rna1308, rna1308 (mRNA) Nannochloropsis gaditana

Overview
Namerna1308
Unique Namerna1308
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1252
Alignment locationCM002457.1:295840..297157 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100028g26.3297.mrna
Orig protein idgnl|cribi|Naga_100028g26.3297
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:295840..297157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100028g26gene1262Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1308rna1308-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29361.1cds1306Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1308 ID=rna1308|Name=rna1308|organism=Nannochloropsis gaditana|type=mRNA|length=1252bp
CTGAACGAAGTATCGCCAAGTCTTGCTGCGCTTCCTCCGTCTCGTTTCAC
ATGCCTAGAAAGAAAAGTGACCACATACTAAACATTCTTCTTGACTCATC
AGAAACATGCTCACAGATGAGCAGCGGGCCAGAATAGAAGAAAATCGGAA
GCGGGCATTGGCTTTGCGCGCACGAAAGGAAAAGGAAAGACTCCAGCAGC
ACGCCGAGCTTCTACGGGAACAGCAACTGCAGCTCACCGCGGCCGATACC
AATACGCCCGAAAGCAGTAGTCAGGCCCTTCAAAACCTGCTAGCTCAGGG
AGGATTTACAAGAGAAGGCCCGGAGGACGAGGGAGACTCCACAGACAGTG
TCCCGACGGCGGCACCTAGTGCCCCCGTGCCGAAAGCAACACAAGTGGAA
GGGAAGGGGCTGTCCTGTGAAGTATGTGGAAGCGGGCTGGTGGACCCAAT
GTACCACGATGTGTTCCGTATTACTGTCTGTACTCCATGCAAGAACAATA
ACGAGGAGGAGTACGGGCTGGTGACGAAGGGAGATGCGGTCGCCGAGTTT
CTGCTGCAGGAAGGCACCATGCGCGTAATGCCTTATCTCGAACGCAACAA
CCCTCGAAACACGAAATACCAAAAGATGAAACTATACTGTCGAAGGCTTC
TACGGGCCAAGGCGTACGAGCGCTGGGATGGCCCGGAGGGATTGGCGGAA
GAAAGAAATCGCCGCAGGGAGCGGCGCTACGAGAGTGCGATCGATAAGAC
CTTGAACGTCTTCGCGAAAACTACTAAGAAAGCAAAAATTTGGTCTCAAA
AATAGAGGCTCCAGAAGTAGTTCGCCCGACACTTTGTGACTAGTGCACTG
AACTTTTCGAGAACTTCGGGGCGCAAGGCCTTTCCCACGTCCACCTTCGA
CCAAGGTATTTCCAACTTAACCAAAATCATGGGGCAGGAGACTCCTGTAC
TCCTGGCCCATGAGTCTCCTGCCCCACGTTCTGGTTAGGTTGGAGATACC
TTGCGCTCCGAAGTTCTCGAAGTGCAGTAATCCATCTGTCCAACGTTGTT
AGGTCGAGGTTCTTGTTGTGTCGGGCGATTGATTCGACGACACAATTCCA
CGACACGTCTCACCATGTGATTTAGTCGGTAAGTCGGTCAAAGAAAAAAA
ATGGCTGGTCCCGAAAGAAGACGTAATCAAATCCAGATACTCCAGTCGGG
TATCAAATATCTCGCTCGGTTATTAGCTCTTGCCTACCCGCGTCACAGGT
CT
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protein sequence of rna1308

>rna1308-protein ID=rna1308-protein|Name=rna1308|organism=Nannochloropsis gaditana|type=polypeptide|length=414bp
MPQRKLGASQHFILCLAILSAPLTSRKQICSTRSQDTPRPSLLLNRQGTS
SCTVTSFAPSPALAVAPLWSWSPLSFFSAIETSRGHNYPCACQHGRVRGW
HPLTNAPLVRALGDNFEDQLKQTTATTHSFGPEKLSTMPSTASRSATTLR
EMDVRVPSRDGVHIACKVSNKRSPYAVVISHPYGPLGGHLGNNVVWALTQ
HLSRFGFTTLRFNFRGVLPSTGRTSWTGAGEKADMRAVCEYALTALQDPP
QKLLIVGYSHGSVVGAALGGEMPEVHAYAAIAYPFSVAFALTLFNHRGFL
DSAARGNKHKLFVMGSQDQFTRIGAFARRTRELPPPTEVVTMEGADHFFF
GREASLCAIVQTWLEKVFGTDELKLVTASADPLPLAPGGLRVRTELSTET
CDAGRQELITERDI
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mRNA from alignment at CM002457.1:295840..297157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1308 ID=rna1308|Name=rna1308|organism=Nannochloropsis gaditana|type=mRNA|length=1318bp|location=Sequence derived from alignment at CM002457.1:295840..297157- (Nannochloropsis gaditana)
ATGCCACAGAGAAAACTGGGGGCTTCTCAGCATTTCATCCTCTGCCTGGC
AATTTTGTCGGCACCCCTAACAAGTCGAAAGCAAATTTGTAGCACGAGAA
GCCAGGACACTCCTCGTCCATCCCTGCTTCTTAACCGGCAAGGAACCTCC
TCCTGTACAGTGACCAGTTTTGCTCCCTCGCCCGCCCTCGCAGTTGCTCC
CCTATGGTCATGGTCGCCACTTTCTTTCTTCAGTGCAATTGAAACCTCTC
GCGGGCACAATTATCCGTGCGCCTGCCAACACGGTCGGGTTCGAGGCTGG
CATCCTCTTACGAATGCACCGTTAGTCCGAGCCTTGGGTGACAACTTTGA
AGACCAATTAAAGCAAACGACCGCCACTACTCATTCGTTTGGACCTGAGA
AGCTTTCCACCATGCCCTCAACCGCATCCAGGTCAGCTACAACGCTTCGA
GAGATGGATGTCCGCGTCCCGTCAAGGGACGGTGTGCATATTGCCTGCAA
AGTTAGTAACAAACGAAGCCCTTACGCGGTCGTCATATCTCACCCCTACG
GACCGTTAGGAGGCCATTTGGGAAACAACGTCGTGTGGGCTCTAACGCAG
CACCTGTCTCGTTTCGGGTTTACGACCCTGCGGTTCAACTTTCGGGGCGT
CCTCCCGTCCACGGGTCGCACGTCTTGGACGGGGGCAGGAGAGAAAGCGG
ATATGCGTGCCGTCTGCGAGTATGCCTTGACCGCGCTTCAAGACCCGCCA
CAAAAACTTTTGATCGTGGGGTACAGTCATGGCAGCGTGGTAGGCGCGGC
CCTAGGGGGGGAAATGCCCGAAGTGCACGCCTACGCTGCAATTGCTTATC
CCTTCAGTGTCGCTTTCGCTCTGACACTGTTCAATCATCGGGGATTCCTG
GATTCGGCAGCACGGGGAAACAAGCACAAACTGTTTGTCATGGGGAGCCA
GGATCAATTCACGAGGATCGGTGCCTTTGCTCGAAGGACGCGCGAGCTTC
CCCCCCCCACCGAAGTGGTGACCATGGAGGGGGCTGACCACTTCTTCTTT
GGGAGGGAGGCATCCTTGTGTGCAATTGTTCAGACGTGGCTCGAGAAAGT
GTTCGGCACTGATGAATTGAAGCTGGTTACGGCGTCGGCTGATCCTCTTC
CTCTCGCCCCTGTGAGTGCCTCCCTCGCGGCCGCGCAATTGCAGGCGCCA
GCCGACCGAGGTATGGGCCGTCATGGCTTCGAAGGGAGGACTGAGAGTAC
GGACGGAATTGAGCACGGAGACCTGTGACGCGGGTAGGCAAGAGCTAATA
ACCGAGCGAGATATTTGA
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Coding sequence (CDS) from alignment at CM002457.1:295840..297157-

>rna1308 ID=rna1308|Name=rna1308|organism=Nannochloropsis gaditana|type=CDS|length=2490bp|location=Sequence derived from alignment at CM002457.1:295840..297157- (Nannochloropsis gaditana)
GGAGGACTGAGAGTACGGACGGAATTGAGCACGGAGACCTGTGACGCGGG
TAGGCAAGAGCTAATAACCGAGCGAGATATTTGAATGCCACAGAGAAAAC
TGGGGGCTTCTCAGCATTTCATCCTCTGCCTGGCAATTTTGTCGGCACCC
CTAACAAGTCGAAAGCAAATTTGTAGCACGAGAAGCCAGGACACTCCTCG
TCCATCCCTGCTTCTTAACCGGCAAGGAACCTCCTCCTGTACAGTGACCA
GTTTTGCTCCCTCGCCCGCCCTCGCAGTTGCTCCCCTATGGTCATGGTCG
CCACTTTCTTTCTTCAGTGCAATTGAAACCTCTCGCGGGCACAATTATCC
GTGCGCCTGCCAACACGGTCGGGTTCGAGGCTGGCATCCTCTTACGAATG
CACCGTTAGTCCGAGCCTTGGGTGACAACTTTGAAGACCAATTAAAGCAA
ACGACCGCCACTACTCATTCGTTTGGACCTGAGAAGCTTTCCACCATGCC
CTCAACCGCATCCAGGTCAGCTACAACGCTTCGAGAGATGGATGTCCGCG
TCCCGTCAAGGGACGGTGTGCATATTGCCTGCAAAGTTAGTAACAAACGA
AGCCCTTACGCGGTCGTCATATCTCACCCCTACGGACCGTTAGGAGGCCA
TTTGGGAAACAACGTCGTGTGGGCTCTAACGCAGCACCTGTCTCGTTTCG
GGTTTACGACCCTGCGGTTCAACTTTCGGGGCGTCCTCCCGTCCACGGGT
CGCACGTCTTGGACGGGGGCAGGAGAGAAAGCGGATATGCGTGCCGTCTG
CGAGTATGCCTTGACCGCGCTTCAAGACCCGCCACAAAAACTTTTGATCG
TGGGGTACAGTCATGGCAGCGTGGTAGGCGCGGCCCTAGGGGGGGAAATG
CCCGAAGTGCACGCCTACGCTGCAATTGCTTATCCCTTCAGTGTCGCTTT
CGCTCTGACACTGTTCAATCATCGGGGATTCCTGGATTCGGCAGCACGGG
GAAACAAGCACAAACTGTTTGTCATGGGGAGCCAGGATCAATTCACGAGG
ATCGGTGCCTTTGCTCGAAGGACGCGCGAGCTTCCCCCCCCCACCGAAGT
GGTGACCATGGAGGGGGCTGACCACTTCTTCTTTGGGAGGGAGGCATCCT
TGTGTGCAATTGTTCAGACGTGGCTCGAGAAAGTGTTCGGCACTGATGAA
TTGAAGCTGGTTACGGCGTCGGCTGATCCTCTTCCTCTCGCCCCTGGAGG
ACTGAGAGTACGGACGGAATTGAGCACGGAGACCTGTGACGCGGGTAGGC
AAGAGCTAATAACCGAGCGAGATATTTGAATGCCACAGAGAAAACTGGGG
GCTTCTCAGCATTTCATCCTCTGCCTGGCAATTTTGTCGGCACCCCTAAC
AAGTCGAAAGCAAATTTGTAGCACGAGAAGCCAGGACACTCCTCGTCCAT
CCCTGCTTCTTAACCGGCAAGGAACCTCCTCCTGTACAGTGACCAGTTTT
GCTCCCTCGCCCGCCCTCGCAGTTGCTCCCCTATGGTCATGGTCGCCACT
TTCTTTCTTCAGTGCAATTGAAACCTCTCGCGGGCACAATTATCCGTGCG
CCTGCCAACACGGTCGGGTTCGAGGCTGGCATCCTCTTACGAATGCACCG
TTAGTCCGAGCCTTGGGTGACAACTTTGAAGACCAATTAAAGCAAACGAC
CGCCACTACTCATTCGTTTGGACCTGAGAAGCTTTCCACCATGCCCTCAA
CCGCATCCAGGTCAGCTACAACGCTTCGAGAGATGGATGTCCGCGTCCCG
TCAAGGGACGGTGTGCATATTGCCTGCAAAGTTAGTAACAAACGAAGCCC
TTACGCGGTCGTCATATCTCACCCCTACGGACCGTTAGGAGGCCATTTGG
GAAACAACGTCGTGTGGGCTCTAACGCAGCACCTGTCTCGTTTCGGGTTT
ACGACCCTGCGGTTCAACTTTCGGGGCGTCCTCCCGTCCACGGGTCGCAC
GTCTTGGACGGGGGCAGGAGAGAAAGCGGATATGCGTGCCGTCTGCGAGT
ATGCCTTGACCGCGCTTCAAGACCCGCCACAAAAACTTTTGATCGTGGGG
TACAGTCATGGCAGCGTGGTAGGCGCGGCCCTAGGGGGGGAAATGCCCGA
AGTGCACGCCTACGCTGCAATTGCTTATCCCTTCAGTGTCGCTTTCGCTC
TGACACTGTTCAATCATCGGGGATTCCTGGATTCGGCAGCACGGGGAAAC
AAGCACAAACTGTTTGTCATGGGGAGCCAGGATCAATTCACGAGGATCGG
TGCCTTTGCTCGAAGGACGCGCGAGCTTCCCCCCCCCACCGAAGTGGTGA
CCATGGAGGGGGCTGACCACTTCTTCTTTGGGAGGGAGGCATCCTTGTGT
GCAATTGTTCAGACGTGGCTCGAGAAAGTGTTCGGCACTGATGAATTGAA
GCTGGTTACGGCGTCGGCTGATCCTCTTCCTCTCGCCCCT
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Synonyms
Publications