EWM29346.1, cds1319 (CDS) Nannochloropsis gaditana

Overview
NameEWM29346.1
Unique Namecds1319
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:327332..329296 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29346.1
Producttelomeric repeat-binding factor
Orig transcript idgnl|cribi|Naga_100028g41.3282.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:327332..329296 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
IPR009057Homeodomain-like
Homology
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BLAST of EWM29346.1 vs. NCBI_GenBank
Match: gi|585111874|gb|EWM29346.1| (telomeric repeat-binding factor [Nannochloropsis gaditana])

HSP 1 Score: 1318.14 bits (3410), Expect = 0.000e+0
Identity = 654/654 (100.00%), Postives = 654/654 (100.00%), Query Frame = 0 
Query:    1 MVTGSHQRRDESGPELLSMMNWAAHFRLYSELEALAYAALNAGVYLQSDSPIGHRVFLAGLEDILDKAVDEHDFAAVLDTLQDAANWLLKAVSKQELFDLRLKIRRQMVLSPLRKVFSANSEVAVPSRVADLDMDKYWTLLDGTFPLETTRRASLSAERGDSLASPGLRENSYERVVEAKERKQLLDVQDETRPGGGADIHKVLYLLKTYSREGFTAEVREFTRRVEARLLEPPEPLSEDLDGGGTPSGALGNDPRLLASAPAHIQRRLGDWTRTSALVSNEAEREATEVKLRAHAQILRYTLEAGQRGCPGGRQEGERKGEGAEMGSEEEEAEAEAAEEEGMAEGRRRGSSSNQGMDARHLAKNLRRSTKVLREGLSQRGLLKIRGTVEGGEGMSGAELAPGHKKRLYDATRAGRSITFEDSQYVGDDSDEEGQRAREREKSGNTAAATQSRQLARENRLAKASAAAAARLAERSNAFHQRGEHAQNQVPFPLKTRNPGEEHPEEDGEKEAEQQEEGGKRTGEATGAPCGDTVLEADETRQGQGRGRGTKDRGGERKRTVASKRKLRLAIDNSGRSKRRQPKTHRTSWSQEEVGDLKRAVLHDGMKGRWADILNSPSYTHLDFNLRTSVDLKDKWRGLERKAASKGLTVAEVD 654
            MVTGSHQRRDESGPELLSMMNWAAHFRLYSELEALAYAALNAGVYLQSDSPIGHRVFLAGLEDILDKAVDEHDFAAVLDTLQDAANWLLKAVSKQELFDLRLKIRRQMVLSPLRKVFSANSEVAVPSRVADLDMDKYWTLLDGTFPLETTRRASLSAERGDSLASPGLRENSYERVVEAKERKQLLDVQDETRPGGGADIHKVLYLLKTYSREGFTAEVREFTRRVEARLLEPPEPLSEDLDGGGTPSGALGNDPRLLASAPAHIQRRLGDWTRTSALVSNEAEREATEVKLRAHAQILRYTLEAGQRGCPGGRQEGERKGEGAEMGSEEEEAEAEAAEEEGMAEGRRRGSSSNQGMDARHLAKNLRRSTKVLREGLSQRGLLKIRGTVEGGEGMSGAELAPGHKKRLYDATRAGRSITFEDSQYVGDDSDEEGQRAREREKSGNTAAATQSRQLARENRLAKASAAAAARLAERSNAFHQRGEHAQNQVPFPLKTRNPGEEHPEEDGEKEAEQQEEGGKRTGEATGAPCGDTVLEADETRQGQGRGRGTKDRGGERKRTVASKRKLRLAIDNSGRSKRRQPKTHRTSWSQEEVGDLKRAVLHDGMKGRWADILNSPSYTHLDFNLRTSVDLKDKWRGLERKAASKGLTVAEVD
Sbjct:    1 MVTGSHQRRDESGPELLSMMNWAAHFRLYSELEALAYAALNAGVYLQSDSPIGHRVFLAGLEDILDKAVDEHDFAAVLDTLQDAANWLLKAVSKQELFDLRLKIRRQMVLSPLRKVFSANSEVAVPSRVADLDMDKYWTLLDGTFPLETTRRASLSAERGDSLASPGLRENSYERVVEAKERKQLLDVQDETRPGGGADIHKVLYLLKTYSREGFTAEVREFTRRVEARLLEPPEPLSEDLDGGGTPSGALGNDPRLLASAPAHIQRRLGDWTRTSALVSNEAEREATEVKLRAHAQILRYTLEAGQRGCPGGRQEGERKGEGAEMGSEEEEAEAEAAEEEGMAEGRRRGSSSNQGMDARHLAKNLRRSTKVLREGLSQRGLLKIRGTVEGGEGMSGAELAPGHKKRLYDATRAGRSITFEDSQYVGDDSDEEGQRAREREKSGNTAAATQSRQLARENRLAKASAAAAARLAERSNAFHQRGEHAQNQVPFPLKTRNPGEEHPEEDGEKEAEQQEEGGKRTGEATGAPCGDTVLEADETRQGQGRGRGTKDRGGERKRTVASKRKLRLAIDNSGRSKRRQPKTHRTSWSQEEVGDLKRAVLHDGMKGRWADILNSPSYTHLDFNLRTSVDLKDKWRGLERKAASKGLTVAEVD 654
The following BLAST results are available for this feature:
BLAST of EWM29346.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111874|gb|EWM29346.1|0.000e+0100.00telomeric repeat-binding factor [Nannochloropsis g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1321rna1321Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications