rna1307, rna1307 (mRNA) Nannochloropsis gaditana

Overview
Namerna1307
Unique Namerna1307
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1217
Alignment locationCM002457.1:294638..295889 +

Link to JBrowse

Properties
Property NameValue
Productdna repair protein rad14
Orig transcript idgnl|cribi|Naga_100028g25.3296.mrna
Orig protein idgnl|cribi|Naga_100028g25.3296
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:294638..295889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100028g25gene1261Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1307rna1307-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29360.1cds1305Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1307 ID=rna1307|Name=rna1307|organism=Nannochloropsis gaditana|type=mRNA|length=1217bp
GGTACATTGAACGGCCTACCCGTGGACAACGAAACACACAAATTGTACAA
GGAAAAGAGCATCTGTACGGACGTATTACACACCTACACAGACAAGTTAA
GGGTGAATTTCTGTGGCTTGTCAAGGCATTCAATTCGGCGGTCTTGAAGG
TTTTATGGCCCTGTTTGTCGCGGGCGGCGATCACGGTGTGCTATGGTACA
GCGGCATTTTGAAGGACAGTTTCCTCTTCCCCACCATGAGAATTTATTCA
AATATTTGCGAATACACATATGTGGGGATGAAATTCTCTACAGGGACATC
CCATGGGCGCTGGCTGGAGCAGCAGTTACGCTTGAGGCATTAAACCACTA
CGATTCAGACAAGACAATGCCTTCCCAAGTTGGTGATTTGTTTCCAAATG
TTGACCTCTGGGTTTTGGAGCCTGCACACTCCGACAATAAACCTCGTCAA
CCAGTTTCTGTTCACTCCTGGGAACTTGTTAAAGGCAAACGGCGCGTAAT
TTTCGTGGGCATTCCAGGACCGTTCACGCCTGGGTGCTCAAAAAGCCACG
TCCCCGGTTTCATCGAGACAGCCCTCCGCTTGCAAGCCAAGGGCATAGAT
GACATATACGTGATCAGCACCGCGGACGCATTTGTCATGGACGCCTTTGC
CAGAACCTTGGGGACTGACAAGCAAAGGCAACCTCTCGCGATTACATTTT
TGGCGGATGGGAACCATGCTCTTACGAAAGCATTGGATATGGAGCTGGAT
GGATCAGCGCGCGGGATGGGCATGCGAATGCAACGTTTCGCTATGGTAGT
GAACGGCGATGGTGTCATTGAGGACTTGCTGGTGGATCCCTCGGGCCATA
TTAAATTTTCACGGGCGGAAAATGTTTTGAGTCGTCTGTGAATGAACTGA
GAGAAACATTCGACATGGGAAACAAGCACGCTTCGTTCTGAAGTGTGGCT
TCTGCGCTTTGATCATATTAACGAGTACTGGTTGATTTTACTTTGGTACT
GGAACAGAAGGCTCTTTCGAAAGGCTTGTGCAATATCAATTAAACACGCA
TAATAAGCAACGTGAATGTTAAGGAAGCTATGTCAAACTTGGAAGCAGGT
GGCAACCTGCATATGATGGATTTCTTGTCGCGTTTTCTGACTCTTCGTTC
TGCGCGAAAGTGCAAACGCGTAGTCTACATATCAAAAATGCCGGCAGCGT
ACATCCCTTAATGACTC
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protein sequence of rna1307

>rna1307-protein ID=rna1307-protein|Name=rna1307|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNT
PESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGK
GLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLL
QEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEER
NRRRERRYESAIDKTLNVFAKTTKKAKIWSQK
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mRNA from alignment at CM002457.1:294638..295889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1307 ID=rna1307|Name=rna1307|organism=Nannochloropsis gaditana|type=mRNA|length=1252bp|location=Sequence derived from alignment at CM002457.1:294638..295889+ (Nannochloropsis gaditana)
CTGAACGAAGTATCGCCAAGTCTTGCtgcgcttcctccgtctcgttTCAC
ATGCCTAGAAAGAAAAGTGACCACATACTAAACATTCTTCTTGACTCATC
AGAAACATGCTCACAGATGAGCAGCGGGCCAGAATAGAAGAAAATCGGAA
GCGGGCATTGGCTTTGCGCGcacgaaaggaaaaggaaagactCCAGCAGC
ACGCCGAGCTTCTACGGGAACAGCAACTGCAGCTCACCGCGGCCGATACC
AATACGCCCGAAAGCAGTAGTCAGGCCCTTCAAAACCTGCTAGCTCAGGG
AGGATTTACAAGAGAAGgcccggaggacgagggagactcCACAGACAGTG
TCCCGACGGCGGCACCTAGTGCCCCCGTGCCGAAAGCAACAcaagtggaa
gggaaggggctgTCCTGTGAAGTATGTGGAAGCGGGCTGGTGGACCCAAT
GTACCACGATGTGTTCCGTATTACTGTCTGTACTCCATGCAAGAACAAta
acgaggaggagtacggGCTGGTGACGAAGGGAGATGCGGTCGCCGAGTTT
CTGCTGCAGGAAGGCACCATGCGCGTAATGCCTTATCTCGAACGCAACAA
CCCTCGAAACACGAAATACCAAAAGATGAAACTATACTGTCGAAGGCTTC
TACGGGCCAAGGCGTACGAGCGCTGGGATGGCCCGGAGGGATtggcggaa
gaaagaaaTCGCCGCAGGGAGCGGCGCTACGAGAGTGCGATCGATAAGAC
CTTGAACGTCTTCGCGAAAACTACTAAGAAAGCAAAAATTTGGTCTCAAA
AATAGAGGCTCCAGAAGTAGTTCGCCCGACACTTTGTGACTAGTGCACTG
AACTTTTCGAGAACTTCGGGGCGCAAGGCCTTTCCCACGTCCACCTTCGA
CCAAGGTATTTCCAACTTAACCAAAATCATGGGGCAGGAGACTCCTGTAC
TCCTGGCCCATGAGTCTCCTGCCCCACGTTCTGGTTAGGTTGGAGATACC
TTGCGCTCCGAAGTTCTCGAAGTGCAGTAATCCATCTGTCCAACGTTGTT
AGGTCGAGGTTCTTGTTGTGTCGGGCGATTGATTCGACGACACAATTCCA
CGACACGTCTCACCATGTGATTTAGTCGGTAAGTCGgtcaaagaaaaaaa
atggctGGTCCCGAAAGAAGACGTAATCAAATCCAGATACTCCAGTCGGG
TATCAAATATCTCGCTCGGTTATTAGCTCTTGCCTACCCGCGTCACAGGT
CT
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Coding sequence (CDS) from alignment at CM002457.1:294638..295889+

>rna1307 ID=rna1307|Name=rna1307|organism=Nannochloropsis gaditana|type=CDS|length=699bp|location=Sequence derived from alignment at CM002457.1:294638..295889+ (Nannochloropsis gaditana)
ATGCTCACAGATGAGCAGCGGGCCAGAATAGAAGAAAATCGGAAGCGGGC
ATTGGCTTTGCGCGcacgaaaggaaaaggaaagactCCAGCAGCACGCCG
AGCTTCTACGGGAACAGCAACTGCAGCTCACCGCGGCCGATACCAATACG
CCCGAAAGCAGTAGTCAGGCCCTTCAAAACCTGCTAGCTCAGGGAGGATT
TACAAGAGAAGgcccggaggacgagggagactcCACAGACAGTGTCCCGA
CGGCGGCACCTAGTGCCCCCGTGCCGAAAGCAACAcaagtggaagggaag
gggctgTCCTGTGAAGTATGTGGAAGCGGGCTGGTGGACCCAATGTACCA
CGATGTGTTCCGTATTACTGTCTGTACTCCATGCAAGAACAAtaacgagg
aggagtacggGCTGGTGACGAAGGGAGATGCGGTCGCCGAGTTTCTGCTG
CAGGAAGGCACCATGCGCGTAATGCCTTATCTCGAACGCAACAACCCTCG
AAACACGAAATACCAAAAGATGAAACTATACTGTCGAAGGCTTCTACGGG
CCAAGGCGTACGAGCGCTGGGATGGCCCGGAGGGATtggcggaagaaaga
aaTCGCCGCAGGGAGCGGCGCTACGAGAGTGCGATCGATAAGACCTTGAA
CGTCTTCGCGAAAACTACTAAGAAAGCAAAAATTTGGTCTCAAAAATAG
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Synonyms
Publications