rna1317, rna1317 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1317
Unique Name	rna1317
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3501
Alignment location	CM002457.1:317526..318770 +

Link to JBrowse

Properties


Property Name	Value
Product	Cystinosin/ERS1p repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100028g37.3313.mrna
Orig protein id	gnl\|cribi\|Naga_100028g37.3313
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:317526..318770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g37	gene1271	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1317	rna1317-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29377.1	cds1315	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:317526..318770+
coding sequence from alignment at CM002457.1:317526..318770+

mRNA sequence

>rna1317 ID=rna1317|Name=rna1317|organism=Nannochloropsis gaditana|type=mRNA|length=3501bp
TGCGGACAGACTGTCTCGTTTGGCAGGGTCCCTCCAGGGCACTACTGTGG
CTTCTGCGCCTTGCCCCAGCCATTATCGCGGGGCGCTAGCCCTGGCACTT
TCCACATTAATACATTGGAGGAGACTGCGGCTGGATGTGAAACATGCCTA
TGTATTTTATTTCGTGACAAACGTTATTTCCTCTCGTGGCAAGGTTTTAC
AAGGATGGTGTCTCCTAGTGTGTCACCAGGCGGATACTTTGGAAGGACCC
CTAAACTGGACGTCCGAAGCGTTCTGTCCCCTCCCTCGCTCGATAAAGAG
CTAACTATCACCTTGCGTTACCCACTCGAAGAAGGAGAAGTTACGGACAA
AATTTGCATTGCTTCAAGACGCGACTGACTTTCCATCCCTCACGCTATCC
GGCCTCTTCCCCCCCAACTCTTGCAGCGAGTCGCAAGGCCTCATGACGCT
GTGGACGAGTCCCGTCCCCATGCACATGGCAGGCAAGCAGGTGACAGCAC
CGCGCATGGAGACCGCGGTTCAAGACGGGGAGCCTTCCAACACAGTGTCG
GTAGTACTCGCTTCCGGCGCAGGCGATGGGGCGGGTAGCAACCTGGGCAG
CGGTGCATCGAACAATTTTACTCACAGCAACAGCAGTGCGAGCGGCAGTA
CGACCAGTACTGCTCCCCACCAACGACGACAAACACTAGCTAATGTCCCA
TCTGCCGCCGAAGTGCATGGTAGGCAGGAGAAGTGGCTGGAATTTGCACC
AACTTCTCCCCAGCGCCGTGCTTCCTTTGTGGACGAGCCGGGAGTTGTGG
ATGGGAACCCCTTTGAGATCTTTAAGGAGCCTGCGCGGGCTGACCATTTT
GGAAGTCAAAGTTTTTACGAAGCAGGGGCATCCTACTCGGCGAAGCAACA
TGCCCCGCCTCCTTCTGCAGCATCCTCGGTAGTGTCCCGCCCTGCCTCGG
CGACTCGCCTGACTGCGTCGTCCATCCCACTGGGCCCGGAGAGGCTTGAC
TCGAGCTACCGCCCTTCTTCCAGCACAGGCAATCCATTCTGCGAAGCTCC
TTTGAGCCCGATCCGCTACAACAAGCCCATTGCCAAGGTGGAGCTCTCCC
CTCAGAGCACCGCCTTGTCGGCCGTGGCGTTCTCAGCGCTTGACCCTCTG
AAACGCACAGAATCGCCGACCGCGTCTGTGCCCTTGGACCAGCTCAAAAT
CTCGGCCTACAACCGGGAACAGGAGGTGCTGGCGGCGGCAAAGGCTGCAG
AAGAGCAAGGGAAGCAGTTTCAGGAGTCAGAACACTACAGACGACAACTG
CAGCTGCAGCAGCCACAGCCCACAGCACATTTCCAACAGAACTTGCCACA
GCCACAAGGACAGGCGGAACAACCACACCCACAGCAAGGGGACTGGAGCG
CGTGGCCCATGCAGCAAGGTGTGCTTCAGGCCGCCAGCCAAGCCCAGCCT
GCGTCGTCCACGGAATGGGATGCTTTCGGTGCTTCTCCGACGGTCTTCCC
GCAAAAGGCACCGCCCTCGCAGCCGACCTTCGACAACAACTTTGGGTGGC
AATCCATCCCCGGGGCCTTCACCACGACCACTCCCAACAGCGACGATTTC
AGGGTCCTGGGCGGGCATGCGGCGGGAGGAGGGGAGGACGGGGGGGAGGG
AAAGAGGGGAGGGGGCGCGATCTTCGACCCCGTCCGTCAGAAGTCCCTGG
CAGATGCTTCCTTTGATTTAAGTGTGGGGGGATTTTTCCCAGAGGAACCA
ACGGGTGCCCACACGAATGCAGGGACGGGGAGCAGGAGGAGTAGCGGGGC
AGGACACGCGGAGGAGGAGGAGGAGGAGGGGGGTTTGGAGGACCATGCCG
AAGAGGAGGACGACGATTCGATGGGGGGCGACGGGACTGGGGAGTTGGAG
ATGCAAGAGGAGCATTTCGGGGAGGGCGGGAGTGGATTAGAAGGGAGGCA
GCGGTCGGCGTCGGGTATGTACTACGAGGTGGCCTTTACGGCGCCCACCA
CCTTTGGCATGCTCTTGGAGCGTAAGGACGAGTGGGTGCGCGGGTCGGTG
GCGCGCCGGGAGAGGACGGTGGTGACCTTGGTGGTGGAGGGGGGGGAGGC
AGAGGCCAAGGGTGTGGCGGTGGGAAGCATGATCGTCTCGATAAATGGGG
AGGAGGTGACGGGCTTGACATACAAGGAGACCCTGGAGCGGATCAAGGGG
CAGGCGCGGCCCATGCAGGTGGTATTTGAGCGTGAGTCTTTGAATGAGGA
CGTGCTTCAGGGGTATTTCTTTGTTTCCAAGGGGCCCTTCTTCTCGAACC
CGACGACCATGGACAAATGGAAGCGTAAGTACATCGTGCTGGGAGGGCCG
ATTGCCAAGAAGAACGTGTTGCAGATTTATGACTCCAAACGGGCCTATCA
CAACACTGTTGTGGCCTTGTTTCAACGAAAAAGACCGTCGCATCGGGTCA
AGACGTACGCTCTGACCTATGCCTTTAAGCTCTCTCAGCTGCAAGAACGG
CGGATGGATGGACATACCGCTCCGTTGAAATTTTTCGCCTTTATGACCCC
GGCTGCCAGGTTCAAGTCGGTGCGGATCGCGTCGGAGACGAGAAAAAGCG
TGCAAGGCTTACAAGAGAGGTTCAGCCGTTTCGCGGGCAAATCGACACGC
TAACGAGACGAGCGCAATGAATGGAAATTCATTTTTATTTGGAATAGTTT
GTCGAGGGAAGGGGAATAGAGAATCTGGGTCGCCAAGGGAGAAGGAAGAT
TTGGGTTGGAAATGGACGTGATGGGATTGCGCGTCCATTACACTATGTCC
AAATGAAGACATGACGGGGGAAATTGAAAGAGAGATGGAAAGAGGATGGG
CTTTGCATCCGGGGGAAGGGAGCAGAAGATGGGTAGGCGGTGGATAAATC
CCTTACCTGAAAGGAAGGACGCGCATGAACGAGCAGCCATCTTGGGGAGA
GATCAGGGGAAAGGGGAAGTTGCAGAGGCCTAGGCTTAAGGCGCGAAAGC
TTCGACAGGGGATGTCGGCCATGCATGTGGAAAGCTTCGTGGGATAGTGT
GGTGGCATCCGGAGGAGTTGGAAGTCCTCCGGGTACCGGGATGTAAATTT
TGTTAACTTGCCGTATGCAAAAAATGTATGTAGAGGTGCCATCAAGACAG
TATTTGTGCTTGACCATGGAGCATTGGCCAATGCGCGATGATTCACCACG
GGCACATTTCTATGCGAGGTCATCGGAGGAAATTGCTTGAAGTCAAGAGG
AGAGAGACAGAGGTCTCATAAGAGATTCCAGGAAACAGAAAGCAGAAGCA
ACAGTAGAGATCAAAGGGGATGGCTTGCAGGACAAAATCGCCAGCAGTTT
TATTCTTTGGGTCTTGTGCGTCCGATTGTGCTCCAAACCTTTTGTGTGCA
TCTTGTATGCTCAATTACCACAGTCTATGTACAATGTCGGCCCCTTAGCA
TCCATCAATTCAGTAGCCACGGCCTGATCCCGCGTTCTTCTCTTGGTATC
G

protein sequence of rna1317

>rna1317-protein ID=rna1317-protein|Name=rna1317|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MYESGPSYFAWLTAGWSRRDDGRGTRLEERDGCLAIVGDSRFGFGCCTIT
PVACSMARIFGLALVALAVSSTTRAFATGPQNVFKSTIHGGLRPRKTPML
ASLCSAPHHHVLNVGKGMPVSNRPLPSSSLAAAPSSISSIVPILFRRGGV
AIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSS
SMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDE
PSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLL
LNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFN
GALVAQYYLYRDRASMKDA

mRNA from alignment at CM002457.1:317526..318770+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1317 ID=rna1317|Name=rna1317|organism=Nannochloropsis gaditana|type=mRNA|length=1245bp|location=Sequence derived from alignment at CM002457.1:317526..318770+ (Nannochloropsis gaditana)
ATGTATGAGAGTGGTCCCTCCTATTTTGCCTGGCTGACCGCGGGGTGGTC
GAGGCGGGACGACGGGCGGGGCACacgcttggaggagagggatggcTGGT
ACGTCATCGCCAGAACCCTTCAACACTTTCACTTGACCTGGCAACTGCCC
ATCAATGTTATTGAATTGAAAAATCGTGCGCAGCCGGGGATGAAAGGGCT
TCTCATTGAAAATCCGCCAATTTTTTTTCACAGCCTTGCAATAGTCGGAG
ACAGTCGGTTTGGCTTTGGTTGTTGCACGATTACGCCCGTGGCCTGTTCA
ATGGCTCGAATCTTTGGTTTGGCTTTGGTGGCCCTGGCTGTTAGCAGCAC
TACCCGTGCTTTTGCCACAGGCCCACAAAATGTTTTTAAATCTACAATCC
ATGGTGGGCTACGACCTCGGAAAACTCCCATGCTGGCCTCGCTTTGCTCC
GCGCCACATCATCACGTCTTGAATGTCGGAAAAGGGATGCCTGTCTCGAa
ccgccctctcccatcctcctccttggctgcCGCTCCTTCATCTATTTCCT
CCATTGTACCGATTTTATTTCGCCGAGGTGGTGTAGCgatccccgccgcc
cctggCAAGGGCTTCGACTTCCTCACTCTCTTGAGCAGAACCACTGGGTA
TGTCGTCATTGCTGGCTCGATGCTCTTCAAGCTCCCCCAGGCCGCGCGCA
TTTTTCGCAAGAAATCGGCTGCAGGCCTTTCATCTTCCATGTACATCCTG
GAAACCATAGGAATAGCCATGTCGCTGGCTTTTTCCATCCGAAACGCCTT
CCCATTCTCCACCTACGGCGAGACCGTCTTCATTGTGCTGCAGAACGTCG
TGATCATGGCTGGTATCTCCCTGTACTCGGATGAGCCCAgtcctcccatc
cttgccctttccctcctccttgcctcgctCTTTTTTGCGTACACAATCAG
CCCCCTCGCCCCGATGCTACTTGTATCGATTCTTCAGACCGTCTCGATCC
CTCTCTTGAATTTCAGTCGAGTGCCACAGCTCCTTCTCAACTACCGCAAC
AAGAGCACGGGAGAGCTTGCGCCATCCACCTTGATCCTCCAGGCCGTCGG
CAACGTGGCCCGCATCTTCACAACCATGGTCCAGCTTCAAAATACTCTAT
ACCTCCTTAGTTGTGTGGCGGCGTTCATTTTCAATGGGGCGCTAGTAGCG
CAGTACTATCTCTACCGTGACAGAGCGTCGATGAAGGACGCGTGA

Coding sequence (CDS) from alignment at CM002457.1:317526..318770+

>rna1317 ID=rna1317|Name=rna1317|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002457.1:317526..318770+ (Nannochloropsis gaditana)
ATGTATGAGAGTGGTCCCTCCTATTTTGCCTGGCTGACCGCGGGGTGGTC
GAGGCGGGACGACGGGCGGGGCACacgcttggaggagagggatggcTGCC
TTGCAATAGTCGGAGACAGTCGGTTTGGCTTTGGTTGTTGCACGATTACG
CCCGTGGCCTGTTCAATGGCTCGAATCTTTGGTTTGGCTTTGGTGGCCCT
GGCTGTTAGCAGCACTACCCGTGCTTTTGCCACAGGCCCACAAAATGTTT
TTAAATCTACAATCCATGGTGGGCTACGACCTCGGAAAACTCCCATGCTG
GCCTCGCTTTGCTCCGCGCCACATCATCACGTCTTGAATGTCGGAAAAGG
GATGCCTGTCTCGAaccgccctctcccatcctcctccttggctgcCGCTC
CTTCATCTATTTCCTCCATTGTACCGATTTTATTTCGCCGAGGTGGTGTA
GCgatccccgccgcccctggCAAGGGCTTCGACTTCCTCACTCTCTTGAG
CAGAACCACTGGGTATGTCGTCATTGCTGGCTCGATGCTCTTCAAGCTCC
CCCAGGCCGCGCGCATTTTTCGCAAGAAATCGGCTGCAGGCCTTTCATCT
TCCATGTACATCCTGGAAACCATAGGAATAGCCATGTCGCTGGCTTTTTC
CATCCGAAACGCCTTCCCATTCTCCACCTACGGCGAGACCGTCTTCATTG
TGCTGCAGAACGTCGTGATCATGGCTGGTATCTCCCTGTACTCGGATGAG
CCCAgtcctcccatccttgccctttccctcctccttgcctcgctCTTTTT
TGCGTACACAATCAGCCCCCTCGCCCCGATGCTACTTGTATCGATTCTTC
AGACCGTCTCGATCCCTCTCTTGAATTTCAGTCGAGTGCCACAGCTCCTT
CTCAACTACCGCAACAAGAGCACGGGAGAGCTTGCGCCATCCACCTTGAT
CCTCCAGGCCGTCGGCAACGTGGCCCGCATCTTCACAACCATGGTCCAGC
TTCAAAATACTCTATACCTCCTTAGTTGTGTGGCGGCGTTCATTTTCAAT
GGGGCGCTAGTAGCGCAGTACTATCTCTACCGTGACAGAGCGTCGATGAA
GGACGCGTGAATGTATGAGAGTGGTCCCTCCTATTTTGCCTGGCTGACCG
CGGGGTGGTCGAGGCGGGACGACGGGCGGGGCACacgcttggaggagagg
gatggcTGCCTTGCAATAGTCGGAGACAGTCGGTTTGGCTTTGGTTGTTG
CACGATTACGCCCGTGGCCTGTTCAATGGCTCGAATCTTTGGTTTGGCTT
TGGTGGCCCTGGCTGTTAGCAGCACTACCCGTGCTTTTGCCACAGGCCCA
CAAAATGTTTTTAAATCTACAATCCATGGTGGGCTACGACCTCGGAAAAC
TCCCATGCTGGCCTCGCTTTGCTCCGCGCCACATCATCACGTCTTGAATG
TCGGAAAAGGGATGCCTGTCTCGAaccgccctctcccatcctcctccttg
gctgcCGCTCCTTCATCTATTTCCTCCATTGTACCGATTTTATTTCGCCG
AGGTGGTGTAGCgatccccgccgcccctggCAAGGGCTTCGACTTCCTCA
CTCTCTTGAGCAGAACCACTGGGTATGTCGTCATTGCTGGCTCGATGCTC
TTCAAGCTCCCCCAGGCCGCGCGCATTTTTCGCAAGAAATCGGCTGCAGG
CCTTTCATCTTCCATGTACATCCTGGAAACCATAGGAATAGCCATGTCGC
TGGCTTTTTCCATCCGAAACGCCTTCCCATTCTCCACCTACGGCGAGACC
GTCTTCATTGTGCTGCAGAACGTCGTGATCATGGCTGGTATCTCCCTGTA
CTCGGATGAGCCCAgtcctcccatccttgccctttccctcctccttgcct
cgctCTTTTTTGCGTACACAATCAGCCCCCTCGCCCCGATGCTACTTGTA
TCGATTCTTCAGACCGTCTCGATCCCTCTCTTGAATTTCAGTCGAGTGCC
ACAGCTCCTTCTCAACTACCGCAACAAGAGCACGGGAGAGCTTGCGCCAT
CCACCTTGATCCTCCAGGCCGTCGGCAACGTGGCCCGCATCTTCACAACC
ATGGTCCAGCTTCAAAATACTCTATACCTCCTTAGTTGTGTGGCGGCGTT
CATTTTCAATGGGGCGCTAGTAGCGCAGTACTATCTCTACCGTGACAGAG
CGTCGATGAAGGACGCGTGA

Synonyms

Publications