EWM29353.1, cds1318 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|585111881|gb|EWM29353.1| (23s rrna methyltransferase j [Nannochloropsis gaditana]) HSP 1 Score: 430.639 bits (1106), Expect = 1.002e-152 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query: 1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLTTPLNGKE 211
MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLTTPLNGKE
Sbjct: 1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLTTPLNGKE 211
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|553190124|ref|XP_005855132.1| (hypothetical protein NGA_0112300, partial [Nannochloropsis gaditana CCMP526] >gi|422293931|gb|EKU21231.1| hypothetical protein NGA_0112300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 233.032 bits (593), Expect = 5.228e-76 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query: 1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALA 114
MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALA
Sbjct: 1 MGLFSHRLLFVWWLWMESGTSFFLRAGRPATSGRWEAFTLQLSGRQCALAFLPPLTSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLPAFKGKHRRALRALA 114
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|397568970|gb|EJK46457.1| (hypothetical protein THAOC_34873 [Thalassiosira oceanica]) HSP 1 Score: 68.9366 bits (167), Expect = 3.212e-10 Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 0
Query: 90 STSEPTSESLPAFKGKHRRALRALAGRKKANKSLF--------------TMQQS--ESPPIEG-FCIEVESALRAHELVNVRVL-FAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLT 204
S+SE T +++ GK RRA+R++ GR+K+ ++ + QS E I+ F V+ AL HE+V +R+ QKKK AK VG +A+ + A L QV+GHT LLYRP PP+++L L
Sbjct: 288 SSSEETLDAM--INGKKRRAIRSIVGRQKSEGTVHEVAWPRDHAISKEDKVDQSFAERVAIDHRFLERVDEALWDHEIVLLRLKNVVQKKKGAKIVGERVAKILDAHLAQVVGHTALLYRPGFPPRLNLDELV 418
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|1072223085|gb|OEU07842.1| (dCMP_cyt_deam_1-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.1662 bits (165), Expect = 6.835e-10 Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = 0
Query: 72 IDDGEESD----GEIDEISTSMSTSEPTSESLPAFKGKHRRALRALAGRKKANKSLF---------TMQQSESPPIEGFCI------EVESALRAHELVNVRVLFA-QKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLT 204
ID G +D G +D + + +S G HRRALR +AGRKK + +L T + +G + +++ L ELVN+R+ A KKK AK +G +A ++ A + QVIGHT LLYRP P +DL L+
Sbjct: 230 IDVGMANDKGCAGIVDAFVKRILPKDYDDQSYAHMTGGHRRALRTIAGRKKTDNTLNQISWNTKGRTEKAKNEEATDGLALPAEWMENLDAVLWRDELVNLRLNKAVGKKKLAKHLGERIAASLGAHVAQVIGHTVLLYRPGMPAVLDLDALS 382
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|504717696|ref|WP_014904798.1| (RNA-binding protein [Desulfosporosinus meridiei] >gi|402255614|gb|AFQ45889.1| putative RNA-binding protein, YhbY family [Desulfosporosinus meridiei DSM 13257]) HSP 1 Score: 59.6918 bits (143), Expect = 2.508e-8 Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0
Query: 102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPA-DPPKIDLAR 202
KGK +R LRA+ N+ + +Q +S E + + A EL+ RVL +E KAV ++AE +ELVQVIG +LLYRP+ D P I+L +
Sbjct: 2 LKGKQKRFLRAMG-----NEMVPILQVGKSGITESVVTQTNETIEARELIKGRVL-QNCLEEPKAVAAVLAEQTGSELVQVIGRNFLLYRPSKDKPMIELPK 97
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|1210526449|dbj|GAX14777.1| (diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fistulifera solaris]) HSP 1 Score: 62.3882 bits (150), Expect = 5.431e-8 Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 0
Query: 104 GKHRRALRALAGRKKA---------------NKSLFTMQQSESPPIEGFCIEVESALRA--------------HELVNVRVLFA-QKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLT 204
G R ALR++AGR+KA + L+ +Q+ CI + ++ HELV VR+ A KKK+AK VG ++A ++A + Q +GHT LLYRP PP ++L L
Sbjct: 264 GAMRSALRSVAGRQKAAGTLPEVSWAKDMLVDSELWILQEQRVEDDTDKCIAMYKTIKIKPEWMEHLDQLLWDHELVQVRLNNAVNKKKDAKLVGQVIAAQLQAHVTQTVGHTCLLYRPGVPPVLNLEALV 394
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|754580877|ref|WP_041973094.1| (RNA-binding protein [Geobacter sp. OR-1] >gi|729032012|dbj|GAM11043.1| putative RNA-binding protein YqeI [Geobacter sp. OR-1]) HSP 1 Score: 58.5362 bits (140), Expect = 6.140e-8 Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 0
Query: 104 GKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFA--QKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDL 200
GK +R LRAL K + T+ +SE E E AL AHELV +++L + + EA A L+A+A KAE+ Q++G T+LLYR A PKI L
Sbjct: 4 GKQKRFLRALG---HGLKPIITIGKSEIS--EALAKETSIALDAHELVKIKLLESCIMDRHEAAA---LLADASKAEIAQILGRTFLLYRQAKEPKIQL 94
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|736593169|ref|WP_034601962.1| (RNA-binding protein [Desulfosporosinus sp. HMP52] >gi|695877316|gb|KGK83280.1| RNA-binding protein [Desulfosporosinus sp. HMP52]) HSP 1 Score: 58.151 bits (139), Expect = 8.534e-8 Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 0
Query: 102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPA-DPPKIDLAR 202
KGK +R LRA+ N+ + +Q +S E + + + EL+ RVL +E K+V ++AE +ELVQVIG +LLYRP+ D P I+L +
Sbjct: 2 LKGKQKRFLRAMG-----NEMVPILQVGKSGITEAVVTQTNETIESRELIKGRVL-QNCAEEPKSVAAVLAEQTGSELVQVIGRNFLLYRPSKDKPMIELPK 97
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|1086823463|emb|SDI02424.1| (RNA-binding protein [Desulfosporosinus hippei DSM 8344]) HSP 1 Score: 57.3806 bits (137), Expect = 1.432e-7 Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 0
Query: 102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPA-DPPKIDLAR 202
KGK +R LRA+ N+ + +Q +S E + + + EL+ RVL +E K+V ++AE +ELVQVIG +LLYRP+ D P I+L +
Sbjct: 2 LKGKQKRFLRAMG-----NEMVPILQVGKSGITEAVVTQTNETIESRELIKGRVL-QNCLEEPKSVAAVLAEQTGSELVQVIGRNFLLYRPSKDKPMIELPK 97
BLAST of EWM29353.1 vs. NCBI_GenBank
Match: gi|551549550|ref|XP_005762352.1| (hypothetical protein EMIHUDRAFT_248572 [Emiliania huxleyi CCMP1516] >gi|551550256|ref|XP_005762658.1| hypothetical protein EMIHUDRAFT_215906 [Emiliania huxleyi CCMP1516] >gi|551574723|ref|XP_005773116.1| hypothetical protein EMIHUDRAFT_241990 [Emiliania huxleyi CCMP1516] >gi|485611363|gb|EOD09923.1| hypothetical protein EMIHUDRAFT_248572 [Emiliania huxleyi CCMP1516] >gi|485611764|gb|EOD10229.1| hypothetical protein EMIHUDRAFT_215906 [Emiliania huxleyi CCMP1516] >gi|485624661|gb|EOD20687.1| hypothetical protein EMIHUDRAFT_241990 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 57.7658 bits (138), Expect = 1.773e-7 Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 0
Query: 102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYR 191
G RR LRA AGR + K L + P G E+E AL ELV ++ A+KK EA+++ +A + AE+ QVIGHT LLYR
Sbjct: 19 LTGAQRRYLRAHAGRLTSEKLLPRALVLD--PAAGSLGEIEDALSTRELVRCKLGAAKKKAEARSMATELATRLDAEVAQVIGHTCLLYR 106 The following BLAST results are available for this feature:
BLAST of EWM29353.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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