EWM29357.1, cds1312 (CDS) Nannochloropsis gaditana

Overview
NameEWM29357.1
Unique Namecds1312
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:309077..309652 -
Alignment locationCM002457.1:308849..308956 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29357.1
Productbromodomain containing protein
Orig transcript idgnl|cribi|Naga_100028g33.3293.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:309077..309652 -
CM002457.1supercontigCM002457.1:308849..308956 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR027353NET_dom
IPR001487Bromodomain
Homology
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|553185321|ref|XP_005854234.1| (bromodomain containing protein [Nannochloropsis gaditana CCMP526] >gi|422294825|gb|EKU22125.1| bromodomain containing protein [Nannochloropsis gaditana CCMP526] >gi|585111885|gb|EWM29357.1| bromodomain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 471.47 bits (1212), Expect = 2.870e-168
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
Query:    1 MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQKKAAAGGAAPPASTSGSVPGSAAVPTSG 227
            MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQKKAAAGGAAPPASTSGSVPGSAAVPTSG
Sbjct:    1 MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQKKAAAGGAAPPASTSGSVPGSAAVPTSG 227          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|223993693|ref|XP_002286530.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977845|gb|EED96171.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 160.614 bits (405), Expect = 8.265e-46
Identity = 77/185 (41.62%), Postives = 116/185 (62.70%), Query Frame = 0
Query:    9 MYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTE--EPDGP------EDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIK 185
            M +LV     + D + F EPVD+K LGL DYPLV+  PMDLG +K +L    Y      A+DVRL+W NC TYN +GS  Y +A  +A KFEEK++K+  +  E  G       ED+ + P+ EDKR F + +Y+IT ++LG ++  L+ +CP+A+ K   +DE+EIN+D ++P+ F  L + ++
Sbjct:    8 MSKLVSQFYAKADAEPFREPVDYKALGLVDYPLVVKKPMDLGQVKKKLNESKYKSIHDAADDVRLIWKNCMTYNADGSDFYLLAQTMAKKFEEKFAKLVEQFGEAAGDGGDKNGEDDYEDPTPEDKRTFAKLLYKITKEELGNVITDLDAKCPKALVKNSAEDEVEINVDVISPKIFDELLSYVR 192          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|298708786|emb|CBJ30746.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.606 bits (392), Expect = 2.742e-43
Identity = 74/193 (38.34%), Postives = 123/193 (63.73%), Query Frame = 0
Query:    4 GGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPD---GPEDENQP-----PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSL 188
             GL ++ ++V    N+ +  AF EPV+ K +G+ DYP ++  PMDLGT++ +LE G Y +   VA DVRL+W+NC  YN  GS    +A  LA KFEE++S++KT E +    P  +++P     P+L++K +F  ++YR T   +G++++ ++ +CP+A+ K    DE+E+N+D + P TF F+  L++ SL
Sbjct:    7 NGLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSRVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTFRFVERLLRQSL 198          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|1210515820|dbj|GAX25343.1| (hypothetical protein FisN_5Lh436 [Fistulifera solaris])

HSP 1 Score: 152.525 bits (384), Expect = 1.492e-42
Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 0
Query:    7 SKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLES-GHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYS------KIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKN 186
            ++  +LV    N+ + + F  PVDWK  GLTDYP +I  PMDLGTIK RL+   HY    QV EDVRLVW NC TYN +GS  Y +A  L  K++++Y+      ++    P   ED     SL+D+R F +++++I+ + LG ++  LEQ+CP+A+ +   +DE+EIN+D +  +    L  LI N
Sbjct:   10 NRTMKLVDSFYNRPEAEPFRVPVDWKAYGLTDYPHIIKHPMDLGTIKTRLKKKDHYQTLYQVNEDVRLVWRNCMTYNADGSDFYTLAKDLQEKWDKQYTALLKDCRMAAPAPPSKEDTTGKLSLQDRRNFAKSLFQISKEDLGRVLVELEQKCPQALKRNATEDEVEINVDNITAKVVEELNPLINN 196          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|1210524322|dbj|GAX17051.1| (hypothetical protein FisN_5Hh436 [Fistulifera solaris])

HSP 1 Score: 152.14 bits (383), Expect = 1.680e-42
Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 0
Query:    7 SKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLES-GHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYS------KIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKN 186
            ++  +LV    N+ + + F  PVDWK  GLTDYP +I  PMDLGTIK RL+   HY    QV EDVRLVW NC TYN +GS  Y +A  L  K++++Y+      ++    P   ED     SL+D+R F +++++I+ + LG ++  LEQ+CP+A+ +   +DE+EIN+D +  +    L  LI N
Sbjct:   10 NRTMKLVDSFYNRPEAEPFRVPVDWKAYGLTDYPHIIKHPMDLGTIKTRLKKKDHYQTLYQVNEDVRLVWRNCMTYNADGSDFYTLAKDLQEKWDKQYTALLKDCRVAAPAPPSKEDTAGKLSLQDRRNFAKSLFQISKEDLGRVLVELEQKCPQALKRNATEDEVEINVDNITAKVVEDLNPLINN 196          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|397641904|gb|EJK74909.1| (hypothetical protein THAOC_03385, partial [Thalassiosira oceanica])

HSP 1 Score: 151.369 bits (381), Expect = 1.626e-41
Identity = 71/168 (42.26%), Postives = 104/168 (61.90%), Query Frame = 0
Query:   25 FLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSK------IKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKN 186
            F E VDWKTLGL DYP +I  PMDLGT+K ++  G Y    +  +DVR +W NC TYN +GS  Y +A+ +A KFE+K+ K      + T +  G  DE   P++E+KR F +++Y+I  D LG++V  LE +CP A+ K   +DE+EIN+D++    F  L   + +
Sbjct:   93 FREAVDWKTLGLFDYPQIIKHPMDLGTVKRKINEGKYKSLHEAGDDVRQIWKNCMTYNADGSDFYNLAESMAKKFEDKFQKLLAQNDVATSQEGGVLDE---PTIEEKRAFAKSLYKIEKDDLGKVVLDLENKCPAALLKNSAEDEVEINVDEITAAVFKELVEFVNS 257          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|1173960886|gb|OQS06969.1| (hypothetical protein THRCLA_01005 [Thraustotheca clavata])

HSP 1 Score: 147.517 bits (371), Expect = 1.101e-40
Identity = 71/167 (42.51%), Postives = 110/167 (65.87%), Query Frame = 0
Query:   25 FLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGP--EDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLP 189
            F E V+W+  GL DY  V+  PMD+GT++ +L  G Y K    A+D+RL+W+NCK YNQ+GS LY IA  L+  F+EK   +K +  DGP  +  ++ PSLED+  F +++Y+I+S  LG +V+ L+++CP+A+ K  N DE+++NID +  +TF  L   +K  +P
Sbjct:   25 FRERVNWEEWGLYDYLQVVKVPMDMGTVRVKLNKGEYKKPEDFAKDMRLIWDNCKLYNQDGSDLYAIAHSLSKLFDEKMKHLKLD--DGPPTKSSSRDPSLEDRIVFSQDIYKISSKDLGTVVEMLDERCPKALDK-QNSDELDLNIDAIDAKTFKELDTFVKECIP 188          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|953491803|emb|CEG45812.1| (Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Plasmopara halstedii])

HSP 1 Score: 146.747 bits (369), Expect = 3.770e-40
Identity = 77/171 (45.03%), Postives = 112/171 (65.50%), Query Frame = 0
Query:   22 VDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPE-DENQP-PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPD 190
             + F E V+W+  GL DY  V+  PMDLGTI+ +L    Y K A+ A D+RLVW+NCK YNQ+GS LY +AD+LA KFE++   +K +    P+ D++ P PSLEDK  F +N+Y+I    LG IV+ LE+QCP+A+ K  + DE++I ID +  +TF  L  ++   +P+
Sbjct:   35 CEPFRERVNWEEWGLYDYLQVVKEPMDLGTIRSKLAKNEYKKPAEFARDMRLVWSNCKLYNQDGSDLYLLADELAKKFEDRVKAMKLDVGPVPKADKSIPAPSLEDKICFSQNIYKINPKDLGVIVKLLEEQCPKALDK-SSPDELDIVIDNIDNKTFRDLEKIVLEKVPE 204          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|695376942|ref|XP_009515896.1| (hypothetical protein PHYSODRAFT_537316 [Phytophthora sojae] >gi|348688807|gb|EGZ28621.1| hypothetical protein PHYSODRAFT_537316 [Phytophthora sojae])

HSP 1 Score: 145.976 bits (367), Expect = 5.009e-40
Identity = 76/185 (41.08%), Postives = 116/185 (62.70%), Query Frame = 0
Query:    8 KMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPE-DENQP-PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPD 190
            K   +V+     +  + F E V+W+  GL DY  V+  PMDLGTI+ +L    Y K A+ A D+RLVW+NCK YNQ+GS LY +AD+LA KFE++   +K +    P+ D++ P PSLE+K  F +N+Y++    LG IV+ LE+QCP+A+ K  + DE++I +D +  +TF  L   +   +P+
Sbjct:    8 KCTDVVEHFFKLESCEPFRERVNWEEWGLYDYLQVVKEPMDLGTIRSKLGKNEYKKPAEFARDMRLVWDNCKLYNQDGSDLYLLADELAKKFEDRVKAMKLDVGPVPKADKSIPAPSLEEKIYFSQNIYKVAPKDLGSIVELLEEQCPKALDK-SSPDEVDIVVDNIDNKTFRDLEKFVMEKVPE 191          
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|675197457|ref|XP_008907613.1| (hypothetical protein PPTG_13590 [Phytophthora parasitica INRA-310] >gi|675197459|ref|XP_008907614.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566020600|gb|ETI43511.1| hypothetical protein F443_11533 [Phytophthora parasitica P1569] >gi|566020601|gb|ETI43512.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567958057|gb|ETK83651.1| hypothetical protein L915_11226 [Phytophthora parasitica] >gi|567958058|gb|ETK83652.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567986751|gb|ETL37068.1| hypothetical protein L916_11123 [Phytophthora parasitica] >gi|567986752|gb|ETL37069.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568016035|gb|ETL90212.1| hypothetical protein L917_11027 [Phytophthora parasitica] >gi|568016036|gb|ETL90213.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568046424|gb|ETM43533.1| hypothetical protein L914_11056 [Phytophthora parasitica] >gi|568046425|gb|ETM43534.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568092428|gb|ETN07237.1| hypothetical protein PPTG_13590 [Phytophthora parasitica INRA-310] >gi|568092429|gb|ETN07238.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570324301|gb|ETO72249.1| hypothetical protein F444_11604 [Phytophthora parasitica P1976] >gi|570324302|gb|ETO72250.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570948145|gb|ETP13402.1| hypothetical protein F441_11453 [Phytophthora parasitica CJ01A1] >gi|570948146|gb|ETP13403.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570980934|gb|ETP41468.1| hypothetical protein F442_11427 [Phytophthora parasitica P10297] >gi|570980935|gb|ETP41469.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970616453|gb|KUF64622.1| Transcription factor GTE5 [Phytophthora nicotianae])

HSP 1 Score: 145.591 bits (366), Expect = 5.953e-40
Identity = 77/185 (41.62%), Postives = 115/185 (62.16%), Query Frame = 0
Query:    8 KMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPE-DENQP-PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPD 190
            K   +V+        + F E V+W+  GL DY  V+  PMDLGTI+ +L    Y K A+ A D+RLVW+NCK YNQ+GS LY +AD+LA KFE++   +K +    P+ D++ P PSLE+K  F +N+Y++    LG IVQ LE+QCP+A+ K  + DE++I +D +  +TF  L   +   +P+
Sbjct:    8 KCTDVVEHFFKLDSCEPFRERVNWEEWGLYDYLQVVKEPMDLGTIRSKLSKNEYKKPAEFARDMRLVWSNCKLYNQDGSDLYLLADELAKKFEDRVKTMKLDVGPVPKADKSIPAPSLEEKIYFSQNIYKVNPKDLGAIVQLLEEQCPKALDK-SSPDELDIVVDHIDNKTFRDLEKFVLEKVPE 191          
The following BLAST results are available for this feature:
BLAST of EWM29357.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553185321|ref|XP_005854234.1|2.870e-168100.00bromodomain containing protein [Nannochloropsis ga... [more]
gi|223993693|ref|XP_002286530.1|8.265e-4641.62predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298708786|emb|CBJ30746.1|2.742e-4338.34conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210515820|dbj|GAX25343.1|1.492e-4240.64hypothetical protein FisN_5Lh436 [Fistulifera sola... [more]
gi|1210524322|dbj|GAX17051.1|1.680e-4240.64hypothetical protein FisN_5Hh436 [Fistulifera sola... [more]
gi|397641904|gb|EJK74909.1|1.626e-4142.26hypothetical protein THAOC_03385, partial [Thalass... [more]
gi|1173960886|gb|OQS06969.1|1.101e-4042.51hypothetical protein THRCLA_01005 [Thraustotheca c... [more]
gi|953491803|emb|CEG45812.1|3.770e-4045.03Transcription initiation factor TFIID, subunit BDF... [more]
gi|695376942|ref|XP_009515896.1|5.009e-4041.08hypothetical protein PHYSODRAFT_537316 [Phytophtho... [more]
gi|675197457|ref|XP_008907613.1|5.953e-4041.62hypothetical protein PPTG_13590 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1314rna1314Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications