EWM29360.1, cds1305 (CDS) Nannochloropsis gaditana

Overview
NameEWM29360.1
Unique Namecds1305
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:294744..295442 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29360.1
Productdna repair protein rad14
Orig transcript idgnl|cribi|Naga_100028g25.3296.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:294744..295442 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003684damaged DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009061DNA-bd_dom_put
IPR000465XPA
IPR022656XPA_C
Homology
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|585111888|gb|EWM29360.1| (dna repair protein rad14 [Nannochloropsis gaditana])

HSP 1 Score: 479.945 bits (1234), Expect = 1.482e-171
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKKAKIWSQK 232
            MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKKAKIWSQK
Sbjct:    1 MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKKAKIWSQK 232          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1026267995|gb|OAD01118.1| (DNA-binding transcription regulator [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 98.5969 bits (244), Expect = 3.506e-21
Identity = 64/209 (30.62%), Postives = 108/209 (51.67%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRALALRARKEKERLQ-QHAELLREQQLQLTAADTNTPESSSQALQNLL-AQGGFTREGPEDEG--DSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            LT EQR RI  N+ +AL ++A K K + Q Q  E  ++ +   T  + +        L  L+ ++GGF  +   DE   D      + A     P +T+   +   C+ C S  +DP++ +VF + +C  CK    E+Y L+TK +A  ++LL +  ++   ++P+  + NP  + +  M LY R ++   A+++WDGPEGL  E  RR
Sbjct:   19 LTQEQRDRIAANKAKALEIQAAKRKAKEQAQPNEAPKKAKWIKTFYEYD--------LSTLVDSKGGFIVDETSDEKKFDENKKEKSYAIEPYFPPSTEA-SENPKCKECSSMDLDPVFFNVFHMYLCPTCKEKFPEKYSLITKTEAKEDYLLTDPELKDPDLLPHWSKPNPHKSTWNDMMLYVREMVEEYAFKKWDGPEGLDAEYERR 218          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|661183154|emb|CDH54519.1| (dna repair protein rad14 [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 98.5969 bits (244), Expect = 4.733e-21
Identity = 64/206 (31.07%), Postives = 103/206 (50.00%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRAL-ALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            LT+EQR RIEEN+ +AL  L+A++++E  Q+     R +  +    D +T          +  +GGF  E   ++         A   +P    +    +   C  CGS  VDP++  VF ++VC  CK    E Y L+TK +A  ++LL +  +R   ++P+  + NPR   +  M LY R ++   A+++W G EGL  E  RR
Sbjct:   33 LTEEQRKRIEENKAKALEKLKAKRQREE-QESKRPKRARWTKYYEYDLST---------MVDTKGGFMIEETREDKLIKSRREEATKISPFIPMSSDPSENPKCRDCGSQDVDPIFFQVFHMSVCPRCKEKYPERYSLITKTEAKEDYLLTDPELRDTELLPHWSKPNPRKATWNNMMLYVREMVEEYAFKKWGGEEGLDAEYERR 228          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1183484947|gb|ORZ08697.1| (XPA protein C-terminus-domain-containing protein [Absidia repens])

HSP 1 Score: 96.6709 bits (239), Expect = 2.153e-20
Identity = 68/215 (31.63%), Postives = 102/215 (47.44%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAAD-TNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGL---------SCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            LTDEQR +IEEN+K+AL   A + K  L Q  EL          A  T   E     ++N   +GGF            D       +    +AT++E   L          C+ C S  VD  +  VF I+VC  CK    ++Y L+TK +A  ++LL +  ++   ++P+  + NPR + +  M LY R ++   A+++W GPEGL  E  RR
Sbjct:   10 LTDEQRQKIEENKKKALEKLASRNKRALNQDDELTATSNSNNKKAKWTRFYEYDLSTMEN--TKGGFI----------VDEATEEKINRFKDQATKIEPNYLLSFDPLDMPKCKECQSMDVDNNFIQVFNISVCHACKEKYPDKYSLITKTEAREDYLLTDPELKDKELLPHWSKPNPRKSTWNNMMLYVREMVEEYAFKKWGGPEGLDAEYERR 212          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|671695644|emb|CDS10364.1| (hypothetical protein LRAMOSA03040 [Lichtheimia ramosa])

HSP 1 Score: 95.1301 bits (235), Expect = 7.031e-20
Identity = 62/206 (30.10%), Postives = 103/206 (50.00%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRAL-ALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            L++EQ  RI++N+++AL  L+A+++ E  QQ     R +  +    D +T          +  +GGF  E  +++         A   +P    +    K   C  CGS  VDP++  VF ++VC  CK    E Y L+TK +A  ++LL +  +R   ++P+  + NPR   +  M LY R ++   A+++W G EGL  E  RR
Sbjct:   18 LSEEQLKRIQQNKEKALEKLKAKRQLEE-QQSKRPKRARWTKYYEYDLST---------MVDTKGGFMVEETKEDKLIKSRREEATKISPFIPMSSDPSKNPKCRDCGSMDVDPVFFQVFHMSVCPACKEKYPERYSLITKTEAKEDYLLTDPELRDTELLPHWSKPNPRKATWNNMMLYVREMVEEYAFKKWGGEEGLDAEYERR 213          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|511000503|gb|EPB82038.1| (hypothetical protein HMPREF1544_11242 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 93.5893 bits (231), Expect = 2.590e-19
Identity = 66/210 (31.43%), Postives = 108/210 (51.43%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRALALRARKEKERLQ-QHAELLREQQLQLTAADTNTPESSSQALQNLL-AQGGFTREGPEDEG--DSTDSVPTAAPSAPVPKATQVEG-KGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            LT EQ  RI  N+ RAL ++A K K R Q Q  E  ++ +   T  + +        L  L+ ++GGF  +   DE   D   +  + A   P   A  +E  +   C+ C S  +DP++ +VF I +C  CK    E+Y L+TK +A  ++LL +  ++   ++P+  + NP  + +  M LY R ++   A+++W+GPEGL  E  RR
Sbjct:   16 LTQEQLDRIAANKARALEIQAAKRKAREQAQPTEAPKKAKWIKTFYEYD--------LSTLVDSKGGFIVDETSDEKKFDENKNEKSYA-IEPYYLAPSLEASENPKCKECTSMDLDPVFFNVFHIFLCPTCKEKFPEKYSLITKTEAKEDYLLTDPELKDPELLPHWSKPNPHKSTWNDMMLYVREMVEEYAFKKWNGPEGLDAEYERR 216          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|758346996|dbj|GAN10559.1| (DNA repair protein rad14 [Mucor ambiguus])

HSP 1 Score: 92.8189 bits (229), Expect = 5.300e-19
Identity = 61/209 (29.19%), Postives = 106/209 (50.72%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRALALRARKEKERLQ-QHAELLREQQLQLTAADTNTPESSSQALQNLL-AQGGFTREGPEDEG--DSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            LT EQ  RI  N+ +AL ++A K K + Q +  E  ++ +   T  + +        L  L+ ++GGF  +   DE   D      + A     P + +   +   C+ C S  +DP++ +VF + +C  CK    E+Y L+TK +A  ++LL +  ++   ++P+  + NP  + +  M LY R ++   A+++WDGPEGL  E  RR
Sbjct:   16 LTQEQLDRIAANKAKALEIQAAKRKAKEQAEPKEAPKKAKWIKTFYEYD--------LSTLVDSKGGFIVDETSDEKKFDENKKEKSYAIEPYFPPSLEA-SENPKCKECSSMDLDPVFFNVFHMFLCPTCKEKFPEKYSLITKTEAKEDYLLTDPELKDPELLPHWSKPNPHKSTWNDMMLYVREMVEEYAFKKWDGPEGLDAEYERR 215          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1183338197|gb|ORX67199.1| (DNA repair protein [Linderina pennispora])

HSP 1 Score: 92.4337 bits (228), Expect = 6.796e-19
Identity = 67/221 (30.32%), Postives = 109/221 (49.32%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEGDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRV---MPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGL-------AEERNRRRERRYESAI 212
            LTD+Q+ +IEENRK+AL  R +  K R        ++++L+ +   TN  E +   +++   + GF  E P+   +    + T       P +TQ       C  C S  +D  Y  VF++ VC  C  +  ++Y L+TK +A  ++LL +G +R    +P  E+ NP    +  M LY R  L A A E+W G E L         E+  R+ER+Y+ ++
Sbjct:    5 LTDDQKQKIEENRKKALE-RLKATKARTDTAKPPEQKKRLRGSKMSTNYYEYNLTTMRD--TKAGFIEEDPQKSPEKRRKILTLDEIPYDPSSTQ------KCRECASLDLDVAYLKVFKVPVCRKCIESVPDKYSLLTKTEAKDDYLLTDGELRDRERLPVWEKPNPHKHTWNNMLLYLREHLEAFAIEKWGGLEELDGEFARRETEKQERKERKYKKSV 216          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|597901480|ref|XP_007298039.1| (hydrophilic protein [Stereum hirsutum FP-91666 SS1] >gi|389751605|gb|EIM92678.1| hydrophilic protein [Stereum hirsutum FP-91666 SS1])

HSP 1 Score: 92.8189 bits (229), Expect = 1.080e-18
Identity = 72/238 (30.25%), Postives = 105/238 (44.12%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQ-LQLTAADTNTPESSSQALQNLL-------------------AQGGFTRE----------GPEDEGDSTDSVPTAAPSAPVPKATQV---EGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            LT EQ  RIE NR RA A + +KE          L  ++ L +  A + +P   S+  Q  L                   ++GGF  E            E E +   +V    P    P  + V   +GK   C  CGS  +D  Y  VFR  VC  CKN   E+Y L+TK +   ++LL +  +R   +MP+L + NP  + +  M L+CR  +   A+++W  PE L  E N+R
Sbjct:   25 LTPEQVKRIEMNRLRAKAQQRQKETASSSSSLPNLNNKRPLAVVPATSTSPTGPSRQQQQKLKRDTRLGKYFDYDLSKMVNSKGGFLVEDDKEVDEVHKAKEKERERQRAVQNLDPRTYYPFYSAVYLEKGKNPKCAECGSIDLDQTYRKVFRCLVCNKCKNEKPEKYSLLTKTECREDYLLTDSELRDEEIMPHLLKANPHKSTFANMMLFCRFQVEEFAWKKWGSPEALDAEWNKR 262          
BLAST of EWM29360.1 vs. NCBI_GenBank
Match: gi|1183475406|gb|ORY99263.1| (DNA repair protein RAD14 [Syncephalastrum racemosum])

HSP 1 Score: 91.2781 bits (225), Expect = 1.902e-18
Identity = 68/214 (31.78%), Postives = 103/214 (48.13%), Query Frame = 0
Query:    2 LTDEQRARIEENRKRALALRARK------EKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDE---GDSTDSVPTAAPSAPVPKATQVEGKGLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMR---VMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRR 203
            LTDEQ+ RIEEN+ +AL   A+K      E E  QQ     R Q+      D +T E S         +GGF  E  + +    +  ++V    P  P+      + K   C  C S  VDP ++ +F ++VC  CK    E Y L+TK +A  ++LL +  +R   ++P+  + NPR   +  M LY R ++   A+++W   EGL  E  RR
Sbjct:    4 LTDEQKKRIEENKAKALEKLAQKRKATEQETEDPQQRRRKARWQKY--YDYDLSTIEDS---------KGGFLVEETKSDQKLKELQENVTRIMPMIPLAADPNDQPK---CRDCKSLDVDPAFYQIFHLSVCPKCKEKFPERYSLITKTEAKEDYLLTDPELRDRELLPHWLKPNPRKPMWSNMMLYVREMVEEYAFKKWGSAEGLDAEYERR 203          
The following BLAST results are available for this feature:
BLAST of EWM29360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111888|gb|EWM29360.1|1.482e-171100.00dna repair protein rad14 [Nannochloropsis gaditana... [more]
gi|1026267995|gb|OAD01118.1|3.506e-2130.62DNA-binding transcription regulator [Mucor circine... [more]
gi|661183154|emb|CDH54519.1|4.733e-2131.07dna repair protein rad14 [Lichtheimia corymbifera ... [more]
gi|1183484947|gb|ORZ08697.1|2.153e-2031.63XPA protein C-terminus-domain-containing protein [... [more]
gi|671695644|emb|CDS10364.1|7.031e-2030.10hypothetical protein LRAMOSA03040 [Lichtheimia ram... [more]
gi|511000503|gb|EPB82038.1|2.590e-1931.43hypothetical protein HMPREF1544_11242 [Mucor circi... [more]
gi|758346996|dbj|GAN10559.1|5.300e-1929.19DNA repair protein rad14 [Mucor ambiguus][more]
gi|1183338197|gb|ORX67199.1|6.796e-1930.32DNA repair protein [Linderina pennispora][more]
gi|597901480|ref|XP_007298039.1|1.080e-1830.25hydrophilic protein [Stereum hirsutum FP-91666 SS1... [more]
gi|1183475406|gb|ORY99263.1|1.902e-1831.78DNA repair protein RAD14 [Syncephalastrum racemosu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1307rna1307Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications