rna1309, rna1309 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1309
Unique Name	rna1309
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1245
Alignment location	CM002457.1:297150..298780 +

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans isomerase, FKBP-type
Orig transcript id	gnl\|cribi\|Naga_100028g27.3309.mrna
Orig protein id	gnl\|cribi\|Naga_100028g27.3309
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:297150..298780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g27	gene1263	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1309	rna1309-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29373.1	cds1307	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:297150..298780+
coding sequence from alignment at CM002457.1:297150..298780+

mRNA sequence

>rna1309 ID=rna1309|Name=rna1309|organism=Nannochloropsis gaditana|type=mRNA|length=1245bp
ATGCCACAGAGAAAACTGGGGGCTTCTCAGCATTTCATCCTCTGCCTGGC
AATTTTGTCGGCACCCCTAACAAGTCGAAAGCAAATTTGTAGCACGAGAA
GCCAGGACACTCCTCGTCCATCCCTGCTTCTTAACCGGCAAGGAACCTCC
TCCTGTACAGTGACCAGTTTTGCTCCCTCGCCCGCCCTCGCAGTTGCTCC
CCTATGGTCATGGTCGCCACTTTCTTTCTTCAGTGCAATTGAAACCTCTC
GCGGGCACAATTATCCGTGCGCCTGCCAACACGGTCGGGTTCGAGGCTGG
CATCCTCTTACGAATGCACCGTTAGTCCGAGCCTTGGGTGACAACTTTGA
AGACCAATTAAAGCAAACGACCGCCACTACTCATTCGTTTGGACCTGAGA
AGCTTTCCACCATGCCCTCAACCGCATCCAGGTCAGCTACAACGCTTCGA
GAGATGGATGTCCGCGTCCCGTCAAGGGACGGTGTGCATATTGCCTGCAA
AGTTAGTAACAAACGAAGCCCTTACGCGGTCGTCATATCTCACCCCTACG
GACCGTTAGGAGGCCATTTGGGAAACAACGTCGTGTGGGCTCTAACGCAG
CACCTGTCTCGTTTCGGGTTTACGACCCTGCGGTTCAACTTTCGGGGCGT
CCTCCCGTCCACGGGTCGCACGTCTTGGACGGGGGCAGGAGAGAAAGCGG
ATATGCGTGCCGTCTGCGAGTATGCCTTGACCGCGCTTCAAGACCCGCCA
CAAAAACTTTTGATCGTGGGGTACAGTCATGGCAGCGTGGTAGGCGCGGC
CCTAGGGGGGGAAATGCCCGAAGTGCACGCCTACGCTGCAATTGCTTATC
CCTTCAGTGTCGCTTTCGCTCTGACACTGTTCAATCATCGGGGATTCCTG
GATTCGGCAGCACGGGGAAACAAGCACAAACTGTTTGTCATGGGGAGCCA
GGATCAATTCACGAGGATCGGTGCCTTTGCTCGAAGGACGCGCGAGCTTC
CCCCCCCCACCGAAGTGGTGACCATGGAGGGGGCTGACCACTTCTTCTTT
GGGAGGGAGGCATCCTTGTGTGCAATTGTTCAGACGTGGCTCGAGAAAGT
GTTCGGCACTGATGAATTGAAGCTGGTTACGGCGTCGGCTGATCCTCTTC
CTCTCGCCCCTGGAGGACTGAGAGTACGGACGGAATTGAGCACGGAGACC
TGTGACGCGGGTAGGCAAGAGCTAATAACCGAGCGAGATATTTGA

protein sequence of rna1309

>rna1309-protein ID=rna1309-protein|Name=rna1309|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MLRRLFFLTLSAVVVLTASAKQGDGVDLDPNEKLRVGVKFRPDSCDIKSK
KGDMLSMHYTGTLYKDGSKFDSSLDRNQPFEFTLGQGQVIKGWDNGLLNM
CVGEKRRLTIPSSLGYGDRGAGAKIPGGATLVFEVELLGINNSDKGKEF

mRNA from alignment at CM002457.1:297150..298780+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1309 ID=rna1309|Name=rna1309|organism=Nannochloropsis gaditana|type=mRNA|length=1631bp|location=Sequence derived from alignment at CM002457.1:297150..298780+ (Nannochloropsis gaditana)
TGTGGCATGGGCGCAAGCGTAACAGATTCATGTTAGCCTCCGCAATGTCG
GGATATCGCCAGCACGGATGAGACTCGCCCAAGAAAACATCGTTTCAAAA
TAAAAGCCCCCCCACGACCCTCGAAAGGCCACGCTTAATGTTTGCTGCCA
TCCACGTGGATTTGGCAAATTTTACTCGTTTATGGTATTGCGCGTGGTGA
ACTAGAGGTAGATATTTCTCGGGCGTGGTTTTCCCCACAACTGAAACCCG
ATAATGGCTGATTTGAGCGACATGCTGATTCAAACCAATCCCGATACAGC
GACTCCCGAAAACCACCATGCTTCgccgccttttcttcctgacTCTCTCG
GCCGTGGTGGTCTTGACGGCCTCTGCTAAACAGGGGGATGGCGTGGACCT
CGACCCGAACGAGAAATTGGTAAGGGGAGACGCGGAAGGAGGGTCTTGTT
CAAAGGTGTGAGGGGCCTCACAGTGATATTCTTCCAACAGCGCGTAGGTG
TCAAATTCCGCCCGGACTCTTGCGACATTAAGTCTAAGAAGGGTGACATG
TTGTCAATGCATTACACGGGGACCCTGTACAAGGATGGGAGCAAGTTTGA
TTCAAGCTTGGACCGCAACCAACCTTTCGAATTCACGCTGGGGCAGGGCC
AGGtgcgtcttcctctttgacaTGCCTCCTTTCGCGGCTTTCCGTTGACA
CGAAGACCTTTTCTCACGCGCTCCATACTGTGCTTGGACAGGTTATCAAG
GGTTGGGACAATGGCCTCTTGAACATGTGTAAGTGAATAGGGGGGCTTGG
TTTATCAAGGAACATATTCTCGGTGCCCGTTTCTGTCGACTTCATCCCCT
CTGGCACCCCCATTCGTCTCTGGGCCTACTCAACGCCGCCCGCCCGGCGT
TATCCCTCCATGATTTGACAGGCGTGGGCGAGAAACGTCGTTTGACGATC
CCGTCGTCTCTTGGGTACGGAGACCGTGGCGCGGTGAGTCATCTCGTTGC
CCTGATCCCATGCTCGGTCAACGTCGGCTATACGTCACGTTCACCACCGT
AATGTTTGCCATTTGTTGCGCAAACGGCTGTCTTTTTGTACACAGTTCCT
TTATTGCATTATTTGAAGCACTTTCGTCCCCCCCTCAGACGGCTAACATT
GTCACGGCACCATGCTTCCCCAATCATTCGCAGGGTGCCAAGATCCCCGG
CGGTGCCACCTTGGTCTTCGAAGTGGAGCTTCTGGGCATCAACAACTCGG
ACAAGGGCAAAGAGTTCTAAACGCGCACGGCCATCCAGACTATGAGGTAG
GGTCCGATAGACCAGAGTCCGGTGTAGGAATCTATGCGGGGATACTCAAG
AGAAAATTGTCAGCCGAAGATGAGTAGGGGAATAGAAAGAAGGGGTACCT
GCAAAGGATTCGGATGGTCTCGAGGCACAAGTGCTTTCGCCCCGTCGAAG
GACTTCAGCAGGCAGCGAGATGAAGGGGTAACAGTTACAGAAAAAAAATC
ATGACCAAGACCGAACCGGCGCGAACGATGGGCTCCAGGCTATAAAACAT
AACATTTTCTTTCATGTTTCCGGCTGAATGTTTCAGGTCTCACCGCAGTC
GCGCTTTGTCACCCCGGTGCGGGAACCACCC

Coding sequence (CDS) from alignment at CM002457.1:297150..298780+

>rna1309 ID=rna1309|Name=rna1309|organism=Nannochloropsis gaditana|type=CDS|length=2250bp|location=Sequence derived from alignment at CM002457.1:297150..298780+ (Nannochloropsis gaditana)
ATGCTTCgccgccttttcttcctgacTCTCTCGGCCGTGGTGGTCTTGAC
GGCCTCTGCTAAACAGGGGGATGGCGTGGACCTCGACCCGAACGAGAAAT
TGCGCGTAGGTGTCAAATTCCGCCCGGACTCTTGCGACATTAAGTCTAAG
AAGGGTGACATGTTGTCAATGCATTACACGGGGACCCTGTACAAGGATGG
GAGCAAGTTTGATTCAAGCTTGGACCGCAACCAACCTTTCGAATTCACGC
TGGGGCAGGGCCAGGTTATCAAGGGTTGGGACAATGGCCTCTTGAACATG
TGCGTGGGCGAGAAACGTCGTTTGACGATCCCGTCGTCTCTTGGGTACGG
AGACCGTGGCGCGGGTGCCAAGATCCCCGGCGGTGCCACCTTGGTCTTCG
AAGTGGAGCTTCTGGGCATCAACAACTCGGACAAGGGCAAAGAGTTCTAA
ATGCTTCgccgccttttcttcctgacTCTCTCGGCCGTGGTGGTCTTGAC
GGCCTCTGCTAAACAGGGGGATGGCGTGGACCTCGACCCGAACGAGAAAT
TGCGCGTAGGTGTCAAATTCCGCCCGGACTCTTGCGACATTAAGTCTAAG
AAGGGTGACATGTTGTCAATGCATTACACGGGGACCCTGTACAAGGATGG
GAGCAAGTTTGATTCAAGCTTGGACCGCAACCAACCTTTCGAATTCACGC
TGGGGCAGGGCCAGGTTATCAAGGGTTGGGACAATGGCCTCTTGAACATG
TGCGTGGGCGAGAAACGTCGTTTGACGATCCCGTCGTCTCTTGGGTACGG
AGACCGTGGCGCGGGTGCCAAGATCCCCGGCGGTGCCACCTTGGTCTTCG
AAGTGGAGCTTCTGGGCATCAACAACTCGGACAAGGGCAAAGAGTTCTAA
ATGCTTCgccgccttttcttcctgacTCTCTCGGCCGTGGTGGTCTTGAC
GGCCTCTGCTAAACAGGGGGATGGCGTGGACCTCGACCCGAACGAGAAAT
TGCGCGTAGGTGTCAAATTCCGCCCGGACTCTTGCGACATTAAGTCTAAG
AAGGGTGACATGTTGTCAATGCATTACACGGGGACCCTGTACAAGGATGG
GAGCAAGTTTGATTCAAGCTTGGACCGCAACCAACCTTTCGAATTCACGC
TGGGGCAGGGCCAGGTTATCAAGGGTTGGGACAATGGCCTCTTGAACATG
TGCGTGGGCGAGAAACGTCGTTTGACGATCCCGTCGTCTCTTGGGTACGG
AGACCGTGGCGCGGGTGCCAAGATCCCCGGCGGTGCCACCTTGGTCTTCG
AAGTGGAGCTTCTGGGCATCAACAACTCGGACAAGGGCAAAGAGTTCTAA
ATGCTTCgccgccttttcttcctgacTCTCTCGGCCGTGGTGGTCTTGAC
GGCCTCTGCTAAACAGGGGGATGGCGTGGACCTCGACCCGAACGAGAAAT
TGCGCGTAGGTGTCAAATTCCGCCCGGACTCTTGCGACATTAAGTCTAAG
AAGGGTGACATGTTGTCAATGCATTACACGGGGACCCTGTACAAGGATGG
GAGCAAGTTTGATTCAAGCTTGGACCGCAACCAACCTTTCGAATTCACGC
TGGGGCAGGGCCAGGTTATCAAGGGTTGGGACAATGGCCTCTTGAACATG
TGCGTGGGCGAGAAACGTCGTTTGACGATCCCGTCGTCTCTTGGGTACGG
AGACCGTGGCGCGGGTGCCAAGATCCCCGGCGGTGCCACCTTGGTCTTCG
AAGTGGAGCTTCTGGGCATCAACAACTCGGACAAGGGCAAAGAGTTCTAA
ATGCTTCgccgccttttcttcctgacTCTCTCGGCCGTGGTGGTCTTGAC
GGCCTCTGCTAAACAGGGGGATGGCGTGGACCTCGACCCGAACGAGAAAT
TGCGCGTAGGTGTCAAATTCCGCCCGGACTCTTGCGACATTAAGTCTAAG
AAGGGTGACATGTTGTCAATGCATTACACGGGGACCCTGTACAAGGATGG
GAGCAAGTTTGATTCAAGCTTGGACCGCAACCAACCTTTCGAATTCACGC
TGGGGCAGGGCCAGGTTATCAAGGGTTGGGACAATGGCCTCTTGAACATG
TGCGTGGGCGAGAAACGTCGTTTGACGATCCCGTCGTCTCTTGGGTACGG
AGACCGTGGCGCGGGTGCCAAGATCCCCGGCGGTGCCACCTTGGTCTTCG
AAGTGGAGCTTCTGGGCATCAACAACTCGGACAAGGGCAAAGAGTTCTAA

Synonyms

Publications