|
|
Properties
| Property Name | Value |
|---|
| Product | Alpha-mannosyltransferase |
| Orig transcript id | gnl|cribi|Naga_100028g32.3317.mrna |
| Orig protein id | gnl|cribi|Naga_100028g32.3317 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:306573..308525 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1313 ID=rna1313|Name=rna1313|organism=Nannochloropsis gaditana|type=mRNA|length=1995bp
CGTCGTATATTGACCCGGGGGAACGGAGGGTATCAGAAGAGCTGGCACGT
CTTGCTTTCAGAGATCGCTCAACGGGCATGGTATCCGCACGTCCCATCGT
GACCTTACTTTGCATTAGTTCCCGTTGATTCGCGTCAGGACTTGCAGGAC
ATATGCACTCAATATAGACCTGGTAGGTTAAGTATACGTGTGGATATTTT
TAAAAGTTACATAACTGTCCAACAACCGAACATCAGCAGGTCGTGGGCTT
CCACCCTCACGCAATGCGCCACCGGGAGGAAACCTTTTCGATACTGTCCG
CTAAGTTGTCTTCATGTCCATTGGGAAATATGCTGGCTTCGTAAGGTAGA
AACTTCGACGTTGATACGGCGGGGTATGGACGAGGAGGCGCCTTTGCGCT
TTTACGGCTGTGGCATCAACTCATTTTTCCAGTTGGGGCCGCTGGTGAGT
GAGTGCCCATCCCAGAGCGCTGGCGCGGCCGCACAAGCAAGCGATGACGG
TAGTGGCGCAATCATACAAGGGCAAAACATCCACTTCTCGTCTCAAGAGA
AAAAAAGTGTCCTGCACCTGCCTCAGCCCCTAGCCCTGGAGCGTTACGTG
GCCGAGGAGGACGGGCTCGTGCAAGACATCGCATGCGGGGCAACATTTAC
AATTGCCTTAACGTCGAGAGGAGTGCCTTACCAGTGGGGAACAGTAAATG
GACGGGCCTATCCCGAGCCCTCGCGGGTCTCATTAGGCGTGCCGCTGAGA
TGTCTGCAAGTGAGCTGCGGGCGGAAGCATGCGCTGGCGCTGATGGAGGG
GGGATTCGTGACGAGTTGGGGCGTGGGGTACTTTGGGCAGCTCGGGCAAG
GGGACAATCTGTCCAGCGACAGGCCTCGGCTCATCCACCATCTGGACCCC
CCCCGACTGGGAGGAGACCGCGTGGTGGCGGTGGCCTGCGGGGGCCAGCA
CTCGGCAGTGCACACGGCCGGGCAGTCCGTCTTCTGCTTCGGCTTCAATC
GCTACGGCCAGGTGGGACAAGGCCAGGCGTGCAACAAGATCTCCACCCCG
CGGCCCGTAAATATGAGTGGGATAGGCTCCTCCCAGATCCGTCAACTCGT
GTGCGGGCGCCATCACACCTCGGTCCTGACGGATAAGGGCCAGGTCTTCA
GCTGGGGCGCGTCCTCTTTTGGCCGTTTGGGTCTGCCCGACCCCAAGAAA
ATCGTGGGCCTACCCACGGAGGTCCCCGCCTTCCGGTGCTGCCCGCTGGC
GGCCCTGGCCTGCGGGGATTTCCACGTGCTCGGCTTGGGCGTGGACGGGC
GGGCCTACGCCTGGGGGTACGGCTCGGAGGGACAAGGGGGCCTAGGGGCG
ACCTTGCATTTGCGGACCCCGCGTCCCGTGGAAGGCTTGGAGGGGAGCCG
GATCGCTCAGATTGCCTGTGGCGCCTGGTGGTCGATGGTGGTCACGGAAG
CAGGTCGCCTTTACACGTGGGGCTATGGCGACGGCGGCTGGCTCGGGCTC
GAGCGTGCTTCCAAGCTCCCATACGTGGAGCCGTGTCCCCCAGTCACCAA
GTATGGGGCCACCTGCTCCTTTGACAGCGATTTCAACGCCTGTCTGCCGG
CCGTGGTTTCAACGTTGTCGCACCTTCGCGTCGAAAAAGTGGTGGCGGGG
GGGGGGCACACCATCATCATGGCCAGGAGAATCCAGAGAAGGTTTTCACG
GGCAGAAAGAAAGGTTGTGCAAGGATTTGATGGACATGAAATGCGGCGGG
GGGGACGCGAAGGGATTCGTCGGAAACAGGAGAGATGGGGATGCTGGGTA
TGGAAGGGTCTGTGCCTCATACCAGCCGGCATGCAAACAGAGCCTCGAGC
GTTGAAAATGCTAACGAGAGCACCTCTTCTTCCTCCACGTCCTCCTCTTC
TTTTTCTTCCTCCTCACACGCTCCGGCGTCTGTCATGCCCAGCACCTGAC
TTACAAAGACGCGGAGCCGTAAAAGCGGTCATGTACAGAGCATAA back to topprotein sequence of rna1313 >rna1313-protein ID=rna1313-protein|Name=rna1313|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MSTFGTRAVGNAFSLKWVIRGVAGLIIINIFLQTGFFLPGPILSSTGRHD
AVCTPFDPVAAPFSLHLLGSAFNFTPATPMATPDALFHGKGIVIAASGAI
ARQAAGAYVTALVLRTVLHEDLPIEIFYSGPEEAFQGPVLKALEALPDVR
LLDLESALSNLHARGLRTLEPLPSLQALRGYAAKAYAMQACSFQEALLFD
AGAIPFVPASRFFGLPSYHRHGLAVFSDYVSIDAAQWRYILQGMCLDVRQ
VARALNGRELDSSCVVMDKRRNADALAVSLALNGPCQALTYATLWGDKDT
WALAMFYVGKTVSVRECEPGYLLKARPSGEGGGEGGGEGGAEEGARGNTD
TLSSPLQVARKVNGHVQFLKDKSSQSPPGLVPLHHNNQLLDLRNYHRHKN
GIYMDVFSHLGDVLMPGTRRRDCRAFPARDLLPLSPVMHEAYEAVALGLE
ENKIDHCVCRDDWISCEADIARLRHKYWVLRLIDWWAPREAEGGVRE back to topmRNA from alignment at CM002457.1:306573..308525+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1313 ID=rna1313|Name=rna1313|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp|location=Sequence derived from alignment at CM002457.1:306573..308525+ (Nannochloropsis gaditana)
TGCCAGCTCTTCTGATACCCTCCGTTCCCCCGGGTCAATATACGACGCAC
CCCTGAAGTGGGCATCCCTTATCTCGAATCCGGGCATTTTCCATCAGAAA
TGATGTCGTGATTGTCGGTTTATCGCTTTCCTACTCAAGCGTCGTGCAGC
AGTCTCGTCCTCATAATTAGTCACCAGAGcaataacctcctgccttctaG
CTACTAAAGcaacctttcctccctcgtccttcgTTTCAAGATGCCACCAT
CATGCTTGTCGGGCAGGCACTAGCGAATACAGGCACAAGACATGTCGACA
TTTGGTACTCGTGCCGTCGGAAATGCATTTTCACTGAAATGGGTGATTCG
GGGGGTCGCGGGACTTATAATTATAAACATTTTTCTCCAAACGGGCTTTT
TTCTCCCCGGACCGATCTTAAGCTCCACCGGGCGGCATGATGCTGTTTGC
ACGCCATTTGATCCGGTAGCAGCTCCGTTTTCATTGCATTTACTAGGCAG
CGCTTTTAACTTTACCCCGGCGACCCCTATGGCCACGCCCGATGCCCTCT
TCCACGGGAAAGGCATCGTTATTGCCGCATCTGGCGCAATAGCTCGACAG
GCTGCGGGCGCTTACGTCACAGCGCTTGTTTTGAGAACGGTATTGCACGA
GGACCTTCCTATCGAAATCTTTTACTCGGGGCCCGAGGAAGCCTTCCAAG
GTCCTGTCCTGAAAGCATTGGAAGCATTGCCTGATGTCCGCCTACTCGAC
TTGGAAAGTGCCTTGAGTAACCTCCATGCCCGGGGCCTTCGGACATTGga
gccccttccttccctgcagGCACTTAGAGGGTACGCCGCCAAAGCCTACG
CCATGCAAGCTTGCTCCTTCCAAGAGGCTTTGCTCTTCGATGCGGGGGCC
ATTCCTTTtgttcctgcctcccgcttcttcggATTGCCGTCCTACCACCG
ACACGGCCTCGCCGTCTTTAGTGACTACGTCAGCATCGACGCTGCCCAAT
GGCGGTATATCCTGCAGGGTATGTGCCTGGACGTCCGGCAGGTCGCCCGG
GCCCTCAACGGGAGGGAGCTCGACAGCTCCTGTGTCGTGATGGACAAGCG
TCGAAACGCCGACGCCTTGGCCGTGTCCCTGGCCTTGAATGGGCCGTGCC
AGGCACTCACGTACGCCACCTTGTGGGGCGACAAGGACACCTGGGCGTTG
GCCATGTTTTATGTGGGCAAGACGGTGTCCGTGCGTGAATGCGAGCCAGG
GTACCTGCTGAAGGCGCGCCCCtctggcgagggagggggggagggagggg
gggagggaggggccgaggaaggggctaGGGGGAACACGGACACCTTAAGC
TCCCCATTACAAGTCGCGCGTAAGGTCAACGGCCATGTTCAATTCTTGAA
GGATAAGTCCTCCCAAAGCCCCCCTGGTCTCGTCCCTCTGCACCACAACA
ACCAACTCCTGGATCTCCGCAACTACCACCGCCACAAAAATGGCATCTAC
ATGGACGTCTTTTCGCATTTGGGGGATGTACTAATGCCTGGCACCCGCCG
TCGGGACTGTCGGGCTTTTCCCGCAcgggacctcctccccttgtcccctG
TGATGCATGAAGCATACGAAGCTGTGGCCCTGGGGTTGGAAGAAAATAAA
ATCGACCACTGTGTGTGTCGGGACGACTGGATCTCATGCGAGGCGGACAT
TGCACGTCTGCGTCATAAATATTGGGTGTTGAGGCTCATCGATTGGTGGG
CGCCTCGGGAAGCAGAGGGCGGTGTGAGGGAATAGAGAAAAAGTAGCATA
TCATGTCTTAATGACCTTCGTTTCAGCGCATGCATCAACAATGTAAGCGT
TAGAAGCCATGCTGCACAAAAGTACCCGGCAGACACTCCTTTAAATCAAA
CGAAGGGGAGTGCTTGTACTCAGGAAGCGGCACCTTCATGTATCAAACAC
GCC back to topCoding sequence (CDS) from alignment at CM002457.1:306573..308525+ >rna1313 ID=rna1313|Name=rna1313|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at CM002457.1:306573..308525+ (Nannochloropsis gaditana)
ATGTCGACATTTGGTACTCGTGCCGTCGGAAATGCATTTTCACTGAAATG
GGTGATTCGGGGGGTCGCGGGACTTATAATTATAAACATTTTTCTCCAAA
CGGGCTTTTTTCTCCCCGGACCGATCTTAAGCTCCACCGGGCGGCATGAT
GCTGTTTGCACGCCATTTGATCCGGTAGCAGCTCCGTTTTCATTGCATTT
ACTAGGCAGCGCTTTTAACTTTACCCCGGCGACCCCTATGGCCACGCCCG
ATGCCCTCTTCCACGGGAAAGGCATCGTTATTGCCGCATCTGGCGCAATA
GCTCGACAGGCTGCGGGCGCTTACGTCACAGCGCTTGTTTTGAGAACGGT
ATTGCACGAGGACCTTCCTATCGAAATCTTTTACTCGGGGCCCGAGGAAG
CCTTCCAAGGTCCTGTCCTGAAAGCATTGGAAGCATTGCCTGATGTCCGC
CTACTCGACTTGGAAAGTGCCTTGAGTAACCTCCATGCCCGGGGCCTTCG
GACATTGgagccccttccttccctgcagGCACTTAGAGGGTACGCCGCCA
AAGCCTACGCCATGCAAGCTTGCTCCTTCCAAGAGGCTTTGCTCTTCGAT
GCGGGGGCCATTCCTTTtgttcctgcctcccgcttcttcggATTGCCGTC
CTACCACCGACACGGCCTCGCCGTCTTTAGTGACTACGTCAGCATCGACG
CTGCCCAATGGCGGTATATCCTGCAGGGTATGTGCCTGGACGTCCGGCAG
GTCGCCCGGGCCCTCAACGGGAGGGAGCTCGACAGCTCCTGTGTCGTGAT
GGACAAGCGTCGAAACGCCGACGCCTTGGCCGTGTCCCTGGCCTTGAATG
GGCCGTGCCAGGCACTCACGTACGCCACCTTGTGGGGCGACAAGGACACC
TGGGCGTTGGCCATGTTTTATGTGGGCAAGACGGTGTCCGTGCGTGAATG
CGAGCCAGGGTACCTGCTGAAGGCGCGCCCCtctggcgagggaggggggg
agggagggggggagggaggggccgaggaaggggctaGGGGGAACACGGAC
ACCTTAAGCTCCCCATTACAAGTCGCGCGTAAGGTCAACGGCCATGTTCA
ATTCTTGAAGGATAAGTCCTCCCAAAGCCCCCCTGGTCTCGTCCCTCTGC
ACCACAACAACCAACTCCTGGATCTCCGCAACTACCACCGCCACAAAAAT
GGCATCTACATGGACGTCTTTTCGCATTTGGGGGATGTACTAATGCCTGG
CACCCGCCGTCGGGACTGTCGGGCTTTTCCCGCAcgggacctcctcccct
tgtcccctGTGATGCATGAAGCATACGAAGCTGTGGCCCTGGGGTTGGAA
GAAAATAAAATCGACCACTGTGTGTGTCGGGACGACTGGATCTCATGCGA
GGCGGACATTGCACGTCTGCGTCATAAATATTGGGTGTTGAGGCTCATCG
ATTGGTGGGCGCCTCGGGAAGCAGAGGGCGGTGTGAGGGAATAG back to top
|