rna1321, rna1321 (mRNA) Nannochloropsis gaditana

Overview
Namerna1321
Unique Namerna1321
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length706
Alignment locationCM002457.1:327193..329568 -

Link to JBrowse

Properties
Property NameValue
Producttelomeric repeat-binding factor
Orig transcript idgnl|cribi|Naga_100028g41.3282.mrna
Orig protein idgnl|cribi|Naga_100028g41.3282
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:327193..329568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100028g41gene1275Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29346.1cds1319Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1321rna1321-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1321 ID=rna1321|Name=rna1321|organism=Nannochloropsis gaditana|type=mRNA|length=706bp
ACATTCACGCATACGCATCATTCAATTACTTAATTATACAGTCAAAATAT
CATGGGTCTGTTTTCACACCGATTGCTGTTTGTCTGGTGGCTATGGATGG
AAAGCGGTACCAGCTTTTTCTTGCGAGCGGGGCGACCTGCGACATCAGGT
AGATGGGAAGCATTCACGTTGCAGTTGTCAGGTCGGCAGTGTGCTCTTGC
TTTTCTTCCGCCTTTAACCTCCCGGGCCTTGGCCGCACTGGGATCCAACT
TTGACGGCAGTGAAATCGATGATGGAGAGGAGAGTGATGGTGAGATTGAC
GAAATTAGCACCAGCATGTCAACAAGTGAGCCAACGTCTGAGTCCCTGCC
AGCATTCAAAGGCAAGCATCGACGTGCCCTCAGGGCACTGGCAGGACGTA
AAAAGGCAAACAAATCTCTTTTTACGATGCAACAATCAGAGTCTCCTCCA
ATCGAAGGCTTTTGCATTGAGGTAGAATCGGCCCTGCGGGCACATGAGCT
GGTTAATGTTCGCGTTCTTTTCGCTCAAAAGAAGAAAGAGGCCAAAGCCG
TCGGATTACTTATGGCAGAGGCAGTGAAAGCAGAGCTTGTGCAGGTCATA
GGTCATACATATCTTTTGTACAGACCAGCAGATCCACCAAAAATTGATTT
GGCGAGACTCACAACGCCACTAAATGGCAAAGAATAAGCATTGTAAGAAC
CTGCGG
back to top

protein sequence of rna1321

>rna1321-protein ID=rna1321-protein|Name=rna1321|organism=Nannochloropsis gaditana|type=polypeptide|length=654bp
MVTGSHQRRDESGPELLSMMNWAAHFRLYSELEALAYAALNAGVYLQSDS
PIGHRVFLAGLEDILDKAVDEHDFAAVLDTLQDAANWLLKAVSKQELFDL
RLKIRRQMVLSPLRKVFSANSEVAVPSRVADLDMDKYWTLLDGTFPLETT
RRASLSAERGDSLASPGLRENSYERVVEAKERKQLLDVQDETRPGGGADI
HKVLYLLKTYSREGFTAEVREFTRRVEARLLEPPEPLSEDLDGGGTPSGA
LGNDPRLLASAPAHIQRRLGDWTRTSALVSNEAEREATEVKLRAHAQILR
YTLEAGQRGCPGGRQEGERKGEGAEMGSEEEEAEAEAAEEEGMAEGRRRG
SSSNQGMDARHLAKNLRRSTKVLREGLSQRGLLKIRGTVEGGEGMSGAEL
APGHKKRLYDATRAGRSITFEDSQYVGDDSDEEGQRAREREKSGNTAAAT
QSRQLARENRLAKASAAAAARLAERSNAFHQRGEHAQNQVPFPLKTRNPG
EEHPEEDGEKEAEQQEEGGKRTGEATGAPCGDTVLEADETRQGQGRGRGT
KDRGGERKRTVASKRKLRLAIDNSGRSKRRQPKTHRTSWSQEEVGDLKRA
VLHDGMKGRWADILNSPSYTHLDFNLRTSVDLKDKWRGLERKAASKGLTV
AEVD
back to top

mRNA from alignment at CM002457.1:327193..329568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1321 ID=rna1321|Name=rna1321|organism=Nannochloropsis gaditana|type=mRNA|length=2376bp|location=Sequence derived from alignment at CM002457.1:327193..329568- (Nannochloropsis gaditana)
ACGTGACACTCTTCACTCCTTTCGTAACCACATCGTGGCTACCAAACACT
CATGCTCATGAGCCTGCATGCACAGTCACAGGCTGGATCATCCATTGTGG
CCGTGGGATGAGAGGTCGTTCCTCCTCGTAGCGCCTTGAAATTTCCCGCT
CAAAACAAGGTTTCAATAAAGTGGCTGCCGCCTCCGACGGAGGGAGCAAA
GTTGAAAATCTGTAAGCGAGGCTTCCACGGGTGCAAGCAAGGCTTTCACG
GGCATCTGTACTGTGTGGTATTATGGTTACAGGCAGCCATCAACGCCGAG
ATGAGTCGGGGCCTGAGCTCCTATCCATGATGAACTGGGCTGCTCATTTT
CGCCTGTACAGTGAGCTTGAGGCCCTGGCTTATGCAGCTCTCAACGCAGG
TGTCTACCTGCAGTCCGATTCCCCCATCGGTCATCGAGTGTTTTTGGCAG
GATTGGAGGACATTCTAGACAAAGCCGTGGACGAGCATGACTTCGCGGCC
GTATTGGACACACTTCAAGACGCCGCCAACTGGCTCCTCAAAGCGGTGTC
AAAGCAGGAGTTGTTCGACCTTCGCTTGAAAATCCGTCGGCAGATGGTCC
TCTCCCCGTTGCGGAAAGTGTTCTCTGCAAACTCAGAAGTCGCCGTGCCG
AGTAGGGTGGCAGACTTGGACATGGACAAGTATTGGACCCTCCTGGATGG
GACCTTCCCACTGGAGACAACGCGCCGGGCATCGCTTTCCGCGGAGCGAG
GCGATTCACTGGCCAGTCCTGGGCTTCGTGAAAATTCCTACGAGAGGGTG
GTGGAGGCCAAAGAACGAAAGCAGCTCTTGGATGTGCAGGATGAGACGCG
CCCGGGCGGGGGAGCCGACATTCATAAGGTCCTCTACCTACTCAAGACCT
ACTCTCGTGAGGGTTTCACGGCCGAGGTCCGCGAATTCACCCGGCGTGTG
GAAGCCAGGCTTTTAGAGCCTCCCGAGCCTCTCTCGGAAGATCTAGATGG
GGGAGGGACGCCATCGGGGGCGTTGGGAAACGATCCAAGGCTGCTTGCAT
CGGCCCCCGCCCACATTCAACGCCGCCTTGGAGACTGGACCCGTACCAGT
GCGCTTGTTAGCAACGAGGCAGAGCGGGAGGCGACAGAGGTCAAACTACG
CGCCCACGCGCAGATTCTCCGGTATACTCTCGAGGCAGGGCAGAGAGGTT
GTCCCGGGGGGCGCCAGGAAGGGGAAAGGAAGGGCGAAGGGGCAGAAATG
GGATCGGAGGAGGAAGAAGCGGAGGCGGAGGCGGCGGAGGAGGAGGGCAT
GGCGGAAGGAAGAAGAAGAGGGTCATCGTCCAATCAAGGAATGGACGCGC
GGCATCTCGCGAAGAATCTGAGGCGAAGTACCAAGGTGTTGCGGGAAGGA
CTGAGCCAGCGGGGACTGTTGAAGATTCGCGGTACGGTTGAGGGCGGGGA
GGGCATGTCGGGCGCAGAATTGGCGCCCGGGCACAAAAAGCGCCTGTACG
ATGCGACCCGCGCCGGTCGATCCATCACTTTTGAGGACAGTCAGTACGTG
GGGGACGACAGCGATGAGGAGGGACAGCGTGCGCGCGAGAGAGAAAAGTC
GGGGAATACTGCGGCTGCCACCCAGAGCAGGCAGCTTGCGCGAGAGAATC
GGTTGGCCAAGGCCTCGGCAGCAGCAGCAGCACGGTTGGCAGAGCGCAGC
AATGCGTTTCACCAGAGAGGAGAGCATGCACAGAACCAGGTTCCATTCCC
TTTAAAAACGCGTAATCCAGGGGAGGAGCACCCTGAAGAGGACGGTGAAA
AGGAGGCAGAACAGCAGGAAGAAGGTGGAAAGAGGACAGGCGAGGCAACA
GGGGCGCCTTGCGGCGATACGGTCCTCGAAGCTGACGAGACAAGGCAGGG
TCAGGGTCGCGGACGGGGGACGAAGGATCGAGGCGGAGAACGGAAGCGAA
CAGTGGCTTCGAAAAGGAAATTGCGCTTGGCCATCGACAATTCAGGGCGG
AGCAAGCGCCGACAGCCCAAGACGCATCGCACGTCATGGTCCCAGGAGGA
AGTGGGTGATCTGAAGCGAGCCGTGCTCCACGATGGAATGAAAGGGCGGT
GGGCGGACATCCTGAATAGCCCTTCTTATACTCATCTGGACTTCAATCTG
CGGACAAGTGTAGATCTAAAGGATAAGTGGAGAGGTTTGGAGCGGAAGGC
GGCTTCCAAGGGGCTTACCGTCGCAGAAGTCGACTAAAATCAGAGACAAA
GCAACCAGCGGACCGCTGTACAAGACGCTTACGACAAAAGTAGAGGCGTG
AAGTCATGCAAAAAATGTGAAAATCCATCCGGTCGTGGAAGTCACTTCTT
TTTAAATTAGGTTGCTTGACCAATCA
back to top

Coding sequence (CDS) from alignment at CM002457.1:327193..329568-

>rna1321 ID=rna1321|Name=rna1321|organism=Nannochloropsis gaditana|type=CDS|length=1965bp|location=Sequence derived from alignment at CM002457.1:327193..329568- (Nannochloropsis gaditana)
ATGGTTACAGGCAGCCATCAACGCCGAGATGAGTCGGGGCCTGAGCTCCT
ATCCATGATGAACTGGGCTGCTCATTTTCGCCTGTACAGTGAGCTTGAGG
CCCTGGCTTATGCAGCTCTCAACGCAGGTGTCTACCTGCAGTCCGATTCC
CCCATCGGTCATCGAGTGTTTTTGGCAGGATTGGAGGACATTCTAGACAA
AGCCGTGGACGAGCATGACTTCGCGGCCGTATTGGACACACTTCAAGACG
CCGCCAACTGGCTCCTCAAAGCGGTGTCAAAGCAGGAGTTGTTCGACCTT
CGCTTGAAAATCCGTCGGCAGATGGTCCTCTCCCCGTTGCGGAAAGTGTT
CTCTGCAAACTCAGAAGTCGCCGTGCCGAGTAGGGTGGCAGACTTGGACA
TGGACAAGTATTGGACCCTCCTGGATGGGACCTTCCCACTGGAGACAACG
CGCCGGGCATCGCTTTCCGCGGAGCGAGGCGATTCACTGGCCAGTCCTGG
GCTTCGTGAAAATTCCTACGAGAGGGTGGTGGAGGCCAAAGAACGAAAGC
AGCTCTTGGATGTGCAGGATGAGACGCGCCCGGGCGGGGGAGCCGACATT
CATAAGGTCCTCTACCTACTCAAGACCTACTCTCGTGAGGGTTTCACGGC
CGAGGTCCGCGAATTCACCCGGCGTGTGGAAGCCAGGCTTTTAGAGCCTC
CCGAGCCTCTCTCGGAAGATCTAGATGGGGGAGGGACGCCATCGGGGGCG
TTGGGAAACGATCCAAGGCTGCTTGCATCGGCCCCCGCCCACATTCAACG
CCGCCTTGGAGACTGGACCCGTACCAGTGCGCTTGTTAGCAACGAGGCAG
AGCGGGAGGCGACAGAGGTCAAACTACGCGCCCACGCGCAGATTCTCCGG
TATACTCTCGAGGCAGGGCAGAGAGGTTGTCCCGGGGGGCGCCAGGAAGG
GGAAAGGAAGGGCGAAGGGGCAGAAATGGGATCGGAGGAGGAAGAAGCGG
AGGCGGAGGCGGCGGAGGAGGAGGGCATGGCGGAAGGAAGAAGAAGAGGG
TCATCGTCCAATCAAGGAATGGACGCGCGGCATCTCGCGAAGAATCTGAG
GCGAAGTACCAAGGTGTTGCGGGAAGGACTGAGCCAGCGGGGACTGTTGA
AGATTCGCGGTACGGTTGAGGGCGGGGAGGGCATGTCGGGCGCAGAATTG
GCGCCCGGGCACAAAAAGCGCCTGTACGATGCGACCCGCGCCGGTCGATC
CATCACTTTTGAGGACAGTCAGTACGTGGGGGACGACAGCGATGAGGAGG
GACAGCGTGCGCGCGAGAGAGAAAAGTCGGGGAATACTGCGGCTGCCACC
CAGAGCAGGCAGCTTGCGCGAGAGAATCGGTTGGCCAAGGCCTCGGCAGC
AGCAGCAGCACGGTTGGCAGAGCGCAGCAATGCGTTTCACCAGAGAGGAG
AGCATGCACAGAACCAGGTTCCATTCCCTTTAAAAACGCGTAATCCAGGG
GAGGAGCACCCTGAAGAGGACGGTGAAAAGGAGGCAGAACAGCAGGAAGA
AGGTGGAAAGAGGACAGGCGAGGCAACAGGGGCGCCTTGCGGCGATACGG
TCCTCGAAGCTGACGAGACAAGGCAGGGTCAGGGTCGCGGACGGGGGACG
AAGGATCGAGGCGGAGAACGGAAGCGAACAGTGGCTTCGAAAAGGAAATT
GCGCTTGGCCATCGACAATTCAGGGCGGAGCAAGCGCCGACAGCCCAAGA
CGCATCGCACGTCATGGTCCCAGGAGGAAGTGGGTGATCTGAAGCGAGCC
GTGCTCCACGATGGAATGAAAGGGCGGTGGGCGGACATCCTGAATAGCCC
TTCTTATACTCATCTGGACTTCAATCTGCGGACAAGTGTAGATCTAAAGG
ATAAGTGGAGAGGTTTGGAGCGGAAGGCGGCTTCCAAGGGGCTTACCGTC
GCAGAAGTCGACTAA
back to top
Synonyms
Publications