EWM29357.1, cds1312 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|553185321|ref|XP_005854234.1| (bromodomain containing protein [Nannochloropsis gaditana CCMP526] >gi|422294825|gb|EKU22125.1| bromodomain containing protein [Nannochloropsis gaditana CCMP526] >gi|585111885|gb|EWM29357.1| bromodomain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 471.47 bits (1212), Expect = 2.870e-168 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 Query: 1 MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQKKAAAGGAAPPASTSGSVPGSAAVPTSG 227 MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQKKAAAGGAAPPASTSGSVPGSAAVPTSG Sbjct: 1 MADGGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPDKKASAAKKQKKAAAGGAAPPASTSGSVPGSAAVPTSG 227
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|223993693|ref|XP_002286530.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977845|gb|EED96171.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 160.614 bits (405), Expect = 8.265e-46 Identity = 77/185 (41.62%), Postives = 116/185 (62.70%), Query Frame = 0 Query: 9 MYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTE--EPDGP------EDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIK 185 M +LV + D + F EPVD+K LGL DYPLV+ PMDLG +K +L Y A+DVRL+W NC TYN +GS Y +A +A KFEEK++K+ + E G ED+ + P+ EDKR F + +Y+IT ++LG ++ L+ +CP+A+ K +DE+EIN+D ++P+ F L + ++ Sbjct: 8 MSKLVSQFYAKADAEPFREPVDYKALGLVDYPLVVKKPMDLGQVKKKLNESKYKSIHDAADDVRLIWKNCMTYNADGSDFYLLAQTMAKKFEEKFAKLVEQFGEAAGDGGDKNGEDDYEDPTPEDKRTFAKLLYKITKEELGNVITDLDAKCPKALVKNSAEDEVEINVDVISPKIFDELLSYVR 192
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|298708786|emb|CBJ30746.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 155.606 bits (392), Expect = 2.742e-43 Identity = 74/193 (38.34%), Postives = 123/193 (63.73%), Query Frame = 0 Query: 4 GGLSKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPD---GPEDENQP-----PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSL 188 GL ++ ++V N+ + AF EPV+ K +G+ DYP ++ PMDLGT++ +LE G Y + VA DVRL+W+NC YN GS +A LA KFEE++S++KT E + P +++P P+L++K +F ++YR T +G++++ ++ +CP+A+ K DE+E+N+D + P TF F+ L++ SL Sbjct: 7 NGLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSRVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTFRFVERLLRQSL 198
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|1210515820|dbj|GAX25343.1| (hypothetical protein FisN_5Lh436 [Fistulifera solaris]) HSP 1 Score: 152.525 bits (384), Expect = 1.492e-42 Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 0 Query: 7 SKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLES-GHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYS------KIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKN 186 ++ +LV N+ + + F PVDWK GLTDYP +I PMDLGTIK RL+ HY QV EDVRLVW NC TYN +GS Y +A L K++++Y+ ++ P ED SL+D+R F +++++I+ + LG ++ LEQ+CP+A+ + +DE+EIN+D + + L LI N Sbjct: 10 NRTMKLVDSFYNRPEAEPFRVPVDWKAYGLTDYPHIIKHPMDLGTIKTRLKKKDHYQTLYQVNEDVRLVWRNCMTYNADGSDFYTLAKDLQEKWDKQYTALLKDCRMAAPAPPSKEDTTGKLSLQDRRNFAKSLFQISKEDLGRVLVELEQKCPQALKRNATEDEVEINVDNITAKVVEELNPLINN 196
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|1210524322|dbj|GAX17051.1| (hypothetical protein FisN_5Hh436 [Fistulifera solaris]) HSP 1 Score: 152.14 bits (383), Expect = 1.680e-42 Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 0 Query: 7 SKMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLES-GHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYS------KIKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKN 186 ++ +LV N+ + + F PVDWK GLTDYP +I PMDLGTIK RL+ HY QV EDVRLVW NC TYN +GS Y +A L K++++Y+ ++ P ED SL+D+R F +++++I+ + LG ++ LEQ+CP+A+ + +DE+EIN+D + + L LI N Sbjct: 10 NRTMKLVDSFYNRPEAEPFRVPVDWKAYGLTDYPHIIKHPMDLGTIKTRLKKKDHYQTLYQVNEDVRLVWRNCMTYNADGSDFYTLAKDLQEKWDKQYTALLKDCRVAAPAPPSKEDTAGKLSLQDRRNFAKSLFQISKEDLGRVLVELEQKCPQALKRNATEDEVEINVDNITAKVVEDLNPLINN 196
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|397641904|gb|EJK74909.1| (hypothetical protein THAOC_03385, partial [Thalassiosira oceanica]) HSP 1 Score: 151.369 bits (381), Expect = 1.626e-41 Identity = 71/168 (42.26%), Postives = 104/168 (61.90%), Query Frame = 0 Query: 25 FLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSK------IKTEEPDGPEDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKN 186 F E VDWKTLGL DYP +I PMDLGT+K ++ G Y + +DVR +W NC TYN +GS Y +A+ +A KFE+K+ K + T + G DE P++E+KR F +++Y+I D LG++V LE +CP A+ K +DE+EIN+D++ F L + + Sbjct: 93 FREAVDWKTLGLFDYPQIIKHPMDLGTVKRKINEGKYKSLHEAGDDVRQIWKNCMTYNADGSDFYNLAESMAKKFEDKFQKLLAQNDVATSQEGGVLDE---PTIEEKRAFAKSLYKIEKDDLGKVVLDLENKCPAALLKNSAEDEVEINVDEITAAVFKELVEFVNS 257
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|1173960886|gb|OQS06969.1| (hypothetical protein THRCLA_01005 [Thraustotheca clavata]) HSP 1 Score: 147.517 bits (371), Expect = 1.101e-40 Identity = 71/167 (42.51%), Postives = 110/167 (65.87%), Query Frame = 0 Query: 25 FLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGP--EDENQPPSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLP 189 F E V+W+ GL DY V+ PMD+GT++ +L G Y K A+D+RL+W+NCK YNQ+GS LY IA L+ F+EK +K + DGP + ++ PSLED+ F +++Y+I+S LG +V+ L+++CP+A+ K N DE+++NID + +TF L +K +P Sbjct: 25 FRERVNWEEWGLYDYLQVVKVPMDMGTVRVKLNKGEYKKPEDFAKDMRLIWDNCKLYNQDGSDLYAIAHSLSKLFDEKMKHLKLD--DGPPTKSSSRDPSLEDRIVFSQDIYKISSKDLGTVVEMLDERCPKALDK-QNSDELDLNIDAIDAKTFKELDTFVKECIP 188
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|953491803|emb|CEG45812.1| (Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Plasmopara halstedii]) HSP 1 Score: 146.747 bits (369), Expect = 3.770e-40 Identity = 77/171 (45.03%), Postives = 112/171 (65.50%), Query Frame = 0 Query: 22 VDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPE-DENQP-PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPD 190 + F E V+W+ GL DY V+ PMDLGTI+ +L Y K A+ A D+RLVW+NCK YNQ+GS LY +AD+LA KFE++ +K + P+ D++ P PSLEDK F +N+Y+I LG IV+ LE+QCP+A+ K + DE++I ID + +TF L ++ +P+ Sbjct: 35 CEPFRERVNWEEWGLYDYLQVVKEPMDLGTIRSKLAKNEYKKPAEFARDMRLVWSNCKLYNQDGSDLYLLADELAKKFEDRVKAMKLDVGPVPKADKSIPAPSLEDKICFSQNIYKINPKDLGVIVKLLEEQCPKALDK-SSPDELDIVIDNIDNKTFRDLEKIVLEKVPE 204
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|695376942|ref|XP_009515896.1| (hypothetical protein PHYSODRAFT_537316 [Phytophthora sojae] >gi|348688807|gb|EGZ28621.1| hypothetical protein PHYSODRAFT_537316 [Phytophthora sojae]) HSP 1 Score: 145.976 bits (367), Expect = 5.009e-40 Identity = 76/185 (41.08%), Postives = 116/185 (62.70%), Query Frame = 0 Query: 8 KMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPE-DENQP-PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPD 190 K +V+ + + F E V+W+ GL DY V+ PMDLGTI+ +L Y K A+ A D+RLVW+NCK YNQ+GS LY +AD+LA KFE++ +K + P+ D++ P PSLE+K F +N+Y++ LG IV+ LE+QCP+A+ K + DE++I +D + +TF L + +P+ Sbjct: 8 KCTDVVEHFFKLESCEPFRERVNWEEWGLYDYLQVVKEPMDLGTIRSKLGKNEYKKPAEFARDMRLVWDNCKLYNQDGSDLYLLADELAKKFEDRVKAMKLDVGPVPKADKSIPAPSLEEKIYFSQNIYKVAPKDLGSIVELLEEQCPKALDK-SSPDEVDIVVDNIDNKTFRDLEKFVMEKVPE 191
BLAST of EWM29357.1 vs. NCBI_GenBank
Match: gi|675197457|ref|XP_008907613.1| (hypothetical protein PPTG_13590 [Phytophthora parasitica INRA-310] >gi|675197459|ref|XP_008907614.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566020600|gb|ETI43511.1| hypothetical protein F443_11533 [Phytophthora parasitica P1569] >gi|566020601|gb|ETI43512.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567958057|gb|ETK83651.1| hypothetical protein L915_11226 [Phytophthora parasitica] >gi|567958058|gb|ETK83652.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567986751|gb|ETL37068.1| hypothetical protein L916_11123 [Phytophthora parasitica] >gi|567986752|gb|ETL37069.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568016035|gb|ETL90212.1| hypothetical protein L917_11027 [Phytophthora parasitica] >gi|568016036|gb|ETL90213.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568046424|gb|ETM43533.1| hypothetical protein L914_11056 [Phytophthora parasitica] >gi|568046425|gb|ETM43534.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568092428|gb|ETN07237.1| hypothetical protein PPTG_13590 [Phytophthora parasitica INRA-310] >gi|568092429|gb|ETN07238.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570324301|gb|ETO72249.1| hypothetical protein F444_11604 [Phytophthora parasitica P1976] >gi|570324302|gb|ETO72250.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570948145|gb|ETP13402.1| hypothetical protein F441_11453 [Phytophthora parasitica CJ01A1] >gi|570948146|gb|ETP13403.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570980934|gb|ETP41468.1| hypothetical protein F442_11427 [Phytophthora parasitica P10297] >gi|570980935|gb|ETP41469.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970616453|gb|KUF64622.1| Transcription factor GTE5 [Phytophthora nicotianae]) HSP 1 Score: 145.591 bits (366), Expect = 5.953e-40 Identity = 77/185 (41.62%), Postives = 115/185 (62.16%), Query Frame = 0 Query: 8 KMYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEGSYLYKIADKLAGKFEEKYSKIKTEEPDGPE-DENQP-PSLEDKRQFRENMYRITSDQLGEIVQTLEQQCPEAIAKVGNQDEIEINIDKVAPRTFHFLANLIKNSLPD 190 K +V+ + F E V+W+ GL DY V+ PMDLGTI+ +L Y K A+ A D+RLVW+NCK YNQ+GS LY +AD+LA KFE++ +K + P+ D++ P PSLE+K F +N+Y++ LG IVQ LE+QCP+A+ K + DE++I +D + +TF L + +P+ Sbjct: 8 KCTDVVEHFFKLDSCEPFRERVNWEEWGLYDYLQVVKEPMDLGTIRSKLSKNEYKKPAEFARDMRLVWSNCKLYNQDGSDLYLLADELAKKFEDRVKTMKLDVGPVPKADKSIPAPSLEEKIYFSQNIYKVNPKDLGAIVQLLEEQCPKALDK-SSPDELDIVVDHIDNKTFRDLEKFVLEKVPE 191 The following BLAST results are available for this feature:
BLAST of EWM29357.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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