EWM29377.1, cds1315 (CDS) Nannochloropsis gaditana

Overview
NameEWM29377.1
Unique Namecds1315
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:317526..317623 +
Alignment locationCM002457.1:317759..318770 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29377.1
ProductCystinosin/ERS1p repeat containing protein
Orig transcript idgnl|cribi|Naga_100028g37.3313.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:317526..317623 +
CM002457.1supercontigCM002457.1:317759..318770 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR016817MannP-dilichol_defect-1
IPR006603PQ-loop_rpt
Homology
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|585111905|gb|EWM29377.1| (Cystinosin/ERS1p repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MYESGPSYFAWLTAGWSRRDDGRGTRLEERDGCLAIVGDSRFGFGCCTITPVACSMARIFGLALVALAVSSTTRAFATGPQNVFKSTIHGGLRPRKTPMLASLCSAPHHHVLNVGKGMPVSNRPLPSSSLAAAPSSISSIVPILFRRGGVAIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRASMKDA 369
            MYESGPSYFAWLTAGWSRRDDGRGTRLEERDGCLAIVGDSRFGFGCCTITPVACSMARIFGLALVALAVSSTTRAFATGPQNVFKSTIHGGLRPRKTPMLASLCSAPHHHVLNVGKGMPVSNRPLPSSSLAAAPSSISSIVPILFRRGGVAIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRASMKDA
Sbjct:    1 MYESGPSYFAWLTAGWSRRDDGRGTRLEERDGCLAIVGDSRFGFGCCTITPVACSMARIFGLALVALAVSSTTRAFATGPQNVFKSTIHGGLRPRKTPMLASLCSAPHHHVLNVGKGMPVSNRPLPSSSLAAAPSSISSIVPILFRRGGVAIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRASMKDA 369          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|553190127|ref|XP_005855133.1| (mannose-p-dolichol utilization defect 1 [Nannochloropsis gaditana CCMP526] >gi|422293932|gb|EKU21232.1| mannose-p-dolichol utilization defect 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 487.649 bits (1254), Expect = 6.529e-172
Identity = 250/252 (99.21%), Postives = 250/252 (99.21%), Query Frame = 0
Query:  118 MPVSNRPLPSSSLAAAPSSISSIVPILFRRGGVAIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRASMKDA 369
            MPVSNRPLPSSSLAAAPSSISSI PILFRRGGVAIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRA MKDA
Sbjct:    1 MPVSNRPLPSSSLAAAPSSISSIAPILFRRGGVAIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRAPMKDA 252          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|544216519|ref|XP_005538404.1| (similar to mannose-P-dolichol utilization defect 1 protein [Cyanidioschyzon merolae strain 10D] >gi|449018966|dbj|BAM82368.1| similar to mannose-P-dolichol utilization defect 1 protein [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 164.081 bits (414), Expect = 2.480e-44
Identity = 88/200 (44.00%), Postives = 133/200 (66.50%), Query Frame = 0
Query:  163 LTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISP-LAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTL-YLLSCVAAFIFNGALVAQYYLY 360
            L LLS+  G++VI GS L+K+PQ  RI R +SA G+S + Y+ ET+  A S  +++R  FPF T+GE+ FI++QNV+I+  +S +   P        L   +L     +SP LAP ++V++ Q VSIPLLN SR+PQ+++N + ++TGEL+ +T++LQ +GN AR+FTT+V+L   L YLLS + A   N  LV QY+ +
Sbjct:   96 LGLLSQVLGWLVIIGSSLYKVPQVVRILRVRSAKGISVTTYVCETVSTACSFCYALRQRFPFDTFGESGFILIQNVMILVLMSHFDARPRRWATLAILGSITLLMGVLLSPRLAPPVVVTVAQAVSIPLLNLSRIPQIVMNAQLRTTGELSITTMLLQLLGNAARLFTTLVRLDGNLPYLLSAIVALALNSILVYQYFRF 295          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|545709189|ref|XP_005706905.1| (lysosomal cysteine transporter, LCT family [Galdieria sulphuraria] >gi|452823374|gb|EME30385.1| lysosomal cysteine transporter, LCT family [Galdieria sulphuraria])

HSP 1 Score: 159.458 bits (402), Expect = 7.256e-43
Identity = 88/216 (40.74%), Postives = 128/216 (59.26%), Query Frame = 0
Query:  146 RRGGVAIPAAPGKGFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYR 361
            ++  +++P+      + L   S   GYVVI  S  +K+PQ ARI  KKS+ G+S SMY+LE+IGI  SL + I+  FP+ T+ E++ I +QN++I   +  Y++        L   L  L  A  +    P+  + +LQ  S PL+N S++PQ+L N RN+STGEL+P TL  Q  GNVAR+FTT+VQL+N  +L S   + I N  L  QY  YR
Sbjct:   43 QQSSISLPSPDVVRCNHLKSTSSLIGYVVIFCSTFYKVPQIARIITKKSSKGISLSMYVLESIGIYFSLCYCIQAKFPWETFAESICIFVQNIIITLFLYKYTERKDGRNRNLVYALIPLMGASLLCIRLPIHWLQLLQVCSSPLMNISKIPQILRNERNQSTGELSPITLSFQLAGNVARVFTTIVQLRNRWFLTSISISLILNAILGLQYIRYR 258          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|983147061|gb|KWU45024.1| (mannose-P-dolichol utilization defect 1 protein, partial [Rhodotorula sp. JG-1b])

HSP 1 Score: 139.043 bits (349), Expect = 1.771e-35
Identity = 84/198 (42.42%), Postives = 124/198 (62.63%), Query Frame = 0
Query:  166 LSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETI--GIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPS-PPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLY 360
            LS+  G  ++AG  + KLPQ   + R  SA GLS S YIL+T+  GI  S+A+++RN FPFSTYGE  F++ QN V++  I+ YS  P+ P ++ L  LL SL +A     L P   +S LQT++IP+   S+VPQ++ NY+ KSTG+L+   +I    G +AR+FTTM + ++ L L +   A + NG + AQ  +Y
Sbjct:   44 LSKVLGLGMVAGGAILKLPQILTVVRSGSARGLSLSSYILDTVATGITASVAYNVRNGFPFSTYGEMGFLLAQNAVLIVLITSYSARPTLPRLVPLVALLGSLAYALASPSLVPASTLSFLQTLTIPISLSSKVPQIVENYKAKSTGQLSAFLVINSLAGCLARVFTTMSETKDPLLLWNFALAALLNGVIFAQMIVY 241          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|1069957385|ref|XP_018289466.1| (hypothetical protein PHYBLDRAFT_75231 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026586844|gb|OAD71426.1| hypothetical protein PHYBLDRAFT_75231 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 135.576 bits (340), Expect = 4.992e-34
Identity = 78/179 (43.58%), Postives = 112/179 (62.57%), Query Frame = 0
Query:  182 KLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLY 360
            K+PQ   I R KSA GLS S Y+LET   A++LA+++R   PFST+GE  FI LQN+VI   I LYS +    ++  + L+ S+F+  T   L P  ++++L   +IPL   S+VPQ+  N++NKSTG+L+  T+I    G+ AR+FTTM +L + L L   V A + N  LV Q +LY
Sbjct:   55 KIPQIMTIVRNKSAQGLSLSSYLLETFSYAITLAYNLRQGNPFSTFGEIFFISLQNIVITLLILLYSGKREALVMTFTSLI-SIFYCLTSEKLVPASIMAVLYAATIPLSLASKVPQISANFKNKSTGQLSVFTVINYFAGSTARVFTTMTELDDPLMLTGTVLASVLNAVLVIQVFLY 232          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|544217780|ref|XP_005539034.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449019596|dbj|BAM82998.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 132.88 bits (333), Expect = 1.139e-32
Identity = 78/199 (39.20%), Postives = 123/199 (61.81%), Query Frame = 0
Query:  166 LSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSP-PILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDR 363
            L+R  GY V+AG+ L KLPQ  RI + +SAAG+S + Y++E+ G A +LA+  R  +PFSTYG+ V + +QN +IMA I  ++++  P  +L LS  + +   A       P+ ++  L ++++ ++  SR+PQ+L N R K TG L+ +T +    G  AR+FTTM Q+QN   L+  +A+   NG LVAQ  +YR +
Sbjct:   54 LARVLGYGVVAGAALVKLPQLLRILQNRSAAGISVATYLVESFGYAYNLAYHYRAGYPFSTYGDFVLLGVQNCLIMALIFYFNNQWFPLGLLTLSSYITATVVASWSQRAVPLAVLERLCSLNLAIVIGSRLPQILANARRKHTGSLSLATCLGLFGGATARVFTTMQQVQNHTILVGYLASAFLNGILVAQILMYRKQ 252          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|1022850618|ref|XP_016272679.1| (mannose-p-dolichol utilization defect 1 protein [Rhodotorula toruloides NP11] >gi|472583944|gb|EMS21560.1| mannose-p-dolichol utilization defect 1 protein [Rhodotorula toruloides NP11] >gi|647400417|emb|CDR45849.1| RHTO0S11e05600g1_1 [Rhodotorula toruloides])

HSP 1 Score: 134.035 bits (336), Expect = 1.426e-32
Identity = 73/196 (37.24%), Postives = 121/196 (61.73%), Query Frame = 0
Query:  166 LSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILA-LSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLY 360
            LS+  G  ++AG  + KLPQ   + R  SA GLS S Y+L+T+   +++A+++RN FP+ST+GE  F++ QN V++  I+ YS  P+ P LA L +L ++L +A + + L P   +S LQT++IP+   S+VPQ+L N+RN+STG+L+   +     G +AR+FTT  +  + L     + + + N  +  Q  +Y
Sbjct:   55 LSKGLGLAMVAGGAILKLPQIITVVRSGSARGLSLSSYVLDTVATGITVAYNVRNGFPYSTWGEMAFLLAQNAVLIVLITSYSARPTLPRLAPLVVLFSTLAYALSNTSLVPSSTLSFLQTLTIPISLSSKVPQILSNFRNRSTGQLSAFLVFNSLAGCLARVFTTRTETSDPLLFWGFLLSALLNAVIAIQMLVY 250          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|342319849|gb|EGU11794.1| (MPU1p [Rhodotorula toruloides ATCC 204091])

HSP 1 Score: 138.272 bits (347), Expect = 3.384e-32
Identity = 74/196 (37.76%), Postives = 121/196 (61.73%), Query Frame = 0
Query:  166 LSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILA-LSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLY 360
            LS+  G  ++AG  + KLPQ   + R+ SA GLS S Y+L+T+   +++A+++RN FP+ST+GE  F++ QN V++  I+ YS  P+ P LA L +L + L +A + + L P   +S LQT++IP+   S+VPQ+L N+RN+STG+L+   +     G +AR+FTT  +  + L     +   + NG +  Q  +Y
Sbjct:   55 LSKGLGLAMVAGGAILKLPQIITVVRRGSARGLSLSSYVLDTVATGITVAYNVRNGFPYSTWGEMAFLLAQNAVLIVLITSYSARPTLPRLAPLVVLFSKLAYALSNTSLVPSSTLSFLQTLTIPISLSSKVPQILSNFRNRSTGQLSAFLVFNSLAGCLARVFTTRTETNDPLLFWGFLLGALLNGVIAIQMLVY 250          
BLAST of EWM29377.1 vs. NCBI_GenBank
Match: gi|672818689|gb|KFH63589.1| (mannose-P-dolichol utilization defect 1 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 128.642 bits (322), Expect = 4.305e-31
Identity = 77/215 (35.81%), Postives = 119/215 (55.35%), Query Frame = 0
Query:  166 LSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISP---------------LAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRAS 365
            LS+  G+ ++ G  + K+PQ  +I R +SA GLS S Y+LET    +S+A+++R   P STYGE  F+ +QN+VI+  +  Y         AL  L A LF  + +S                L P  +++ LQ  +IP+  FSR+PQ++ NYRN STG+LA  T+     G++AR++TT+V++ + + L   V   + NG L  Q  +Y D  S
Sbjct:   39 LSKGLGFGIVLGGAIVKIPQIIKIVRARSAKGLSLSSYLLETFASVISVAYNVRQMNPISTYGEAFFVAVQNLVILGLMLHYRGRTRS---ALGTLFAFLFLGFILSRNTSEMQADGSIITTGLIPHGILAFLQATTIPISLFSRIPQIIENYRNGSTGQLAAFTVFNYCAGSLARVYTTLVEVDDVIILSGAVFNALLNGILALQMAMYWDSWS 250          
The following BLAST results are available for this feature:
BLAST of EWM29377.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111905|gb|EWM29377.1|0.000e+0100.00Cystinosin/ERS1p repeat containing protein [Nannoc... [more]
gi|553190127|ref|XP_005855133.1|6.529e-17299.21mannose-p-dolichol utilization defect 1 [Nannochlo... [more]
gi|544216519|ref|XP_005538404.1|2.480e-4444.00similar to mannose-P-dolichol utilization defect 1... [more]
gi|545709189|ref|XP_005706905.1|7.256e-4340.74lysosomal cysteine transporter, LCT family [Galdie... [more]
gi|983147061|gb|KWU45024.1|1.771e-3542.42mannose-P-dolichol utilization defect 1 protein, p... [more]
gi|1069957385|ref|XP_018289466.1|4.992e-3443.58hypothetical protein PHYBLDRAFT_75231 [Phycomyces ... [more]
gi|544217780|ref|XP_005539034.1|1.139e-3239.20hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1022850618|ref|XP_016272679.1|1.426e-3237.24mannose-p-dolichol utilization defect 1 protein [R... [more]
gi|342319849|gb|EGU11794.1|3.384e-3237.76MPU1p [Rhodotorula toruloides ATCC 204091][more]
gi|672818689|gb|KFH63589.1|4.305e-3135.81mannose-P-dolichol utilization defect 1 [Mortierel... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1317rna1317Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications