rna1320, rna1320 (mRNA) Nannochloropsis gaditana

Overview
Namerna1320
Unique Namerna1320
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length627
Alignment locationCM002457.1:322976..324108 +

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Properties
Property NameValue
Product23s rrna methyltransferase j
Orig transcript idgnl|cribi|Naga_100028g40.3289.mrna
Orig protein idgnl|cribi|Naga_100028g40.3289
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:322976..324108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100028g40gene1274Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1320rna1320-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29353.1cds1318Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1320 ID=rna1320|Name=rna1320|organism=Nannochloropsis gaditana|type=mRNA|length=627bp
ATGTCGGAGGAGGAGGTGGTCACCGGCGACGAGGCTCCTTCGGGCTCGGG
ACACAGAATTAAGATCAAAATGACGAACGAAGGCCGTGTCCTAGAAGAAA
AAGGTCCCTCAAAAGGGATCTCTCCTCTCTCCCCTCTCCCGCCTCCGCAT
GAAGGCCCAGCTGGAGGCAGCGTGGATGGGAAGCACGAGCTAAACAAGGT
GGAAAGAGCCCCCGAAACCTCGTCTGGAATACCTGCTTCTTCCCCCGGAA
CAGAGCCAGCCGGCAGCACGCTGTCACCACCATTGGGCCGAGCAGATATC
GAGCACAGCATTTCCTCGGAGACTGCGGAGGGAAGAAACGAAGGAAGGCC
CCTGTGTGCGGAGACCTTGGCGTCGCCCGAGAGCACGCCCGCTTCGACGG
CCCCCCCCAAGAAGAAGACCAGCAAGGCCAAAAGGCAGCGCGCTCCTGGC
CCCGGAAAAGCTCCCGTCGAGCCTACATCCCTCCCTGTGGCCGACGTGGA
AGCACAGCAGGTGACCGAGGAATCCTCCTCCGGCCCTTCCGCTTCCTGTG
CCCCGCCCTCCGCCCCCCCCCCCGGAAGCCATGGCCACCTCCGGAGGCAA
CAGCCCCGACACGGGCAGCAGGGGTGA
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protein sequence of rna1320

>rna1320-protein ID=rna1320-protein|Name=rna1320|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALA
FLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLP
AFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHEL
VNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDL
ARLTTPLNGKE
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mRNA from alignment at CM002457.1:322976..324108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1320 ID=rna1320|Name=rna1320|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp|location=Sequence derived from alignment at CM002457.1:322976..324108+ (Nannochloropsis gaditana)
ACATTCACGCATACGCATCATTCAATTACTTAATTATACAGTCAAAATAT
CATGGGTCTGTTTTCACACCGATTGCTGTTTGTCTGGTGGCTATGGATGG
AAAGCGGTACCAGCTTTTTCTTGCGAGCGGGGCGACCTGCGACATCAGGT
AGATGGGAAGCATTCACGTTGCAGTTGTCAGGTATGTATGTGTGCTACGT
GGAGTGGCATACtcaatttaaaaaaaaatctGTGCGAAGCCGCCTAATTT
ACGTCCTCCCACATGATGTAGGTCGGCAGTGTGCTCTTGCTTTTCTTCCG
CCTTTAACCTcccgggccttggccgcaCTGGGATCCAACTTTGACGGCAG
TGAAATcgatgatggagaggagagTGATGGTGAGATTGACGAAATTAGCA
CCAGCATGTCAACAAGTGAGCCAACGTCTGAGTCCCTGCCAGCATTCAAA
GGCAAGCATCGACGTGCCCTCAGGGCACTGGCAGGTGCGTCTGTGTGTCG
CTAGCATAGTATCTCCGTCATGCGAGAGTCCTTACCAGCGCTCTAATTGC
GGTCCTCACTCGTGTCTCGTGAAGTAACGTGTAATATGGCGATAATGTCT
TCAGGAGTGATCACTTGATGACTATCTTTTTTCATGCgaccttccatccc
tctgtGAGTCGATGTACCTTGAATTTTGCTGCTTATAATTACAATATGTT
CCAAACTGTCCACGCAGGACGTAAAAAGGCAAACAAATCTCTTTTTACGA
TGCAACAATCAGAGTCTCCTCCAATCGAAGGCTTTTGCATTGAGGTAGAA
TCGGCCCTGCGGGCACATGAGCTGGTAAGCCATCGCAGTAAATAAGAGTA
TATGAGTAACAGGTGGTTCTATCTTAGTTCTATTATTTATAAAAATATCT
CACACCATGCTGTTCTCATGATATGCAGGTTAATGTTCGCGTTCTTTTCG
ctcaaaagaagaaagaggccaaAGCCGTCGGATTACTTATGGCAGAGGCA
GTGAAAGCAGAGCTTGTGCAGGTCATAGGTCATACATATCTTTTGTACAG
ACCAGCAGATCCACCAAAAATTGATTTGGCGAGACTCACAACGCCACTAA
ATGGCAAAGAATAAGCATTGTAAGAACCTGCGG
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Coding sequence (CDS) from alignment at CM002457.1:322976..324108+

>rna1320 ID=rna1320|Name=rna1320|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at CM002457.1:322976..324108+ (Nannochloropsis gaditana)
ATGGGTCTGTTTTCACACCGATTGCTGTTTGTCTGGTGGCTATGGATGGA
AAGCGGTACCAGCTTTTTCTTGCGAGCGGGGCGACCTGCGACATCAGGTA
GATGGGAAGCATTCACGTTGCAGTTGTCAGGTCGGCAGTGTGCTCTTGCT
TTTCTTCCGCCTTTAACCTcccgggccttggccgcaCTGGGATCCAACTT
TGACGGCAGTGAAATcgatgatggagaggagagTGATGGTGAGATTGACG
AAATTAGCACCAGCATGTCAACAAGTGAGCCAACGTCTGAGTCCCTGCCA
GCATTCAAAGGCAAGCATCGACGTGCCCTCAGGGCACTGGCAGGACGTAA
AAAGGCAAACAAATCTCTTTTTACGATGCAACAATCAGAGTCTCCTCCAA
TCGAAGGCTTTTGCATTGAGGTAGAATCGGCCCTGCGGGCACATGAGCTG
GTTAATGTTCGCGTTCTTTTCGctcaaaagaagaaagaggccaaAGCCGT
CGGATTACTTATGGCAGAGGCAGTGAAAGCAGAGCTTGTGCAGGTCATAG
GTCATACATATCTTTTGTACAGACCAGCAGATCCACCAAAAATTGATTTG
GCGAGACTCACAACGCCACTAAATGGCAAAGAATAAATGGGTCTGTTTTC
ACACCGATTGCTGTTTGTCTGGTGGCTATGGATGGAAAGCGGTACCAGCT
TTTTCTTGCGAGCGGGGCGACCTGCGACATCAGGTAGATGGGAAGCATTC
ACGTTGCAGTTGTCAGGTCGGCAGTGTGCTCTTGCTTTTCTTCCGCCTTT
AACCTcccgggccttggccgcaCTGGGATCCAACTTTGACGGCAGTGAAA
TcgatgatggagaggagagTGATGGTGAGATTGACGAAATTAGCACCAGC
ATGTCAACAAGTGAGCCAACGTCTGAGTCCCTGCCAGCATTCAAAGGCAA
GCATCGACGTGCCCTCAGGGCACTGGCAGGACGTAAAAAGGCAAACAAAT
CTCTTTTTACGATGCAACAATCAGAGTCTCCTCCAATCGAAGGCTTTTGC
ATTGAGGTAGAATCGGCCCTGCGGGCACATGAGCTGGTTAATGTTCGCGT
TCTTTTCGctcaaaagaagaaagaggccaaAGCCGTCGGATTACTTATGG
CAGAGGCAGTGAAAGCAGAGCTTGTGCAGGTCATAGGTCATACATATCTT
TTGTACAGACCAGCAGATCCACCAAAAATTGATTTGGCGAGACTCACAAC
GCCACTAAATGGCAAAGAATAAATGGGTCTGTTTTCACACCGATTGCTGT
TTGTCTGGTGGCTATGGATGGAAAGCGGTACCAGCTTTTTCTTGCGAGCG
GGGCGACCTGCGACATCAGGTAGATGGGAAGCATTCACGTTGCAGTTGTC
AGGTCGGCAGTGTGCTCTTGCTTTTCTTCCGCCTTTAACCTcccgggcct
tggccgcaCTGGGATCCAACTTTGACGGCAGTGAAATcgatgatggagag
gagagTGATGGTGAGATTGACGAAATTAGCACCAGCATGTCAACAAGTGA
GCCAACGTCTGAGTCCCTGCCAGCATTCAAAGGCAAGCATCGACGTGCCC
TCAGGGCACTGGCAGGACGTAAAAAGGCAAACAAATCTCTTTTTACGATG
CAACAATCAGAGTCTCCTCCAATCGAAGGCTTTTGCATTGAGGTAGAATC
GGCCCTGCGGGCACATGAGCTGGTTAATGTTCGCGTTCTTTTCGctcaaa
agaagaaagaggccaaAGCCGTCGGATTACTTATGGCAGAGGCAGTGAAA
GCAGAGCTTGTGCAGGTCATAGGTCATACATATCTTTTGTACAGACCAGC
AGATCCACCAAAAATTGATTTGGCGAGACTCACAACGCCACTAAATGGCA
AAGAATAAATGGGTCTGTTTTCACACCGATTGCTGTTTGTCTGGTGGCTA
TGGATGGAAAGCGGTACCAGCTTTTTCTTGCGAGCGGGGCGACCTGCGAC
ATCAGGTAGATGGGAAGCATTCACGTTGCAGTTGTCAGGTCGGCAGTGTG
CTCTTGCTTTTCTTCCGCCTTTAACCTcccgggccttggccgcaCTGGGA
TCCAACTTTGACGGCAGTGAAATcgatgatggagaggagagTGATGGTGA
GATTGACGAAATTAGCACCAGCATGTCAACAAGTGAGCCAACGTCTGAGT
CCCTGCCAGCATTCAAAGGCAAGCATCGACGTGCCCTCAGGGCACTGGCA
GGACGTAAAAAGGCAAACAAATCTCTTTTTACGATGCAACAATCAGAGTC
TCCTCCAATCGAAGGCTTTTGCATTGAGGTAGAATCGGCCCTGCGGGCAC
ATGAGCTGGTTAATGTTCGCGTTCTTTTCGctcaaaagaagaaagaggcc
aaAGCCGTCGGATTACTTATGGCAGAGGCAGTGAAAGCAGAGCTTGTGCA
GGTCATAGGTCATACATATCTTTTGTACAGACCAGCAGATCCACCAAAAA
TTGATTTGGCGAGACTCACAACGCCACTAAATGGCAAAGAATAA
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Synonyms
Publications