAFDDNDRDTATA 129          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|1086299679|emb|SDL90982.1| (Uncharacterized conserved protein [Maricaulis salignorans])

HSP 1 Score: 139.813 bits (351), Expect = 3.970e-40
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 0
Query:    4 TATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            T TP+ +  HGGCHCG VRF+ ++P +   L+C CS CA+ GF+H+  P A DF++    E  LTEYRFNT TA H+FC+ CGV++F  PRSHP+  SVN RC D       R QEFDG  WEA+IA I 
Sbjct:    2 TTTPAKKPRHGGCHCGAVRFAAILPDNVVALSCNCSICAKTGFIHVITPGA-DFRI-MHGEDMLTEYRFNTGTAKHYFCRQCGVEAFNVPRSHPDDWSVNLRCFDADAALLPRFQEFDGANWEANIANIN 129          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|746969978|gb|KIF27225.1| (aldehyde-activating protein [Aphanocapsa montana BDHKU210001])

HSP 1 Score: 137.502 bits (345), Expect = 2.945e-39
Identity = 68/125 (54.40%), Postives = 81/125 (64.80%), Query Frame = 0
Query:    9 TEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            T+  HGGCHCG VRF+  +P   + L+C CS C   GF+H+ VP A DF LE   +  LT+YRFNT TA H FCK CGV+SFYRPRSHP+  SVN RC D       R++ FDG  WEA IA I 
Sbjct:    6 TKPRHGGCHCGAVRFTADLPDQVAALSCNCSICTMTGFIHVIVPEA-DFHLESGKDN-LTDYRFNTGTAQHLFCKTCGVKSFYRPRSHPDAWSVNLRCFDADQGLSGRIEPFDGANWEASIASIN 128          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|488871550|ref|WP_002783775.1| (Similar to tr|Q7NFC1|Q7NFC1 [Microcystis aeruginosa] >gi|389790651|emb|CCI13507.1| Similar to tr|Q7NFC1|Q7NFC1 [Microcystis aeruginosa PCC 9806])

HSP 1 Score: 138.272 bits (347), Expect = 3.160e-39
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 0
Query:    4 TATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            TAT   +I  GGCHCG +RF   +  D +L +C CS C + GFLHL VP+A  F L    E  L+ Y FNT TA H+FC++CG+  FYRPRSHP+ I +N RCLDG V G  ++Q FDG  WE +I +IR
Sbjct:   24 TATTQAKIYGGGCHCGAIRFQVAIEQDQAL-DCNCSICQKKGFLHLIVPSA-QFTL-LSGEDFLSTYTFNTHTAQHYFCRVCGIHPFYRPRSHPDAIDINLRCLDGNVLGDFQIQFFDGANWEDNIEKIR 150          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|1002149552|gb|KXS90953.1| (aldehyde-activating protein [Microcystis aeruginosa NIES-88])

HSP 1 Score: 135.961 bits (341), Expect = 1.285e-38
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 0
Query:    4 TATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            TAT   +I  GGCHCG +RF   +  D +L +C CS C + GFLHL VP+A  F L    E  L+ Y FNT TA H+FC++CG+  FYRPRSHP+ I +N RCL+G V G  ++Q FDG  WE +I +IR
Sbjct:    2 TATTQAKIYGGGCHCGAIRFQVAIEQDQAL-DCNCSICQKKGFLHLIVPSAQ-FTL-LSGEDFLSTYTFNTHTAQHYFCRVCGIHPFYRPRSHPDAIDINLRCLEGNVLGDFQIQFFDGANWEDNIEKIR 128          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|718247308|dbj|GAL95514.1| (Gfa-like protein [Microcystis aeruginosa NIES-44])

HSP 1 Score: 135.961 bits (341), Expect = 1.514e-38
Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 0
Query:    4 TATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            T T   +I  GGCHCG +RF   +  D +L +C CS C + GFLHL VP+A  F L    E  L+ Y FNT TA H+FC++CG+  FYRPRSHP+ I +N RCLDG V G  ++Q FDG  WE +I +IR
Sbjct:    2 TGTTQAKIYGGGCHCGAIRFQVAIEHDQAL-DCNCSICQKKGFLHLIVPSAQ-FTL-LSGEDFLSTYTFNTHTAQHYFCRVCGIHPFYRPRSHPDAIDINLRCLDGNVLGDFQIQFFDGANWEDNIEKIR 128          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|1158728859|gb|OPF14690.1| (aldehyde-activating protein [Microcystis aeruginosa KW])

HSP 1 Score: 135.576 bits (340), Expect = 1.972e-38
Identity = 65/130 (50.00%), Postives = 84/130 (64.62%), Query Frame = 0
Query:    4 TATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            TAT   +I  GGCHCG +RF   +  D +L +C CS C + GFLHL VP+A    L    E  L+ Y FNT TA H+FC++CG+  FYRPRSHP+ I +N RCL+G V G  ++Q FDG  WE +I +IR
Sbjct:    2 TATTQAKIYGGGCHCGAIRFQVAIEHDQAL-DCNCSICQKKGFLHLIVPSAQFTLLS--GEDFLSTYTFNTHTAQHYFCRVCGIHPFYRPRSHPDAIDINLRCLEGNVLGDFQIQFFDGANWEDNIEKIR 128          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|1173246106|ref|WP_081106800.1| (aldehyde-activating protein [Microcystis aeruginosa])

HSP 1 Score: 136.346 bits (342), Expect = 2.134e-38
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 0
Query:    4 TATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            TAT   +I  GGCHCG +RF   +  D +L +C CS C + GFLHL VP+A  F L    E  L+ Y FNT TA H+FC++CG+  FYRPRSHP+ I +N RCL+G V G  ++Q FDG  WE +I +IR
Sbjct:   24 TATTQAKIYGGGCHCGAIRFQVAIEQDQAL-DCNCSICQKKGFLHLIVPSA-QFTL-LSGEDFLSTYTFNTHTAQHYFCRVCGIHPFYRPRSHPDAIDINLRCLEGNVLGDFQIQFFDGANWEDNIEKIR 150          
BLAST of EWM29342.1 vs. NCBI_GenBank
Match: gi|1172371078|ref|WP_080754349.1| (aldehyde-activating protein [Microcystis aeruginosa])

HSP 1 Score: 135.961 bits (341), Expect = 2.541e-38
Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 0
Query:    4 TATPSTEILHGGCHCGQVRFSCVVPVDTSLLNCTCSRCAQLGFLHLRVPAAADFQLECMAETALTEYRFNTRTAAHFFCKICGVQSFYRPRSHPEGISVNARCLDGGVPGHRRVQEFDGREWEAHIAEIR 133
            T T   +I  GGCHCG +RF   +  D +L +C CS C + GFLHL VP+A  F L    E  L+ Y FNT TA H+FC++CG+  FYRPRSHP+ I +N RCLDG V G  ++Q FDG  WE +I +IR
Sbjct:   24 TGTTQAKIYGGGCHCGAIRFQVAIEHDQAL-DCNCSICQKKGFLHLIVPSAQ-FTL-LSGEDFLSTYTFNTHTAQHYFCRVCGIHPFYRPRSHPDAIDINLRCLDGNVLGDFQIQFFDGANWEDNIEKIR 150          
The following BLAST results are available for this feature:
BLAST of EWM29342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111869|gb|EWM29342.1|2.020e-94100.00glutathione-dependent formaldehyde-activating gfa ... [more]
gi|1088673691|gb|OHE84136.1|3.656e-4056.10aldehyde-activating protein [Xanthomonadales bacte... [more]
gi|1086299679|emb|SDL90982.1|3.970e-4052.31Uncharacterized conserved protein [Maricaulis sali... [more]
gi|746969978|gb|KIF27225.1|2.945e-3954.40aldehyde-activating protein [Aphanocapsa montana B... [more]
gi|488871550|ref|WP_002783775.1|3.160e-3951.54Similar to tr|Q7NFC1|Q7NFC1 [Microcystis aeruginos... [more]
gi|1002149552|gb|KXS90953.1|1.285e-3850.77aldehyde-activating protein [Microcystis aeruginos... [more]
gi|718247308|dbj|GAL95514.1|1.514e-3850.77Gfa-like protein [Microcystis aeruginosa NIES-44][more]
gi|1158728859|gb|OPF14690.1|1.972e-3850.00aldehyde-activating protein [Microcystis aeruginos... [more]
gi|1173246106|ref|WP_081106800.1|2.134e-3850.77aldehyde-activating protein [Microcystis aeruginos... [more]
gi|1172371078|ref|WP_080754349.1|2.541e-3850.77aldehyde-activating protein [Microcystis aeruginos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1339rna1339Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications