rna1335, rna1335 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1335
Unique Name	rna1335
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1410
Alignment location	CM002457.1:378716..381314 +

Link to JBrowse

Properties


Property Name	Value
Product	rab proteins geranylgeranyltransferase component a 2
Orig transcript id	gnl\|cribi\|Naga_100205g11.2991.mrna
Orig protein id	gnl\|cribi\|Naga_100205g11.2991
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:378716..381314 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100205g11	gene1289	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1335	rna1335-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29339.1	cds1333	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:378716..381314+
coding sequence from alignment at CM002457.1:378716..381314+

mRNA sequence

>rna1335 ID=rna1335|Name=rna1335|organism=Nannochloropsis gaditana|type=mRNA|length=1410bp
ATGAGGAAGCAGCTGTGCGCAACCACGAGGAGGGAACTCTGGCGCTGCAG
GGGGCGGATTCGTACAAGGCATTTTCAACCTCCTCATCTCTCAGCTATGC
TTCAGCGCGCCGCCCTTACTACCATGACTGAGACCGCGAATATGGCCACA
AACAAGGGTCCTTTGGACGGGTTGCGTGTACTTGATCTGACGCGCGTGCT
TGCAGGGCCATTTGCCACCATGGCATTGGGTGACTTAGGTGCAGATGTAA
TTAAGATCGAGCATCCTGGTCGTGGGGACGATACCCGGCATTGGGGTCCA
CCTTTCATTCAAGGAGAGGCCGCATACTATTTGTGTGTAAATCGTAACAA
ACGCAGTGTTGCTGTAGATTTCAAGCGACCCAAGGGACTAGAGATCCTGC
GGCGTCTTGCGGCAAAGAGCGACGTATTCATCGAAAATTTTCTGCCGGGG
AAACTGGAGTCGGTTGGCTTGGGGTACCAGGCGTTATCGGAATTAAACCC
CGGATTAATTTATTGCAGTATAACGGGCTATGGAAGCGATGGGCCTGCTG
CACACCGTCCCGGCTACGACGTCATTACGCAGGGCATGTACGGGCTCATG
TCCATCACAGGGTCGCCCTCCGACGAGGGGGGGGAGCCCGCTAAAACAGG
GGTCGCGATGGTTGATCTGGCGACTGGTTTGTTCGCGCACGGCGCTATTC
TTGCCGCACTCCACAGCCGTCACCGAACAGGCCGGGGGCAGAAAGTCGAC
TGCTCCTTGATGGAGACCCAGTTGGCCTGCCTTGTCAACATTGGGCAGAA
CTGGCTCGTGGGGGCGACCAAGGAGGCAAAGACATGGGGGACCGCGCATG
AGAGCATTGTGCCATATCAGGCTTTCTCATGCAAAGATGGGAAGTACATG
GTGGGGGCCGGAAACGATAAGCAGTTTGAGAAGCTGGCAAACGCCGTCGG
GATGCCTCAATTATGCAACGACCCTCGTTTTGGGACGAATAGAGACCGAG
CGCAAAATCGCAAGGCCCTGATAGGAATTCTGGAGACGTATTTTCTTACG
AAAACACGCACGGAGCTCGATGAACTTTTTGAGGCAATCGGTGGGTTACC
TTGTGGACCTTTGCGTAACATTGGCGAAGCTTTTCAAGACGAACAAGCCC
AGCACCGTGGTATGGTTGTGAAAGTCGCTCATCCAACGATTGGGGATCTA
CCTTTGGCCGGCATTCCTGTCAAATATTCAGGGACAAAACCGTCCATCCG
CTCTGCGCCCCCTTTGCTGGGTCAAGACACAAAGGACGTATTACAGTCCT
TTTTGAAGTATACGGCAGAGGAGGTTGAAGAAATGGAAAGAGAAAAGGTT
ATTTCCTGCTACCATGCCAGACAGTGTAGTGAGAAGTCTACACAATTTAA
AGGAAGATAA

protein sequence of rna1335

>rna1335-protein ID=rna1335-protein|Name=rna1335|organism=Nannochloropsis gaditana|type=polypeptide|length=810bp
MSIDPREDGLEHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGG
EDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDTPCVLRRRWP
ARRWRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCLMVLLPGHDS
VSTRVIQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEE
GKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLE
FRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAF
HPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEV
ELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHAL
ALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMY
GGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIK
CEHVVLGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLVRRVVLLDCAP
AALSWKTGGMGGGPGDDQAEEGARTETGTCGGVMPPGTVPGCSGDHPGHS
HPAVHFYCVDPAARCSPPGTFILYLATISSSRSSEGEGGNSDETSTAAAR
LLKAATCILIDSPGEHVLWAVTYEQPLGGLSYPEGKEACGEIPSGPPPPC
ASSPPSPSVAKNVLTVERIAPEFYLDSPLKQARHLFESICPGEAFLPAEV
PEGVLPFDVATTDGGDDHEEALLEEAMTSLNLQKKTYPANEVTGTGRGHG
LEHKKEERNT

mRNA from alignment at CM002457.1:378716..381314+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1335 ID=rna1335|Name=rna1335|organism=Nannochloropsis gaditana|type=mRNA|length=2599bp|location=Sequence derived from alignment at CM002457.1:378716..381314+ (Nannochloropsis gaditana)
TGCAGGATAATATAGTAGATGCAACGCGCTCAATCTCAATCTCATCACAA
TGACATAGAAGATAGAGATGTCTATTGATCccagggaggacggcttggaG
CATCAGTACGATGTTATAATCATCGGTACCGGTTTGGTAGAGGCGATACT
TTCAGCGTAAGTTTACAGAATGCTCCCCTTTATAGAATAAGAGTGACTTT
TCCAAAAAATATCTCACAACCTGTCAACTACAGTGCGTTGACAAAAGTGG
GCAAAAGCGTTCTCAACTACGAAAAATACGATTAttacgggggagaggac
tgGCCTTCCTTTCATTTGGAAGCCCTGCAAGCCTGGGCGAAAGCACATCG
TAAATCACAAGATCCAGCAGGATCCGCCCGAGCAGTAGCACCAACACAGG
CAAAGCTTTGGGATACTCCTTGTGTTTTACGAAGGCGATGGCCCGCAAGG
CGGTGGCGTGCTGCGGGAGGGATAGATCGGGGGGatcgggaggaaggtga
gaaggaggagggtagcGGCGAGGGAACAGACCCTCCTATCGATGAAGACG
CACCCTCGAAATGCTTGATGgttctccttcctggccacGATTCCGTCTCG
ACTCGTGTGATTCAAATAGACGAGAATCTGCCCCCACGGGGGCGAGCGGG
AGCCGAGGAAGGCCCATTCCATACGACCGACGGTCCCACTTCAGCCCCCC
CAAgggcctttccctcttcttctctacCTGCGCAAgcagaagaggggaag
gggaataCAAAGACGTGCTGGGATGCGGAATCTCTCATTGCACGCTCGCG
CGACTTCAACCTTGACTTGTCTCCCGTGGTGCTCATGGCGGGGGGCGACA
TgatcgcccccctcctctcttcggGCGTGGCCAGCTACCTTGAGTTCCGA
CCCCTTTACGCCTTGTTCATCGCATCGCCGtctgcctccgccatccGTCC
CTCATGGAAAGGCACCCACCAATCCGAAGCCTCAGAAAGTGCCAGCACAG
GCGAGAATTCGAGCGGTCCCGGCGTCTCCCGCTCAGTGGCTTTTCACCCG
GTTCCTTGCTCCAAACCCGACGtattctcctcccacctgcTGCCTGCCAA
AGAGAAACGGCAACTGATGAAATTTCTTCAAGCGGTCGCAGACTGGGGCT
TTCGCGCTCAAAGTGGAAAAAGTGCGCAGCACCGAAACGAAGTCGAGTTG
GGCCAAGCGCGTTCCCTGCAGCGGCCCCAGAATAAAGTCAGCGTGGAACT
GGAAACAGACGCCTACTTACAACGACCATTGAGAGATTTCTTGGAACATA
GTAAGATGGATGAGCACCTGCAGTGGGTCGTCTGGCATGCCCTTGCCTTG
CTTCTGGGtccaggggagggagggcgggagggcggggacgagggcgagcg
gCAAGTCACGACCGAGGAAGGGCTACGACGGATTTGGGGCCACTTGCAAG
GCTTGGGTCAGTACGGGAAGACCGCTTTTTTGTGGCCGATgtacggagga
ggagatcttACGCAGGCCTTTTCTCGCATGTCCTCCGTGTGGGGCGGCAC
CTACCTCTTACGGGATCAACCGGCGCAACTCGCCGTGCACCCAGAAACAG
GAAACTGCCTCGGCGTCTtggacaggaagggagcggcGATCAAGTGCGAG
CATGTCGTTTTGGGACAAGGGAACATGccggcgggatggaggggaagacg
gcggaggggcggggtggaCCTCCGCCTGGgcccggaaggaggaagtgggg
ggcGATCACTCGTGCGTCGGGTGGTGCTACTGGACTGTGCTCCTGCCGCC
TTGTCgtggaagacgggagggatgggaggggggcctggTGATGAccaagc
ggaggagggcgctcGCACGGAGACAGGAACTTGTGGTGGGGTTATGCCAC
CAGGGACGGTACCAGGCTGCTCAGGTGACCATCCCGGCCACTCCCACCCC
GCGGTTCACTTCTATTGTGTCGATCCTGCCGCCCGATGCTCCCCTCCGGG
TACCTTTATCCTCTACCTGGCCACCATCAGCTCGAGCCGCAgcagcgaag
gagagggtgggaactCAGATGAGACGAGCACGGCGGCCGCCCGACTCTTG
AAAGCTGCCACTTGCATCCTGATTGACTCCCCTGGAGAGCACGTCTTATG
GGCTGTCACCTACGAACAACCTCTGGGTGGCTTGTCCTAcccggagggga
aggaggcatgtgGGGAAATTCCTTCGGGGCCCCCACCCCCGTGtgcctcg
tcccccccgtctccctccgtcgccaAGAACGTCCTGACCGTCGAACGCAT
AGCTCCTGAATTCTACTTGGACTCACCCTTGAAGCAAGCACGGCATCTCT
TTGAATCTATTTGTCCAGGAGAAGCTTTTCTACCGGCCGAGGTTCCCGAG
GGAGTGCTGCCCTTCGATGTCGCAACTACGGACGGAGGAGATGACCATGA
AGAAGCCCTACTAGAGGAAGCCATGACATCGCTTAACTTGCAGAAGAAAA
CTTATCCTGCGAACGAGGTGACGGGAACCGGAAGGGGGCATGGGTTAGAG
cacaagaaagaggaaaggaataCTTAAATGAAAAAGCGACAGTTATGAT

Coding sequence (CDS) from alignment at CM002457.1:378716..381314+

>rna1335 ID=rna1335|Name=rna1335|organism=Nannochloropsis gaditana|type=CDS|length=4866bp|location=Sequence derived from alignment at CM002457.1:378716..381314+ (Nannochloropsis gaditana)
ATGTCTATTGATCccagggaggacggcttggaGCATCAGTACGATGTTAT
AATCATCGGTACCGGTTTGGTAGAGGCGATACTTTCAGCTGCGTTGACAA
AAGTGGGCAAAAGCGTTCTCAACTACGAAAAATACGATTAttacggggga
gaggactgGCCTTCCTTTCATTTGGAAGCCCTGCAAGCCTGGGCGAAAGC
ACATCGTAAATCACAAGATCCAGCAGGATCCGCCCGAGCAGTAGCACCAA
CACAGGCAAAGCTTTGGGATACTCCTTGTGTTTTACGAAGGCGATGGCCC
GCAAGGCGGTGGCGTGCTGCGGGAGGGATAGATCGGGGGGatcgggagga
aggtgagaaggaggagggtagcGGCGAGGGAACAGACCCTCCTATCGATG
AAGACGCACCCTCGAAATGCTTGATGgttctccttcctggccacGATTCC
GTCTCGACTCGTGTGATTCAAATAGACGAGAATCTGCCCCCACGGGGGCG
AGCGGGAGCCGAGGAAGGCCCATTCCATACGACCGACGGTCCCACTTCAG
CCCCCCCAAgggcctttccctcttcttctctacCTGCGCAAgcagaagag
gggaaggggaataCAAAGACGTGCTGGGATGCGGAATCTCTCATTGCACG
CTCGCGCGACTTCAACCTTGACTTGTCTCCCGTGGTGCTCATGGCGGGGG
GCGACATgatcgcccccctcctctcttcggGCGTGGCCAGCTACCTTGAG
TTCCGACCCCTTTACGCCTTGTTCATCGCATCGCCGtctgcctccgccat
ccGTCCCTCATGGAAAGGCACCCACCAATCCGAAGCCTCAGAAAGTGCCA
GCACAGGCGAGAATTCGAGCGGTCCCGGCGTCTCCCGCTCAGTGGCTTTT
CACCCGGTTCCTTGCTCCAAACCCGACGtattctcctcccacctgcTGCC
TGCCAAAGAGAAACGGCAACTGATGAAATTTCTTCAAGCGGTCGCAGACT
GGGGCTTTCGCGCTCAAAGTGGAAAAAGTGCGCAGCACCGAAACGAAGTC
GAGTTGGGCCAAGCGCGTTCCCTGCAGCGGCCCCAGAATAAAGTCAGCGT
GGAACTGGAAACAGACGCCTACTTACAACGACCATTGAGAGATTTCTTGG
AACATAGTAAGATGGATGAGCACCTGCAGTGGGTCGTCTGGCATGCCCTT
GCCTTGCTTCTGGGtccaggggagggagggcgggagggcggggacgaggg
cgagcggCAAGTCACGACCGAGGAAGGGCTACGACGGATTTGGGGCCACT
TGCAAGGCTTGGGTCAGTACGGGAAGACCGCTTTTTTGTGGCCGATgtac
ggaggaggagatcttACGCAGGCCTTTTCTCGCATGTCCTCCGTGTGGGG
CGGCACCTACCTCTTACGGGATCAACCGGCGCAACTCGCCGTGCACCCAG
AAACAGGAAACTGCCTCGGCGTCTtggacaggaagggagcggcGATCAAG
TGCGAGCATGTCGTTTTGGGACAAGGGAACATGccggcgggatggagggg
aagacggcggaggggcggggtggaCCTCCGCCTGGgcccggaaggaggaa
gtggggggcGATCACTCGTGCGTCGGGTGGTGCTACTGGACTGTGCTCCT
GCCGCCTTGTCgtggaagacgggagggatgggaggggggcctggTGATGA
ccaagcggaggagggcgctcGCACGGAGACAGGAACTTGTGGTGGGGTTA
TGCCACCAGGGACGGTACCAGGCTGCTCAGGTGACCATCCCGGCCACTCC
CACCCCGCGGTTCACTTCTATTGTGTCGATCCTGCCGCCCGATGCTCCCC
TCCGGGTACCTTTATCCTCTACCTGGCCACCATCAGCTCGAGCCGCAgca
gcgaaggagagggtgggaactCAGATGAGACGAGCACGGCGGCCGCCCGA
CTCTTGAAAGCTGCCACTTGCATCCTGATTGACTCCCCTGGAGAGCACGT
CTTATGGGCTGTCACCTACGAACAACCTCTGGGTGGCTTGTCCTAcccgg
aggggaaggaggcatgtgGGGAAATTCCTTCGGGGCCCCCACCCCCGTGt
gcctcgtcccccccgtctccctccgtcgccaAGAACGTCCTGACCGTCGA
ACGCATAGCTCCTGAATTCTACTTGGACTCACCCTTGAAGCAAGCACGGC
ATCTCTTTGAATCTATTTGTCCAGGAGAAGCTTTTCTACCGGCCGAGGTT
CCCGAGGGAGTGCTGCCCTTCGATGTCGCAACTACGGACGGAGGAGATGA
CCATGAAGAAGCCCTACTAGAGGAAGCCATGACATCGCTTAACTTGCAGA
AGAAAACTTATCCTGCGAACGAGGTGACGGGAACCGGAAGGGGGCATGGG
TTAGAGcacaagaaagaggaaaggaataCTTAAATGTCTATTGATCccag
ggaggacggcttggaGCATCAGTACGATGTTATAATCATCGGTACCGGTT
TGGTAGAGGCGATACTTTCAGCTGCGTTGACAAAAGTGGGCAAAAGCGTT
CTCAACTACGAAAAATACGATTAttacgggggagaggactgGCCTTCCTT
TCATTTGGAAGCCCTGCAAGCCTGGGCGAAAGCACATCGTAAATCACAAG
ATCCAGCAGGATCCGCCCGAGCAGTAGCACCAACACAGGCAAAGCTTTGG
GATACTCCTTGTGTTTTACGAAGGCGATGGCCCGCAAGGCGGTGGCGTGC
TGCGGGAGGGATAGATCGGGGGGatcgggaggaaggtgagaaggaggagg
gtagcGGCGAGGGAACAGACCCTCCTATCGATGAAGACGCACCCTCGAAA
TGCTTGATGgttctccttcctggccacGATTCCGTCTCGACTCGTGTGAT
TCAAATAGACGAGAATCTGCCCCCACGGGGGCGAGCGGGAGCCGAGGAAG
GCCCATTCCATACGACCGACGGTCCCACTTCAGCCCCCCCAAgggccttt
ccctcttcttctctacCTGCGCAAgcagaagaggggaaggggaataCAAA
GACGTGCTGGGATGCGGAATCTCTCATTGCACGCTCGCGCGACTTCAACC
TTGACTTGTCTCCCGTGGTGCTCATGGCGGGGGGCGACATgatcgccccc
ctcctctcttcggGCGTGGCCAGCTACCTTGAGTTCCGACCCCTTTACGC
CTTGTTCATCGCATCGCCGtctgcctccgccatccGTCCCTCATGGAAAG
GCACCCACCAATCCGAAGCCTCAGAAAGTGCCAGCACAGGCGAGAATTCG
AGCGGTCCCGGCGTCTCCCGCTCAGTGGCTTTTCACCCGGTTCCTTGCTC
CAAACCCGACGtattctcctcccacctgcTGCCTGCCAAAGAGAAACGGC
AACTGATGAAATTTCTTCAAGCGGTCGCAGACTGGGGCTTTCGCGCTCAA
AGTGGAAAAAGTGCGCAGCACCGAAACGAAGTCGAGTTGGGCCAAGCGCG
TTCCCTGCAGCGGCCCCAGAATAAAGTCAGCGTGGAACTGGAAACAGACG
CCTACTTACAACGACCATTGAGAGATTTCTTGGAACATAGTAAGATGGAT
GAGCACCTGCAGTGGGTCGTCTGGCATGCCCTTGCCTTGCTTCTGGGtcc
aggggagggagggcgggagggcggggacgagggcgagcggCAAGTCACGA
CCGAGGAAGGGCTACGACGGATTTGGGGCCACTTGCAAGGCTTGGGTCAG
TACGGGAAGACCGCTTTTTTGTGGCCGATgtacggaggaggagatcttAC
GCAGGCCTTTTCTCGCATGTCCTCCGTGTGGGGCGGCACCTACCTCTTAC
GGGATCAACCGGCGCAACTCGCCGTGCACCCAGAAACAGGAAACTGCCTC
GGCGTCTtggacaggaagggagcggcGATCAAGTGCGAGCATGTCGTTTT
GGGACAAGGGAACATGccggcgggatggaggggaagacggcggaggggcg
gggtggaCCTCCGCCTGGgcccggaaggaggaagtggggggcGATCACTC
GTGCGTCGGGTGGTGCTACTGGACTGTGCTCCTGCCGCCTTGTCgtggaa
gacgggagggatgggaggggggcctggTGATGAccaagcggaggagggcg
ctcGCACGGAGACAGGAACTTGTGGTGGGGTTATGCCACCAGGGACGGTA
CCAGGCTGCTCAGGTGACCATCCCGGCCACTCCCACCCCGCGGTTCACTT
CTATTGTGTCGATCCTGCCGCCCGATGCTCCCCTCCGGGTACCTTTATCC
TCTACCTGGCCACCATCAGCTCGAGCCGCAgcagcgaaggagagggtggg
aactCAGATGAGACGAGCACGGCGGCCGCCCGACTCTTGAAAGCTGCCAC
TTGCATCCTGATTGACTCCCCTGGAGAGCACGTCTTATGGGCTGTCACCT
ACGAACAACCTCTGGGTGGCTTGTCCTAcccggaggggaaggaggcatgt
gGGGAAATTCCTTCGGGGCCCCCACCCCCGTGtgcctcgtcccccccgtc
tccctccgtcgccaAGAACGTCCTGACCGTCGAACGCATAGCTCCTGAAT
TCTACTTGGACTCACCCTTGAAGCAAGCACGGCATCTCTTTGAATCTATT
TGTCCAGGAGAAGCTTTTCTACCGGCCGAGGTTCCCGAGGGAGTGCTGCC
CTTCGATGTCGCAACTACGGACGGAGGAGATGACCATGAAGAAGCCCTAC
TAGAGGAAGCCATGACATCGCTTAACTTGCAGAAGAAAACTTATCCTGCG
AACGAGGTGACGGGAACCGGAAGGGGGCATGGGTTAGAGcacaagaaaga
ggaaaggaataCTTAA

Synonyms

Publications