EWM29360.1, cds1305 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|585111888|gb|EWM29360.1| (dna repair protein rad14 [Nannochloropsis gaditana]) HSP 1 Score: 479.945 bits (1234), Expect = 1.482e-171 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query: 1 MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKKAKIWSQK 232
MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKKAKIWSQK
Sbjct: 1 MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKKAKIWSQK 232
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1026267995|gb|OAD01118.1| (DNA-binding transcription regulator [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 98.5969 bits (244), Expect = 3.506e-21 Identity = 64/209 (30.62%), Postives = 108/209 (51.67%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRALALRARKEKERLQ-QHAELLREQQLQLTAADTNTPESSSQALQNLL-AQGGFTREGPEDEG--DSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
LT EQR RI N+ +AL ++A K K + Q Q E ++ + T + + L L+ ++GGF + DE D + A P +T+ + C+ C S +DP++ +VF + +C CK E+Y L+TK +A ++LL + ++ ++P+ + NP + + M LY R ++ A+++WDGPEGL E RR
Sbjct: 19 LTQEQRDRIAANKAKALEIQAAKRKAKEQAQPNEAPKKAKWIKTFYEYD--------LSTLVDSKGGFIVDETSDEKKFDENKKEKSYAIEPYFPPSTEA-SENPKCKECSSMDLDPVFFNVFHMYLCPTCKEKFPEKYSLITKTEAKEDYLLTDPELKDPDLLPHWSKPNPHKSTWNDMMLYVREMVEEYAFKKWDGPEGLDAEYERR 218
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|661183154|emb|CDH54519.1| (dna repair protein rad14 [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 98.5969 bits (244), Expect = 4.733e-21 Identity = 64/206 (31.07%), Postives = 103/206 (50.00%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRAL-ALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
LT+EQR RIEEN+ +AL L+A++++E Q+ R + + D +T + +GGF E ++ A +P + + C CGS VDP++ VF ++VC CK E Y L+TK +A ++LL + +R ++P+ + NPR + M LY R ++ A+++W G EGL E RR
Sbjct: 33 LTEEQRKRIEENKAKALEKLKAKRQREE-QESKRPKRARWTKYYEYDLST---------MVDTKGGFMIEETREDKLIKSRREEATKISPFIPMSSDPSENPKCRDCGSQDVDPIFFQVFHMSVCPRCKEKYPERYSLITKTEAKEDYLLTDPELRDTELLPHWSKPNPRKATWNNMMLYVREMVEEYAFKKWGGEEGLDAEYERR 228
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1183484947|gb|ORZ08697.1| (XPA protein C-terminus-domain-containing protein [Absidia repens]) HSP 1 Score: 96.6709 bits (239), Expect = 2.153e-20 Identity = 68/215 (31.63%), Postives = 102/215 (47.44%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAAD-TNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGL---------SCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
LTDEQR +IEEN+K+AL A + K L Q EL A T E ++N +GGF D + +AT++E L C+ C S VD + VF I+VC CK ++Y L+TK +A ++LL + ++ ++P+ + NPR + + M LY R ++ A+++W GPEGL E RR
Sbjct: 10 LTDEQRQKIEENKKKALEKLASRNKRALNQDDELTATSNSNNKKAKWTRFYEYDLSTMEN--TKGGFI----------VDEATEEKINRFKDQATKIEPNYLLSFDPLDMPKCKECQSMDVDNNFIQVFNISVCHACKEKYPDKYSLITKTEAREDYLLTDPELKDKELLPHWSKPNPRKSTWNNMMLYVREMVEEYAFKKWGGPEGLDAEYERR 212
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|671695644|emb|CDS10364.1| (hypothetical protein LRAMOSA03040 [Lichtheimia ramosa]) HSP 1 Score: 95.1301 bits (235), Expect = 7.031e-20 Identity = 62/206 (30.10%), Postives = 103/206 (50.00%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRAL-ALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
L++EQ RI++N+++AL L+A+++ E QQ R + + D +T + +GGF E +++ A +P + K C CGS VDP++ VF ++VC CK E Y L+TK +A ++LL + +R ++P+ + NPR + M LY R ++ A+++W G EGL E RR
Sbjct: 18 LSEEQLKRIQQNKEKALEKLKAKRQLEE-QQSKRPKRARWTKYYEYDLST---------MVDTKGGFMVEETKEDKLIKSRREEATKISPFIPMSSDPSKNPKCRDCGSMDVDPVFFQVFHMSVCPACKEKYPERYSLITKTEAKEDYLLTDPELRDTELLPHWSKPNPRKATWNNMMLYVREMVEEYAFKKWGGEEGLDAEYERR 213
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|511000503|gb|EPB82038.1| (hypothetical protein HMPREF1544_11242 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 93.5893 bits (231), Expect = 2.590e-19 Identity = 66/210 (31.43%), Postives = 108/210 (51.43%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRALALRARKEKERLQ-QHAELLREQQLQLTAADTNTPESSSQALQNLL-AQGGFTREGPEDEG--DSTDSVPTAAPSAPVPKATQVEG-KGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
LT EQ RI N+ RAL ++A K K R Q Q E ++ + T + + L L+ ++GGF + DE D + + A P A +E + C+ C S +DP++ +VF I +C CK E+Y L+TK +A ++LL + ++ ++P+ + NP + + M LY R ++ A+++W+GPEGL E RR
Sbjct: 16 LTQEQLDRIAANKARALEIQAAKRKAREQAQPTEAPKKAKWIKTFYEYD--------LSTLVDSKGGFIVDETSDEKKFDENKNEKSYA-IEPYYLAPSLEASENPKCKECTSMDLDPVFFNVFHIFLCPTCKEKFPEKYSLITKTEAKEDYLLTDPELKDPELLPHWSKPNPHKSTWNDMMLYVREMVEEYAFKKWNGPEGLDAEYERR 216
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|758346996|dbj|GAN10559.1| (DNA repair protein rad14 [Mucor ambiguus]) HSP 1 Score: 92.8189 bits (229), Expect = 5.300e-19 Identity = 61/209 (29.19%), Postives = 106/209 (50.72%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRALALRARKEKERLQ-QHAELLREQQLQLTAADTNTPESSSQALQNLL-AQGGFTREGPEDEG--DSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
LT EQ RI N+ +AL ++A K K + Q + E ++ + T + + L L+ ++GGF + DE D + A P + + + C+ C S +DP++ +VF + +C CK E+Y L+TK +A ++LL + ++ ++P+ + NP + + M LY R ++ A+++WDGPEGL E RR
Sbjct: 16 LTQEQLDRIAANKAKALEIQAAKRKAKEQAEPKEAPKKAKWIKTFYEYD--------LSTLVDSKGGFIVDETSDEKKFDENKKEKSYAIEPYFPPSLEA-SENPKCKECSSMDLDPVFFNVFHMFLCPTCKEKFPEKYSLITKTEAKEDYLLTDPELKDPELLPHWSKPNPHKSTWNDMMLYVREMVEEYAFKKWDGPEGLDAEYERR 215
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1183338197|gb|ORX67199.1| (DNA repair protein [Linderina pennispora]) HSP 1 Score: 92.4337 bits (228), Expect = 6.796e-19 Identity = 67/221 (30.32%), Postives = 109/221 (49.32%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRV---MPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGL-------AEERNRRRERRYESAI 212
LTD+Q+ +IEENRK+AL R + K R ++++L+ + TN E + +++ + GF E P+ + + T P +TQ C C S +D Y VF++ VC C + ++Y L+TK +A ++LL +G +R +P E+ NP + M LY R L A A E+W G E L E+ R+ER+Y+ ++
Sbjct: 5 LTDDQKQKIEENRKKALE-RLKATKARTDTAKPPEQKKRLRGSKMSTNYYEYNLTTMRD--TKAGFIEEDPQKSPEKRRKILTLDEIPYDPSSTQ------KCRECASLDLDVAYLKVFKVPVCRKCIESVPDKYSLLTKTEAKDDYLLTDGELRDRERLPVWEKPNPHKHTWNNMLLYLREHLEAFAIEKWGGLEELDGEFARRETEKQERKERKYKKSV 216
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|597901480|ref|XP_007298039.1| (hydrophilic protein [Stereum hirsutum FP-91666 SS1] >gi|389751605|gb|EIM92678.1| hydrophilic protein [Stereum hirsutum FP-91666 SS1]) HSP 1 Score: 92.8189 bits (229), Expect = 1.080e-18 Identity = 72/238 (30.25%), Postives = 105/238 (44.12%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQ-LQLTAADTNTPESSSQALQNLL-------------------AQGGFTRE----------GPEDEGDSTDSVPTAAPSAPVPKATQV---EGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
LT EQ RIE NR RA A + +KE L ++ L + A + +P S+ Q L ++GGF E E E + +V P P + V +GK C CGS +D Y VFR VC CKN E+Y L+TK + ++LL + +R +MP+L + NP + + M L+CR + A+++W PE L E N+R
Sbjct: 25 LTPEQVKRIEMNRLRAKAQQRQKETASSSSSLPNLNNKRPLAVVPATSTSPTGPSRQQQQKLKRDTRLGKYFDYDLSKMVNSKGGFLVEDDKEVDEVHKAKEKERERQRAVQNLDPRTYYPFYSAVYLEKGKNPKCAECGSIDLDQTYRKVFRCLVCNKCKNEKPEKYSLLTKTECREDYLLTDSELRDEEIMPHLLKANPHKSTFANMMLFCRFQVEEFAWKKWGSPEALDAEWNKR 262
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1183475406|gb|ORY99263.1| (DNA repair protein RAD14 [Syncephalastrum racemosum]) HSP 1 Score: 91.2781 bits (225), Expect = 1.902e-18 Identity = 68/214 (31.78%), Postives = 103/214 (48.13%), Query Frame = 0
Query: 2 LTDEQRARIEENRKRALALRARK------EKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDE---GDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
LTDEQ+ RIEEN+ +AL A+K E E QQ R Q+ D +T E S +GGF E + + + ++V P P+ + K C C S VDP ++ +F ++VC CK E Y L+TK +A ++LL + +R ++P+ + NPR + M LY R ++ A+++W EGL E RR
Sbjct: 4 LTDEQKKRIEENKAKALEKLAQKRKATEQETEDPQQRRRKARWQKY--YDYDLSTIEDS---------KGGFLVEETKSDQKLKELQENVTRIMPMIPLAADPNDQPK---CRDCKSLDVDPAFYQIFHLSVCPKCKEKFPERYSLITKTEAKEDYLLTDPELRDRELLPHWLKPNPRKPMWSNMMLYVREMVEEYAFKKWGSAEGLDAEYERR 203 The following BLAST results are available for this feature:
BLAST of EWM29360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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