EWM29339.1, cds1333 (CDS) Nannochloropsis gaditana

Overview
NameEWM29339.1
Unique Namecds1333
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:378783..378871 +
Alignment locationCM002457.1:378949..381292 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29339.1
Productrab proteins geranylgeranyltransferase component a 2
Orig transcript idgnl|cribi|Naga_100205g11.2991.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:378783..378871 +
CM002457.1supercontigCM002457.1:378949..381292 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR018203GDP_dissociation_inhibitor
Homology
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|585111866|gb|EWM29339.1| (rab proteins geranylgeranyltransferase component a 2 [Nannochloropsis gaditana])

HSP 1 Score: 1649.03 bits (4269), Expect = 0.000e+0
Identity = 810/810 (100.00%), Postives = 810/810 (100.00%), Query Frame = 0
Query:    1 MSIDPREDGLEHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDTPCVLRRRWPARRWRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCLMVLLPGHDSVSTRVIQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLVRRVVLLDCAPAALSWKTGGMGGGPGDDQAEEGARTETGTCGGVMPPGTVPGCSGDHPGHSHPAVHFYCVDPAARCSPPGTFILYLATISSSRSSEGEGGNSDETSTAAARLLKAATCILIDSPGEHVLWAVTYEQPLGGLSYPEGKEACGEIPSGPPPPCASSPPSPSVAKNVLTVERIAPEFYLDSPLKQARHLFESICPGEAFLPAEVPEGVLPFDVATTDGGDDHEEALLEEAMTSLNLQKKTYPANEVTGTGRGHGLEHKKEERNT 810
            MSIDPREDGLEHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDTPCVLRRRWPARRWRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCLMVLLPGHDSVSTRVIQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLVRRVVLLDCAPAALSWKTGGMGGGPGDDQAEEGARTETGTCGGVMPPGTVPGCSGDHPGHSHPAVHFYCVDPAARCSPPGTFILYLATISSSRSSEGEGGNSDETSTAAARLLKAATCILIDSPGEHVLWAVTYEQPLGGLSYPEGKEACGEIPSGPPPPCASSPPSPSVAKNVLTVERIAPEFYLDSPLKQARHLFESICPGEAFLPAEVPEGVLPFDVATTDGGDDHEEALLEEAMTSLNLQKKTYPANEVTGTGRGHGLEHKKEERNT
Sbjct:    1 MSIDPREDGLEHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDTPCVLRRRWPARRWRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCLMVLLPGHDSVSTRVIQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLVRRVVLLDCAPAALSWKTGGMGGGPGDDQAEEGARTETGTCGGVMPPGTVPGCSGDHPGHSHPAVHFYCVDPAARCSPPGTFILYLATISSSRSSEGEGGNSDETSTAAARLLKAATCILIDSPGEHVLWAVTYEQPLGGLSYPEGKEACGEIPSGPPPPCASSPPSPSVAKNVLTVERIAPEFYLDSPLKQARHLFESICPGEAFLPAEVPEGVLPFDVATTDGGDDHEEALLEEAMTSLNLQKKTYPANEVTGTGRGHGLEHKKEERNT 810          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|553191067|ref|XP_005855315.1| (hypothetical protein NGA_2102200, partial [Nannochloropsis gaditana CCMP526] >gi|422293745|gb|EKU21045.1| hypothetical protein NGA_2102200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 219.935 bits (559), Expect = 1.794e-64
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0
Query:  437 LGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLVRRVVL 545
            LGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLR+QPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPA WRGRRRRGGVDLRLGPEGGSGGRSLVRRVVL
Sbjct:    1 LGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLREQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPAEWRGRRRRGGVDLRLGPEGGSGGRSLVRRVVL 109          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|695430327|ref|XP_009530414.1| (hypothetical protein PHYSODRAFT_387561, partial [Phytophthora sojae] >gi|348673166|gb|EGZ12985.1| hypothetical protein PHYSODRAFT_387561, partial [Phytophthora sojae])

HSP 1 Score: 177.948 bits (450), Expect = 3.413e-44
Identity = 143/500 (28.60%), Postives = 211/500 (42.20%), Query Frame = 0
Query:   11 EHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDTPCVLRRRWPARRWRAAGGI---DRGDREEGEKEEGSGEGTDPPIDEDAPSKCLMVLLPGHDSVSTRVIQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSV---ELETDAYLQRPLRDFLE-HSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEH 503
            E +YDV+++GTG+VE IL+ AL ++GK VL                           H    D  GS  A  P    L              RW     I   + GD ++ +K E   + T   IDED        +LP   S   R++                                          EEG  +  T    E L+ +S  F++D++P ++++   ++  L++SGV  YLEF  +   ++   SA                         SG     S     VPCSK DVF S LL   EKRQLMKFLQ VAD+G      +  + +NE  L   R+L+RPQNK S    + E + YL RP ++ LE H K+   LQ VV + + L   P           + Q++  EGL  ++ ++  +G++  TAFL P+YG  +L Q+F R+S+V+GG Y+LR       +  ET    GV    G  ++ +H
Sbjct:    7 ETEYDVLLVGTGMVEGILAGALARIGKKVL---------------------------HLDQNDYYGSNYASFPLAQFL--------------RWTKNENIAPRNFGDEDDNDKVEKKVKDT-ATIDEDKQR-----VLPMKSSFECRLL------------------------------------------EEGFADEAT---KEELLRQSSSFSIDVNPRLMLSSEQLVEILITSGVGRYLEFAAIERTYVHFQSAV------------------------SGAKSEESDTVWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERTLALGRALKRPQNKASQADGDAELEKYLDRPFQELLEKHFKLSSKLQQVVVYCVGLASFPA---------TKNQISAREGLEAVYRYVASIGRFTGTAFLAPLYGISELAQSFCRLSAVYGGIYVLRAPIDGFVLDTETNELRGVRCCDGDVLRTKH 381          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|156408209|ref|XP_001641749.1| (predicted protein [Nematostella vectensis] >gi|156228889|gb|EDO49686.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 173.326 bits (438), Expect = 4.022e-42
Identity = 140/534 (26.22%), Postives = 226/534 (42.32%), Query Frame = 0
Query:   13 QYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPT--------QAKLWD-----------------TPCVLRRRWPARRWRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCLMVLLPGHDSVSTRVIQIDENLPPRGRAGAEEGPFH----TTDGPTSAPPRA-FPSSSLPAQAEEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPAGWR 516
            +YD I++GTGL EA+++AAL+++G  VL+ ++ DYY  + W SF  + L  W + ++K Q+P    +   P         + K+ D                  PCV           AA     G   + E  E +GE           + CL      H++VS     +D++      AG             +  TS+P  A FP S    +A+    +  T  D E      R FN+DL+P +L++ G ++  L+S+ ++ Y EF+          + + I    +G+ ++                         VPCS+ DVFSS L+P  EKR LMKFL    D            H   +E                  E   +  +P  +FL+  +M  +LQ  V HA+A++              +    T +GL      L  LG+YG + F+WP+YG G+L QA+ RM +V+GG Y LR     + V  +   C+ V+  +G  +KC+ +++    +P+ WR
Sbjct:    7 EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQ-WASFTFDGLLKWIQRNQKKQNPVQDKKQTDPITLEKEATEKDKIGDERTDQENETGNKEITDIAPCV------RDNVTAAFPAMHGSLAQNENNEITGESAA------ETTFCL------HENVSEESTIVDDSTQIEQGAGNNVSVTQPGSQIDEAETSSPSVASFPISRPQRRAKPAVNSDMTYSDLEPY---HRQFNIDLAPKLLLSRGALVESLISANISHYAEFK----------AVNQILTFLEGSMEA-------------------------VPCSRSDVFSSKLIPVIEKRLLMKFLTFCLD------------HNEHLE------------------EYKPFEDKPFVEFLKSRRMTPNLQHFVIHAIAMV--------------KPDALTIDGLNAAQSFLMSLGRYGNSPFIWPLYGLGELPQAYCRMCAVFGGLYCLRKSAESIVVDTKEKKCVKVV-SEGQELKCKWLIMEHTYLPSEWR 438          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|634853364|ref|XP_007940910.1| (PREDICTED: rab proteins geranylgeranyltransferase component A 2 [Orycteropus afer afer])

HSP 1 Score: 169.859 bits (429), Expect = 8.905e-41
Identity = 139/520 (26.73%), Postives = 215/520 (41.35%), Query Frame = 0
Query:    8 DGLEHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDTPCVLRRRWPARR-----WRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCLM----------VLLPGHDSV------STRVIQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVL 506
            D L  ++DV+I+GTGL E+IL+AA ++ G+ VL+ +   YYGG +W SF    L +W K +++       +    P      +    LR++    +        +  +D    E G  ++         + E   S CL+            +P  D++      S  V  I+E L      G ++   HT DG     P       +    ++ K N  T      ++   R FN+DL   +L + G +I  L+ S V+ Y EF+          + + I   W+G                             VPCS+ DVF+S  L   EKR LMKF     D+          QH +E E                     A+ QRP  D+L+  K+   LQ  V H++A+               E   TT +GL+     LQ LG +G T FL+P+YG G+++Q F RM +V+GG Y LR +   L V  E+G C  V+D  G  I  ++ ++
Sbjct:    3 DSLPTEFDVVIVGTGLPESILAAACSRSGQRVLHVDSKSYYGG-NWASFSFSGLLSWLKDYQQICIDGEESTVKWPDLIHETEEAITLRKKDETIQHMEIFCYVSQDLDDNVEEIGALQKNLSTVASSTLTEPLDSACLVKDKRSVYVTKYKMPAKDTLKSDRETSLEVNDIEETLEKENDCG-DKTRVHT-DGDKDEKP-------VEDNMDQPKRNRIT---YSQILKEGRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFK----------NVTRILTFWEG-------------------------KVEQVPCSRADVFNSKELTMVEKRMLMKFFTFCTDF---------EQHPDEYE---------------------AFKQRPFSDYLKTKKLTPSLQHFVLHSIAM-------------TSESSCTTIDGLKATKNFLQCLGWFGNTPFLFPLYGQGEISQCFCRMCAVFGGIYCLRRKVQCLVVDKESGRCNAVIDHLGQRIHAKNFIV 431          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|344278363|ref|XP_003410964.1| (PREDICTED: rab proteins geranylgeranyltransferase component A 2 [Loxodonta africana])

HSP 1 Score: 169.859 bits (429), Expect = 1.299e-40
Identity = 142/521 (27.26%), Postives = 221/521 (42.42%), Query Frame = 0
Query:    8 DGLEHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDT--PCVLRRRWPARR-----WRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCL-----MVLLPGHD------SVSTRVIQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGKGNT----KTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVL 506
            D L  ++DV+IIGTGL E+IL+AA ++ G+ VL+ +   YYGG +W SF    L +W K ++  ++      + A  Q  + +T     LR++    +       A+  +D    E G  ++         + E   S CL     +V +P ++      S S   I +D N         +E P    DG   A   A   +        G+GNT    +       ++   R FN+DL   +L + G +I  L+ S V+ Y EF+          + + I   W+G  +                          VPCS+ DVF+S  L   EKR LMKFL    D+          QH +E E                     A+ Q    ++L+  K+  +LQ  V H++A+               E   TT +GL+     LQ LG++G T FL+P+YG G++ Q F RM +V+GG Y LR +   L V  E+G C  V+D  G  I  ++ ++
Sbjct:    3 DSLPTEFDVVIIGTGLPESILAAASSRSGQRVLHVDSRSYYGG-NWASFSFSGLLSWLKEYQ--ENCVDGEESTAAWQGLIHETEEAITLRKKDETIQHVEVFCYASQDLDDSVEEVGALQKNPCSVASSTLTETLDSACLGEDEHLVHVPSYERPAQDTSKSDGEISLDVN-------DVKEPPEKGNDGGDRARAHAVSDADKDENKPAGEGNTDQPTRNRITYSQIVKEGRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFK----------NVTRILAFWEGKVEQ-------------------------VPCSRADVFNSKELTMVEKRMLMKFLTFCVDY---------EQHPDEYE---------------------AFKQCSFSEYLKTKKLTPNLQHFVLHSIAMT-------------SESSCTTIDGLKATKNFLQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHKVHCLIVDKESGRCKAVIDHFGQRINAKYFIV 435          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|632935441|ref|XP_007890079.1| (PREDICTED: rab proteins geranylgeranyltransferase component A 1 [Callorhinchus milii])

HSP 1 Score: 169.474 bits (428), Expect = 2.674e-40
Identity = 183/792 (23.11%), Postives = 298/792 (37.63%), Query Frame = 0
Query:   15 DVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWD------------------TPCVLRRRWPAR-----RWRAAGGIDRGDREE---GEKEEGSGEGTDPPIDEDAPSKCLMVLLPGHDSVSTRV-----IQIDENLPPRGRAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVLGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLVRRVVLLDCAPAALSWKTGGMGGGPGDDQAEEGARTETGTCGGVMPPGTVPGCSGDHPGHSHPAVHFYCVDPAARCSPPGTFILYLATISSSRSSEGEGGNSDETSTAAARLL-----KAATCILIDSPGEHVLWAVTY---EQPLGGLSYPEGKEACGEIPSGPPPPCASSPPSPSVAKNVLTVERIAPEFYLDSPLKQARHLFESICPGEAFL-PAEVPEGVLPFDVATTDGGD 766
            +++I+GTGL EAI++AA +++G+ VL+ +K  YYGG +W SF    L +W +   +      S+      Q K+ +                    C +     A      + + A G    + E     + EE     T P  D ++P++C  V L   D+ S        + +D+   P   A  +    +  + P       F +  +    EE K  T +      ++   R FN+DL+   L + G ++  L+ S V+ Y EF+ +  +                                 G  V +      VPCS+ DVF+S  L   EKR LMKFL    ++          QH +E +                      +  +   ++L+  K+ E+LQ+ + H++A++                  +T EG +     LQ LG+YG T FL+P+YG G++ Q F RMS+V+GGTY LR     L V  ETG C  V+D  G  I CEH ++    +P       +   +   +    GS  +S   ++ +L                                         TVP           P+V    + P++   P GT++++L   SS  + E      D  +   A  +     +  TC   +     VLWA+ +   +      S  EG  +   I SGP P                           +  +KQA  +F+ + P E F  PA  PE ++ +D   T  GD
Sbjct:   10 ELVILGTGLQEAIIAAACSRIGQRVLHVDKRMYYGG-NWASFSFSGLLSWIE---ECNGQTSSSLETVNLQCKILEGEDTILLDQVDQSIENLEVFCYVSAEEDAEEAADVQMKQANGTSSAESENKVLNQSEESPSYKTAPSDDVESPTQCSDVQLSTKDAPSASSSTTSEMDVDKKEIPITAASDDGNEANNAEKPNIM----FATQKVK---EEMKKMTYS-----QIMKNGRKFNIDLTSKFLYSRGPLVDLLIKSNVSRYTEFKNVTRILTCQ-----------------------------GGKVEQ------VPCSRADVFASKQLTVVEKRMLMKFLTFSLEY---------EQHTDEFQ---------------------GFQDKAFSEYLKTKKLTENLQYFILHSIAMVSDTA--------------STTEGFKATQHFLQCLGRYGNTPFLFPLYGVGEIPQCFCRMSAVFGGTYCLRHSVQCLVVDRETGRCKAVIDSIGNRITCEHFIVEDSYLPQKHTKNIQYRQISRGVLITNGSVFKSDSEQISIL-----------------------------------------TVPAME-----QGRPSVRIIELCPSSMTCPQGTYLVHLTCPSSGTAKE------DFEAVVTALFVNYNETEEMTCSDEEDEKPKVLWALYFNVRDSSAIDRSAYEGLPSNVYICSGPDPALG-----------------------FEHSVKQAEAIFKQLFPEEEFCPPAPNPEEII-YDSDGTQQGD 630          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|567998057|gb|ETL48136.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567998058|gb|ETL48137.1| hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 165.236 bits (417), Expect = 1.216e-39
Identity = 113/354 (31.92%), Postives = 171/354 (48.31%), Query Frame = 0
Query:  199 EEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVS---VELETDAYLQRPLRDFLE-HSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVV--------LGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLV 540
            EEG  +  T    E L+ +S  F++D++P ++++   ++  L++SGV  YLEF  +   ++        +P+                +NS+ P          VPCSK DVF S LL   EKRQLMKFLQ VAD+G      +  + +NE  L   R+L+RPQNK S    + E  AYL  P ++ LE H K+   LQ VV + + L   P           + Q++  +GL  ++ ++  +G++  TAFL P+YG  +L Q+F R+S+V+GG Y+LR       +  ET    GV    G  ++ +HVV        L   N+     G   RG   L+    GG     LV
Sbjct:   11 EEGFSDDAT---KEELVQKSSSFSIDVNPRLMLSSEQLVETLITSGVGRYLEFAAIERTYV------HFQPT----------------DNSTEPD-----TVWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERSLALGRALKRPQNKASQADTDAELVAYLDNPFQELLEKHFKLSVKLQQVVVYCVGLATFPA---------SKNQISARDGLAAVYRYVASIGRFTGTAFLAPLYGISELAQSFCRLSAVYGGIYVLRAPINGFVLDNETRTLTGVRCSDGDVLRTKHVVTNGSYVDCLRLNNVSKRAHGELLRGVFVLKSSLRGGMNRIMLV 325          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|567998056|gb|ETL48135.1| (hypothetical protein L916_02226 [Phytophthora parasitica])

HSP 1 Score: 165.236 bits (417), Expect = 4.738e-39
Identity = 113/354 (31.92%), Postives = 171/354 (48.31%), Query Frame = 0
Query:  199 EEGKGNTKTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAFHPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVS---VELETDAYLQRPLRDFLE-HSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVV--------LGQGNMPAGWRGRRRRGGVDLRLGPEGGSGGRSLV 540
            EEG  +  T    E L+ +S  F++D++P ++++   ++  L++SGV  YLEF  +   ++        +P+                +NS+ P          VPCSK DVF S LL   EKRQLMKFLQ VAD+G      +  + +NE  L   R+L+RPQNK S    + E  AYL  P ++ LE H K+   LQ VV + + L   P           + Q++  +GL  ++ ++  +G++  TAFL P+YG  +L Q+F R+S+V+GG Y+LR       +  ET    GV    G  ++ +HVV        L   N+     G   RG   L+    GG     LV
Sbjct:  109 EEGFSDDAT---KEELVQKSSSFSIDVNPRLMLSSEQLVETLITSGVGRYLEFAAIERTYV------HFQPT----------------DNSTEPD-----TVWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERSLALGRALKRPQNKASQADTDAELVAYLDNPFQELLEKHFKLSVKLQQVVVYCVGLATFPA---------SKNQISARDGLAAVYRYVASIGRFTGTAFLAPLYGISELAQSFCRLSAVYGGIYVLRAPINGFVLDNETRTLTGVRCSDGDVLRTKHVVTNGSYVDCLRLNNVSKRAHGELLRGVFVLKSSLRGGMNRIMLV 423          
BLAST of EWM29339.1 vs. NCBI_GenBank
Match: gi|507971791|ref|XP_004690834.1| (PREDICTED: rab proteins geranylgeranyltransferase component A 2 [Condylura cristata])

HSP 1 Score: 165.236 bits (417), Expect = 5.039e-39
Identity = 137/516 (26.55%), Postives = 214/516 (41.47%), Query Frame = 0
Query:    8 DGLEHQYDVIIIGTGLVEAILSAALTKVGKSVLNYEKYDYYGGEDWPSFHLEALQAWAKAHRKSQDPAGSARAVAPTQAKLWDTPCVLRRRWPARRWRAAGGIDRGDREEGEKEEGSGEGTDPPIDEDAPSKCLMV--LLPGHDSVSTRVIQIDENLPPRG--RAGAEEGPFHTTDGPTSAPPRAFPSSSLPAQAEEGK----GNT----KTCWDAESLIARSRDFNLDLSPVVLMAGGDMIAPLLSSGVASYLEFRPLYALFIASPSASAIRPSWKGTHQSEASESASTGENSSGPGVSRSVAF-----HPVPCSKPDVFSSHLLPAKEKRQLMKFLQAVADWGFRAQSGKSAQHRNEVELGQARSLQRPQNKVSVELETDAYLQRPLRDFLEHSKMDEHLQWVVWHALALLLGPGEGGREGGDEGERQVTTEEGLRRIWGHLQGLGQYGKTAFLWPMYGGGDLTQAFSRMSSVWGGTYLLRDQPAQLAVHPETGNCLGVLDRKGAAIKCEHVVL 506
            D L  ++DV++IGTGL E+IL+AA ++ G+ VL+ +   YYGG +W SF    L +W   ++++ D  G + A         +    L R+    + R        D  +  +E  + +    P+   + SK L    L     S+ST   +    +P R    +  E  P  T              S L     E K    GN+    +       ++  SR FN+DL   +L + G +I  L+ S V  Y EF+                                         V+R +AF       VPCS+ DVF+S  L   EKR LMKFL    D+          QH +E +                     A++Q    ++L+  K+  +LQ  V H++A+               +   TT +GL+     LQ LG++G T FL+P+YG G++ Q F RMS+V+GG Y LR Q   L V  + G C  ++D+ G  I  ++ ++
Sbjct:   12 DCLPTEFDVVVIGTGLPESILAAACSRNGQRVLHIDSKSYYGG-NWASFSFSGLLSWLDDYQQNNDVGGESTAAWQDLIHETEAAVALCRKDETIQHREVFCYVSQDMNDNIEEIDAVQNNPSPVAPSSISKPLDFASLSEETHSLSTTSYK----MPARDTPESDGEISPEVTDTEEKYCGDETCIHSDLAGDKGENKPVMEGNSDQSKRNRVTYSQIVKESRKFNIDLVSKLLYSQGLLIDLLIKSNVCHYAEFK----------------------------------------NVTRILAFREGKVEKVPCSRADVFNSKELTMVEKRMLMKFLAFCLDY---------EQHPDEYQ---------------------AFMQCSFSEYLKTRKLTPNLQHFVLHSIAM-------------TSDSSCTTIDGLKATKNFLQCLGRFGNTPFLFPLYGQGEMPQCFCRMSAVFGGIYCLRRQVQCLVVDKQAGRCTAIIDQFGQRINAKYFIV 439          
The following BLAST results are available for this feature:
BLAST of EWM29339.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111866|gb|EWM29339.1|0.000e+0100.00rab proteins geranylgeranyltransferase component a... [more]
gi|553191067|ref|XP_005855315.1|1.794e-6498.17hypothetical protein NGA_2102200, partial [Nannoch... [more]
gi|695430327|ref|XP_009530414.1|3.413e-4428.60hypothetical protein PHYSODRAFT_387561, partial [P... [more]
gi|156408209|ref|XP_001641749.1|4.022e-4226.22predicted protein [Nematostella vectensis] >gi|156... [more]
gi|634853364|ref|XP_007940910.1|8.905e-4126.73PREDICTED: rab proteins geranylgeranyltransferase ... [more]
gi|344278363|ref|XP_003410964.1|1.299e-4027.26PREDICTED: rab proteins geranylgeranyltransferase ... [more]
gi|632935441|ref|XP_007890079.1|2.674e-4023.11PREDICTED: rab proteins geranylgeranyltransferase ... [more]
gi|567998057|gb|ETL48136.1|1.216e-3931.92hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567998056|gb|ETL48135.1|4.738e-3931.92hypothetical protein L916_02226 [Phytophthora para... [more]
gi|507971791|ref|XP_004690834.1|5.039e-3926.55PREDICTED: rab proteins geranylgeranyltransferase ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1335rna1335Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications