EWM29353.1, cds1318 (CDS) Nannochloropsis gaditana

Overview
NameEWM29353.1
Unique Namecds1318
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:323027..323156 +
Alignment locationCM002457.1:323247..323459 +
Alignment locationCM002457.1:323693..323799 +
Alignment locationCM002457.1:323904..324089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29353.1
Product23s rrna methyltransferase j
Orig transcript idgnl|cribi|Naga_100028g40.3289.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:323027..323156 +
CM002457.1supercontigCM002457.1:323247..323459 +
CM002457.1supercontigCM002457.1:323693..323799 +
CM002457.1supercontigCM002457.1:323904..324089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM
Homology
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|585111881|gb|EWM29353.1| (23s rrna methyltransferase j [Nannochloropsis gaditana])

HSP 1 Score: 430.639 bits (1106), Expect = 1.002e-152
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLTTPLNGKE 211
            MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLTTPLNGKE
Sbjct:    1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLTTPLNGKE 211          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|553190124|ref|XP_005855132.1| (hypothetical protein NGA_0112300, partial [Nannochloropsis gaditana CCMP526] >gi|422293931|gb|EKU21231.1| hypothetical protein NGA_0112300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 233.032 bits (593), Expect = 5.228e-76
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALA 114
            MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALA
Sbjct:    1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALA 114          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|397568970|gb|EJK46457.1| (hypothetical protein THAOC_34873 [Thalassiosira oceanica])

HSP 1 Score: 68.9366 bits (167), Expect = 3.212e-10
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 0
Query:   90 STSEPTSESLPAFKGKHRRALRALAGRKKANKSLF--------------TMQQS--ESPPIEG-FCIEVESALRAHELVNVRVL-FAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLT 204
            S+SE T +++    GK RRA+R++ GR+K+  ++                + QS  E   I+  F   V+ AL  HE+V +R+    QKKK AK VG  +A+ + A L QV+GHT LLYRP  PP+++L  L 
Sbjct:  288 SSSEETLDAM--INGKKRRAIRSIVGRQKSEGTVHEVAWPRDHAISKEDKVDQSFAERVAIDHRFLERVDEALWDHEIVLLRLKNVVQKKKGAKIVGERVAKILDAHLAQVVGHTALLYRPGFPPRLNLDELV 418          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|1072223085|gb|OEU07842.1| (dCMP_cyt_deam_1-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.1662 bits (165), Expect = 6.835e-10
Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = 0
Query:   72 IDDGEESD----GEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLF---------TMQQSESPPIEGFCI------EVESALRAHELVNVRVLFA-QKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLT 204
            ID G  +D    G +D     +   +   +S     G HRRALR +AGRKK + +L          T +       +G  +       +++ L   ELVN+R+  A  KKK AK +G  +A ++ A + QVIGHT LLYRP  P  +DL  L+
Sbjct:  230 IDVGMANDKGCAGIVDAFVKRILPKDYDDQSYAHMTGGHRRALRTIAGRKKTDNTLNQISWNTKGRTEKAKNEEATDGLALPAEWMENLDAVLWRDELVNLRLNKAVGKKKLAKHLGERIAASLGAHVAQVIGHTVLLYRPGMPAVLDLDALS 382          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|504717696|ref|WP_014904798.1| (RNA-binding protein [Desulfosporosinus meridiei] >gi|402255614|gb|AFQ45889.1| putative RNA-binding protein, YhbY family [Desulfosporosinus meridiei DSM 13257])

HSP 1 Score: 59.6918 bits (143), Expect = 2.508e-8
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0
Query:  102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPA-DPPKIDLAR 202
             KGK +R LRA+      N+ +  +Q  +S   E    +    + A EL+  RVL     +E KAV  ++AE   +ELVQVIG  +LLYRP+ D P I+L +
Sbjct:    2 LKGKQKRFLRAMG-----NEMVPILQVGKSGITESVVTQTNETIEARELIKGRVL-QNCLEEPKAVAAVLAEQTGSELVQVIGRNFLLYRPSKDKPMIELPK 97          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|1210526449|dbj|GAX14777.1| (diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fistulifera solaris])

HSP 1 Score: 62.3882 bits (150), Expect = 5.431e-8
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 0
Query:  104 GKHRRALRALAGRKKA---------------NKSLFTMQQSESPPIEGFCIEVESALRA--------------HELVNVRVLFA-QKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLT 204
            G  R ALR++AGR+KA               +  L+ +Q+         CI +   ++               HELV VR+  A  KKK+AK VG ++A  ++A + Q +GHT LLYRP  PP ++L  L 
Sbjct:  264 GAMRSALRSVAGRQKAAGTLPEVSWAKDMLVDSELWILQEQRVEDDTDKCIAMYKTIKIKPEWMEHLDQLLWDHELVQVRLNNAVNKKKDAKLVGQVIAAQLQAHVTQTVGHTCLLYRPGVPPVLNLEALV 394          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|754580877|ref|WP_041973094.1| (RNA-binding protein [Geobacter sp. OR-1] >gi|729032012|dbj|GAM11043.1| putative RNA-binding protein YqeI [Geobacter sp. OR-1])

HSP 1 Score: 58.5362 bits (140), Expect = 6.140e-8
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 0
Query:  104 GKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFA--QKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDL 200
            GK +R LRAL       K + T+ +SE    E    E   AL AHELV +++L +    + EA A   L+A+A KAE+ Q++G T+LLYR A  PKI L
Sbjct:    4 GKQKRFLRALG---HGLKPIITIGKSEIS--EALAKETSIALDAHELVKIKLLESCIMDRHEAAA---LLADASKAEIAQILGRTFLLYRQAKEPKIQL 94          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|736593169|ref|WP_034601962.1| (RNA-binding protein [Desulfosporosinus sp. HMP52] >gi|695877316|gb|KGK83280.1| RNA-binding protein [Desulfosporosinus sp. HMP52])

HSP 1 Score: 58.151 bits (139), Expect = 8.534e-8
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 0
Query:  102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPA-DPPKIDLAR 202
             KGK +R LRA+      N+ +  +Q  +S   E    +    + + EL+  RVL     +E K+V  ++AE   +ELVQVIG  +LLYRP+ D P I+L +
Sbjct:    2 LKGKQKRFLRAMG-----NEMVPILQVGKSGITEAVVTQTNETIESRELIKGRVL-QNCAEEPKSVAAVLAEQTGSELVQVIGRNFLLYRPSKDKPMIELPK 97          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|1086823463|emb|SDI02424.1| (RNA-binding protein [Desulfosporosinus hippei DSM 8344])

HSP 1 Score: 57.3806 bits (137), Expect = 1.432e-7
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 0
Query:  102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPA-DPPKIDLAR 202
             KGK +R LRA+      N+ +  +Q  +S   E    +    + + EL+  RVL     +E K+V  ++AE   +ELVQVIG  +LLYRP+ D P I+L +
Sbjct:    2 LKGKQKRFLRAMG-----NEMVPILQVGKSGITEAVVTQTNETIESRELIKGRVL-QNCLEEPKSVAAVLAEQTGSELVQVIGRNFLLYRPSKDKPMIELPK 97          
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|551549550|ref|XP_005762352.1| (hypothetical protein EMIHUDRAFT_248572 [Emiliania huxleyi CCMP1516] >gi|551550256|ref|XP_005762658.1| hypothetical protein EMIHUDRAFT_215906 [Emiliania huxleyi CCMP1516] >gi|551574723|ref|XP_005773116.1| hypothetical protein EMIHUDRAFT_241990 [Emiliania huxleyi CCMP1516] >gi|485611363|gb|EOD09923.1| hypothetical protein EMIHUDRAFT_248572 [Emiliania huxleyi CCMP1516] >gi|485611764|gb|EOD10229.1| hypothetical protein EMIHUDRAFT_215906 [Emiliania huxleyi CCMP1516] >gi|485624661|gb|EOD20687.1| hypothetical protein EMIHUDRAFT_241990 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 57.7658 bits (138), Expect = 1.773e-7
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 0
Query:  102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYR 191
              G  RR LRA AGR  + K L      +  P  G   E+E AL   ELV  ++  A+KK EA+++   +A  + AE+ QVIGHT LLYR
Sbjct:   19 LTGAQRRYLRAHAGRLTSEKLLPRALVLD--PAAGSLGEIEDALSTRELVRCKLGAAKKKAEARSMATELATRLDAEVAQVIGHTCLLYR 106          
The following BLAST results are available for this feature:
BLAST of EWM29353.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111881|gb|EWM29353.1|1.002e-152100.0023s rrna methyltransferase j [Nannochloropsis gadi... [more]
gi|553190124|ref|XP_005855132.1|5.228e-76100.00hypothetical protein NGA_0112300, partial [Nannoch... [more]
gi|397568970|gb|EJK46457.1|3.212e-1037.59hypothetical protein THAOC_34873 [Thalassiosira oc... [more]
gi|1072223085|gb|OEU07842.1|6.835e-1033.99dCMP_cyt_deam_1-domain-containing protein [Fragila... [more]
gi|504717696|ref|WP_014904798.1|2.508e-838.24RNA-binding protein [Desulfosporosinus meridiei] >... [more]
gi|1210526449|dbj|GAX14777.1|5.431e-832.82diaminohydroxyphosphoribosylaminopyrimidine deamin... [more]
gi|754580877|ref|WP_041973094.1|6.140e-842.42RNA-binding protein [Geobacter sp. OR-1] >gi|72903... [more]
gi|736593169|ref|WP_034601962.1|8.534e-836.27RNA-binding protein [Desulfosporosinus sp. HMP52] ... [more]
gi|1086823463|emb|SDI02424.1|1.432e-736.27RNA-binding protein [Desulfosporosinus hippei DSM ... [more]
gi|551549550|ref|XP_005762352.1|1.773e-742.22hypothetical protein EMIHUDRAFT_248572 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1320rna1320Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications