rna1314, rna1314 (mRNA) Nannochloropsis gaditana

Overview
Namerna1314
Unique Namerna1314
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1953
Alignment locationCM002457.1:308385..310007 -

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Properties
Property NameValue
Productbromodomain containing protein
Orig transcript idgnl|cribi|Naga_100028g33.3293.mrna
Orig protein idgnl|cribi|Naga_100028g33.3293
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:308385..310007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100028g33gene1268Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1314rna1314-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29357.1cds1312Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1314 ID=rna1314|Name=rna1314|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp
TGCCAGCTCTTCTGATACCCTCCGTTCCCCCGGGTCAATATACGACGCAC
CCCTGAAGTGGGCATCCCTTATCTCGAATCCGGGCATTTTCCATCAGAAA
TGATGTCGTGATTGTCGGTTTATCGCTTTCCTACTCAAGCGTCGTGCAGC
AGTCTCGTCCTCATAATTAGTCACCAGAGCAATAACCTCCTGCCTTCTAG
CTACTAAAGCAACCTTTCCTCCCTCGTCCTTCGTTTCAAGATGCCACCAT
CATGCTTGTCGGGCAGGCACTAGCGAATACAGGCACAAGACATGTCGACA
TTTGGTACTCGTGCCGTCGGAAATGCATTTTCACTGAAATGGGTGATTCG
GGGGGTCGCGGGACTTATAATTATAAACATTTTTCTCCAAACGGGCTTTT
TTCTCCCCGGACCGATCTTAAGCTCCACCGGGCGGCATGATGCTGTTTGC
ACGCCATTTGATCCGGTAGCAGCTCCGTTTTCATTGCATTTACTAGGCAG
CGCTTTTAACTTTACCCCGGCGACCCCTATGGCCACGCCCGATGCCCTCT
TCCACGGGAAAGGCATCGTTATTGCCGCATCTGGCGCAATAGCTCGACAG
GCTGCGGGCGCTTACGTCACAGCGCTTGTTTTGAGAACGGTATTGCACGA
GGACCTTCCTATCGAAATCTTTTACTCGGGGCCCGAGGAAGCCTTCCAAG
GTCCTGTCCTGAAAGCATTGGAAGCATTGCCTGATGTCCGCCTACTCGAC
TTGGAAAGTGCCTTGAGTAACCTCCATGCCCGGGGCCTTCGGACATTGGA
GCCCCTTCCTTCCCTGCAGGCACTTAGAGGGTACGCCGCCAAAGCCTACG
CCATGCAAGCTTGCTCCTTCCAAGAGGCTTTGCTCTTCGATGCGGGGGCC
ATTCCTTTTGTTCCTGCCTCCCGCTTCTTCGGATTGCCGTCCTACCACCG
ACACGGCCTCGCCGTCTTTAGTGACTACGTCAGCATCGACGCTGCCCAAT
GGCGGTATATCCTGCAGGGTATGTGCCTGGACGTCCGGCAGGTCGCCCGG
GCCCTCAACGGGAGGGAGCTCGACAGCTCCTGTGTCGTGATGGACAAGCG
TCGAAACGCCGACGCCTTGGCCGTGTCCCTGGCCTTGAATGGGCCGTGCC
AGGCACTCACGTACGCCACCTTGTGGGGCGACAAGGACACCTGGGCGTTG
GCCATGTTTTATGTGGGCAAGACGGTGTCCGTGCGTGAATGCGAGCCAGG
GTACCTGCTGAAGGCGCGCCCCTCTGGCGAGGGAGGGGGGGAGGGAGGGG
GGGAGGGAGGGGCCGAGGAAGGGGCTAGGGGGAACACGGACACCTTAAGC
TCCCCATTACAAGTCGCGCGTAAGGTCAACGGCCATGTTCAATTCTTGAA
GGATAAGTCCTCCCAAAGCCCCCCTGGTCTCGTCCCTCTGCACCACAACA
ACCAACTCCTGGATCTCCGCAACTACCACCGCCACAAAAATGGCATCTAC
ATGGACGTCTTTTCGCATTTGGGGGATGTACTAATGCCTGGCACCCGCCG
TCGGGACTGTCGGGCTTTTCCCGCACGGGACCTCCTCCCCTTGTCCCCTG
TGATGCATGAAGCATACGAAGCTGTGGCCCTGGGGTTGGAAGAAAATAAA
ATCGACCACTGTGTGTGTCGGGACGACTGGATCTCATGCGAGGCGGACAT
TGCACGTCTGCGTCATAAATATTGGGTGTTGAGGCTCATCGATTGGTGGG
CGCCTCGGGAAGCAGAGGGCGGTGTGAGGGAATAGAGAAAAAGTAGCATA
TCATGTCTTAATGACCTTCGTTTCAGCGCATGCATCAACAATGTAAGCGT
TAGAAGCCATGCTGCACAAAAGTACCCGGCAGACACTCCTTTAAATCAAA
CGAAGGGGAGTGCTTGTACTCAGGAAGCGGCACCTTCATGTATCAAACAC
GCC
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protein sequence of rna1314

>rna1314-protein ID=rna1314-protein|Name=rna1314|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLG
TIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFE
EKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQ
QCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQK
KAAAGGAAPPASTSGSVPGSAAVPTSG
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mRNA from alignment at CM002457.1:308385..310007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1314 ID=rna1314|Name=rna1314|organism=Nannochloropsis gaditana|type=mRNA|length=1623bp|location=Sequence derived from alignment at CM002457.1:308385..310007- (Nannochloropsis gaditana)
ATGATCATTCCATGCAGCAAGCGTTTTTGTTTTCTTTGTCGTAAAGCTGG
TGTGTGCATTTAATGAAAGAAAAGTGAGGGGGGGACGAAAAGAGCGTTCC
CTCTCAGCGATGATCTCCCACGTGCTAGTCAACAAGATAACATTCCCTAC
TCCTTCACTGCTCGACCATGGCAGATATACAGTTACCCAACACCGCCCAG
GCATTCGTGAGGTAGCAAATCCGTGTGGTGGTGAGTCGCGTTTGTTGGGG
GGATTAAATTGGATCTCTTCCCGCCCTGCTCTCGACGAACCAGTATTTTC
TTCCTCATGCCATACTTGATTTTCCTTCACGCATCTGTGGATTAAATAGA
ACACCATGGCTGACGGAGGTTTGAGTAAAATGTACCAATTGGTGCAGTGG
TTGTCGAATCAGAAGGACGTAGACGCGTTCTTAGAACCTGTCGACTGGAA
GACTCTGGGGCTCACCGATTATCCATTAGTGATCTCGACCCCAATGGACT
TGGGAACCATCAAAGGCCGTCTGGAGAGTGGACACTATACTAAGCACGCT
CAGGTCGCTGAGGATGTGCGCTTGGTGTGGAACAATTGCAAAACCTATAA
CCAGGAAGGTTCTTACCTGTATAAGATTGCGGATAAGCTGGCGGGCAAAT
TTGAGGAGAAGTACAGCAAGATCAAAACGGAGGAGCCTGATGGCCCCGAG
GATGAGAACCAGCCACCTTCGCTTGAAGACAAACGACAATTTCGTGAGAA
CATGTACAGGATCACTTCGGATCAATTGGGGGAGATCGTACAAACATTGG
AGCAACAGTGTCCTGAAGCAATAGCCAAGGTGGGCAACCAGGATGAGATC
GAGATCAATATCGACAAAGTCGCACCGCGGACATTTCATTTCCTGGCGAA
CCTGATCAAGAACTCACTACCCGACAAAAAGGTAGAAAGGCAACGGCATT
GTGGATAGCGAGGCCAGGGGCCATACGGGGACTCTCGATTGCCGGTGTCA
TGCGCCTCAATACCATTCTCACGCTCAGTACAATCACTGCACATATGCCA
GGCATCGGCGGCCAAGAAACAGAAGAAGGCAGCGGCAGGGGGAGCTGCAC
CCCCGGCAAGCACGAGCGGGTCCGTGCCCGGGTCCGCGGCTGTGCCAACT
TCAGGGTGAGGGGCGACATGTTGCGAAACGATTGCGGCGCAAGGTTCGAG
GAGCACGGCAGCTTGGATGGTCCACCAAATCAGAGGGGAGGTATGAACCG
AATGGGTCCTTGCAGAGGTTCTTCCGAGTTGGTCGGGGGAAGAGGATGAT
GCAAGAGGAAGAAGCGGTGTGTTCGCAGTGCGGTGCGTGCTGTTGCGTAC
AAAGGAAAGTGCACCACGCGGAGCGCTTCCGGTCCTTTGTCACTCGATAC
GTCGTGTCTCGCAGACACCGCTCGGAGAAAGGGCCGGTCACGGGGATAAT
TGAGAGAGAAATTAATGAAGCACGAAAGCAAAGGCGTGTTTGATACATGA
AGGTGCCGCTTCCTGAGTACAAGCACTCCCCTTCGTTTGATTTAAAGGAG
TGTCTGCCGGGTACTTTTGTGCAGCATGGCTTCTAACGCTTACATTGTTG
ATGCATGCGCTGAAACGAAGGTC
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Coding sequence (CDS) from alignment at CM002457.1:308385..310007-

>rna1314 ID=rna1314|Name=rna1314|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at CM002457.1:308385..310007- (Nannochloropsis gaditana)
GCATCGGCGGCCAAGAAACAGAAGAAGGCAGCGGCAGGGGGAGCTGCACC
CCCGGCAAGCACGAGCGGGTCCGTGCCCGGGTCCGCGGCTGTGCCAACTT
CAGGGTGAATGGCTGACGGAGGTTTGAGTAAAATGTACCAATTGGTGCAG
TGGTTGTCGAATCAGAAGGACGTAGACGCGTTCTTAGAACCTGTCGACTG
GAAGACTCTGGGGCTCACCGATTATCCATTAGTGATCTCGACCCCAATGG
ACTTGGGAACCATCAAAGGCCGTCTGGAGAGTGGACACTATACTAAGCAC
GCTCAGGTCGCTGAGGATGTGCGCTTGGTGTGGAACAATTGCAAAACCTA
TAACCAGGAAGGTTCTTACCTGTATAAGATTGCGGATAAGCTGGCGGGCA
AATTTGAGGAGAAGTACAGCAAGATCAAAACGGAGGAGCCTGATGGCCCC
GAGGATGAGAACCAGCCACCTTCGCTTGAAGACAAACGACAATTTCGTGA
GAACATGTACAGGATCACTTCGGATCAATTGGGGGAGATCGTACAAACAT
TGGAGCAACAGTGTCCTGAAGCAATAGCCAAGGTGGGCAACCAGGATGAG
ATCGAGATCAATATCGACAAAGTCGCACCGCGGACATTTCATTTCCTGGC
GAACCTGATCAAGAACTCACTACCCGACAAAAAGGCATCGGCGGCCAAGA
AACAGAAGAAGGCAGCGGCAGGGGGAGCTGCACCCCCGGCAAGCACGAGC
GGGTCCGTGCCCGGGTCCGCGGCTGTGCCAACTTCAGGGTGAATGGCTGA
CGGAGGTTTGAGTAAAATGTACCAATTGGTGCAGTGGTTGTCGAATCAGA
AGGACGTAGACGCGTTCTTAGAACCTGTCGACTGGAAGACTCTGGGGCTC
ACCGATTATCCATTAGTGATCTCGACCCCAATGGACTTGGGAACCATCAA
AGGCCGTCTGGAGAGTGGACACTATACTAAGCACGCTCAGGTCGCTGAGG
ATGTGCGCTTGGTGTGGAACAATTGCAAAACCTATAACCAGGAAGGTTCT
TACCTGTATAAGATTGCGGATAAGCTGGCGGGCAAATTTGAGGAGAAGTA
CAGCAAGATCAAAACGGAGGAGCCTGATGGCCCCGAGGATGAGAACCAGC
CACCTTCGCTTGAAGACAAACGACAATTTCGTGAGAACATGTACAGGATC
ACTTCGGATCAATTGGGGGAGATCGTACAAACATTGGAGCAACAGTGTCC
TGAAGCAATAGCCAAGGTGGGCAACCAGGATGAGATCGAGATCAATATCG
ACAAAGTCGCACCGCGGACATTTCATTTCCTGGCGAACCTGATCAAGAAC
TCACTACCCGACAAAAAG
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Synonyms
Publications