rna1302, rna1302 (mRNA) Nannochloropsis gaditana

Overview
Namerna1302
Unique Namerna1302
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1152
Alignment locationCM002457.1:284274..285471 +

Link to JBrowse

Properties
Property NameValue
ProductHistidine phosphatase superfamily, clade-1
Orig transcript idgnl|cribi|Naga_100028g19.3304.mrna
Orig protein idgnl|cribi|Naga_100028g19.3304
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:284274..285471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100028g19gene1256Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1302rna1302-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29368.1cds1300Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1302 ID=rna1302|Name=rna1302|organism=Nannochloropsis gaditana|type=mRNA|length=1152bp
ATGGCAGAGTGTGTTCAACACATTGACGCGGATATTTCCCCCCATGCAGC
TTCAGACGCCCTCCTGCGGGAACTCGAAGAAGCCGGTGGCGATGGCCTCG
GCGGCCCTGGGACACCGACGCTTTTTACTTCCTCATCTCCATCGCACATT
GCCGCACCTGGGCTGATTCAATCAAAGTGCTGCTCTGCAGCGGCCGAGAA
TCCTGCGGCAGACGTGGTCTTGGGCCCGTATGCCGTCCAAGAAACCTGTG
TCATACTCGACTGGGACGATACGCTATTTCCTTCCTCCTTCGTGGACAGG
AAAAAACTCATCCATTGCCGAGGGCTGGACGAGTTGCCTTCGGAGCTACA
GCGGGGGTTTGCGGAACTGGAAAAGGCCGCCGCAGGCTTGATTACAGCGG
CGACAAAATATGGCACTGTATTGATCATCACGAATGCGCAGACTGGGTGG
GTGGAGCTTTGTGTGTCAAAATTTATGCCTGGTCTTATGGCTGTGCTAGG
AATCTCTGTCCGCGTCGTCTCAGCCCGGTCCAACTACGAACGGTACTTTC
CTGGCGATCCGTTGTGTTGGAAATCCGCAGCTTTCGCCCACGAACTCACG
CAGCTTCAGAATTCTCAGGGACATCCACTGAAGAACCTGTTGTCCTTTGG
GGACTCCATGGAAGAGCGCACAGCGGTGCAGATCGCCGCGGGTCATCTCC
AAGGTGCCCGTGCCAAATCGGTCAAGTTTTTAGATGCTCCCAGCCCTCGC
GAGTTGCATCAACAGATCGAGGTGGTCACGGACTGCCTGGAGTGGATCTG
GCGGCACAATGGGGCCCTGGACGTAGTGTTGACGCTGGAACAGGAACGTC
ATGACCCCTCGCAGAAGCCAACGGACGGGACGAACAAGACTGGAGAGCAT
ACATCCGGACAACCGCAACTGCAGCCGCCGCAGTCTCGGAGAGCGACCAC
CTTGTCTCCTATTTCGGTCCCGGCTTCTATGGAGGGGGATTTGAATACAC
CAGGGTCAGATACGGGCCGCGAGGACAAGTTTAAATCCGGGGCGGCACCG
CTTGTGGTGACACCGTCGGGTGTGGACGAGATTGGGGAGCTTGAGCTCGC
GGATGCCATGCATGTTGTCACTGACGAAGAGGAAAGCGAGGACGAAAATT
AA
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protein sequence of rna1302

>rna1302-protein ID=rna1302-protein|Name=rna1302|organism=Nannochloropsis gaditana|type=polypeptide|length=306bp
MTATVTGGKTREENEQGQGQEELKLQQGGRKLREHEGRALTPEQVKDLCF
SLTKHPRVKAFPVSNAPEDVPAGMQIKTVYFVRHAEALHNEAFKIRGRAA
YADPSFLDPKLTKLGVSQCLALKPSVEAIQSSIDLVVVSPLRRALMTAAL
AFDHRREVSWIALETVRERIGKNTCDKRRRRGVLEAEYPDVDFENIGEED
TRWTEHHRETPAEMAERGLEFLAWLRGRPEDRIGVVTHSAFLSTLFAEVF
ECADPAMSRWGGTDRGERFWRTEQKSAYISLTKWCENRRHSKYHMIRLFL
FPICKN
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mRNA from alignment at CM002457.1:284274..285471+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1302 ID=rna1302|Name=rna1302|organism=Nannochloropsis gaditana|type=mRNA|length=1198bp|location=Sequence derived from alignment at CM002457.1:284274..285471+ (Nannochloropsis gaditana)
ATGACCGCAACAGTGACTGGCGGAAAGACtcgggaggagaacgagcaAGG
TcaagggcaggaggagctgaagctacaacaggggggaaggaaactaCGGG
AGCATGAAGGCCGGGCGTTGACACCGGAGCAAGTAAAAGACCTCTGTTTT
TCTTTAACCAAGCATCCGCGTGTAAAGGCCTTTCCTGTTTCCAACGCCCC
CGAAGATGTTCCTGCCGGCATGCAAATCAAGACTGTTTATTTTGTTCGAC
ACGCCGAAGGTAAGTACCCACTTGAACCCGTGCAGTGTCTGAACAAAGga
cgccttcctttccttgtgcATCTCCCTGGTAAATCCGTTCAGCTGTGTAC
TTCGCACGAGCAAACATGCATCTTTAATTTGACTTACATACTTTCTTTCA
AGCAAATGCTTTTCATAAATCGGTTCGGGCTCATTGCTTGTCTGTCTTTG
CTTTCCTCGCAAACTGCACAGCATTGCACAACGAGGCATTTAAAATACGT
GGCCGGGCAGCCTATGCAGATCCAAGCTTTCTCGACCCTAAATTGACGAA
ATTAGGAGTATCGCAGTGCCTGGCACTCAAGCCATCCGTGGAAGCCATAC
AGTCTTCCATCGACTTGGTGGTTGTCTCCCCGCTGCGCCGTGCTCTCATG
ACAGCCGCTCTGGCGTTCGATCACAGAAGGGAGGTCTCATGGATCGCGCT
TGAAACCGTGCGGGAGCGGATTGGGAAGAATACCTGCGATAAACggcgaa
gacgaggagtGCTTGAAGCcgaatacccggatgtaGATTTTGAGAACata
ggagaggaagacacaCGGTGGACTGAGCATCACAGAGAGACGCCTGCAGA
GATGGCAGAACGGGGATTGGAGTTCTTGGCGTGGCTTCGAGGGCGTCCGG
AAGATCGGATCGGGGTCGTCACTCAttccgccttcctttccaccctgTTC
GCCGAGGTCTTCGAGTGCGCGGACCCAGCCATGTCCCGCTGGTTCGAAAA
TGCTGAGCTGCGTGCCGTTTACTTGATTTTGTGATTTTAATAAAGAGAAA
GGCCAGGGGTGGGACGGATCGGGGAGAGCGGTTTTGGAGGACAGAACAGA
AGTCTGCGTATATTTCCTTGACCAAATGGTGTGAAAATCGAAGACATAGT
AAATACCACATGATACGGCTCTTCTTGTTCCCCATTTGTAAAAATTAG
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Coding sequence (CDS) from alignment at CM002457.1:284274..285471+

>rna1302 ID=rna1302|Name=rna1302|organism=Nannochloropsis gaditana|type=CDS|length=2763bp|location=Sequence derived from alignment at CM002457.1:284274..285471+ (Nannochloropsis gaditana)
ATGACCGCAACAGTGACTGGCGGAAAGACtcgggaggagaacgagcaAGG
TcaagggcaggaggagctgaagctacaacaggggggaaggaaactaCGGG
AGCATGAAGGCCGGGCGTTGACACCGGAGCAAGTAAAAGACCTCTGTTTT
TCTTTAACCAAGCATCCGCGTGTAAAGGCCTTTCCTGTTTCCAACGCCCC
CGAAGATGTTCCTGCCGGCATGCAAATCAAGACTGTTTATTTTGTTCGAC
ACGCCGAAGCATTGCACAACGAGGCATTTAAAATACGTGGCCGGGCAGCC
TATGCAGATCCAAGCTTTCTCGACCCTAAATTGACGAAATTAGGAGTATC
GCAGTGCCTGGCACTCAAGCCATCCGTGGAAGCCATACAGTCTTCCATCG
ACTTGGTGGTTGTCTCCCCGCTGCGCCGTGCTCTCATGACAGCCGCTCTG
GCGTTCGATCACAGAAGGGAGGTCTCATGGATCGCGCTTGAAACCGTGCG
GGAGCGGATTGGGAAGAATACCTGCGATAAACggcgaagacgaggagtGC
TTGAAGCcgaatacccggatgtaGATTTTGAGAACataggagaggaagac
acaCGGTGGACTGAGCATCACAGAGAGACGCCTGCAGAGATGGCAGAACG
GGGATTGGAGTTCTTGGCGTGGCTTCGAGGGCGTCCGGAAGATCGGATCG
GGGTCGTCACTCAttccgccttcctttccaccctgTTCGCCGAGGTCTTC
GAGTGCGCGGACCCAGCCATGTCCCGCTGGGGTGGGACGGATCGGGGAGA
GCGGTTTTGGAGGACAGAACAGAAGTCTGCGTATATTTCCTTGACCAAAT
GGTGTGAAAATCGAAGACATAGTAAATACCACATGATACGGCTCTTCTTG
TTCCCCATTTGTAAAAATTAGATGACCGCAACAGTGACTGGCGGAAAGAC
tcgggaggagaacgagcaAGGTcaagggcaggaggagctgaagctacaac
aggggggaaggaaactaCGGGAGCATGAAGGCCGGGCGTTGACACCGGAG
CAAGTAAAAGACCTCTGTTTTTCTTTAACCAAGCATCCGCGTGTAAAGGC
CTTTCCTGTTTCCAACGCCCCCGAAGATGTTCCTGCCGGCATGCAAATCA
AGACTGTTTATTTTGTTCGACACGCCGAAGCATTGCACAACGAGGCATTT
AAAATACGTGGCCGGGCAGCCTATGCAGATCCAAGCTTTCTCGACCCTAA
ATTGACGAAATTAGGAGTATCGCAGTGCCTGGCACTCAAGCCATCCGTGG
AAGCCATACAGTCTTCCATCGACTTGGTGGTTGTCTCCCCGCTGCGCCGT
GCTCTCATGACAGCCGCTCTGGCGTTCGATCACAGAAGGGAGGTCTCATG
GATCGCGCTTGAAACCGTGCGGGAGCGGATTGGGAAGAATACCTGCGATA
AACggcgaagacgaggagtGCTTGAAGCcgaatacccggatgtaGATTTT
GAGAACataggagaggaagacacaCGGTGGACTGAGCATCACAGAGAGAC
GCCTGCAGAGATGGCAGAACGGGGATTGGAGTTCTTGGCGTGGCTTCGAG
GGCGTCCGGAAGATCGGATCGGGGTCGTCACTCAttccgccttcctttcc
accctgTTCGCCGAGGTCTTCGAGTGCGCGGACCCAGCCATGTCCCGCTG
GGGTGGGACGGATCGGGGAGAGCGGTTTTGGAGGACAGAACAGAAGTCTG
CGTATATTTCCTTGACCAAATGGTGTGAAAATCGAAGACATAGTAAATAC
CACATGATACGGCTCTTCTTGTTCCCCATTTGTAAAAATTAGATGACCGC
AACAGTGACTGGCGGAAAGACtcgggaggagaacgagcaAGGTcaagggc
aggaggagctgaagctacaacaggggggaaggaaactaCGGGAGCATGAA
GGCCGGGCGTTGACACCGGAGCAAGTAAAAGACCTCTGTTTTTCTTTAAC
CAAGCATCCGCGTGTAAAGGCCTTTCCTGTTTCCAACGCCCCCGAAGATG
TTCCTGCCGGCATGCAAATCAAGACTGTTTATTTTGTTCGACACGCCGAA
GCATTGCACAACGAGGCATTTAAAATACGTGGCCGGGCAGCCTATGCAGA
TCCAAGCTTTCTCGACCCTAAATTGACGAAATTAGGAGTATCGCAGTGCC
TGGCACTCAAGCCATCCGTGGAAGCCATACAGTCTTCCATCGACTTGGTG
GTTGTCTCCCCGCTGCGCCGTGCTCTCATGACAGCCGCTCTGGCGTTCGA
TCACAGAAGGGAGGTCTCATGGATCGCGCTTGAAACCGTGCGGGAGCGGA
TTGGGAAGAATACCTGCGATAAACggcgaagacgaggagtGCTTGAAGCc
gaatacccggatgtaGATTTTGAGAACataggagaggaagacacaCGGTG
GACTGAGCATCACAGAGAGACGCCTGCAGAGATGGCAGAACGGGGATTGG
AGTTCTTGGCGTGGCTTCGAGGGCGTCCGGAAGATCGGATCGGGGTCGTC
ACTCAttccgccttcctttccaccctgTTCGCCGAGGTCTTCGAGTGCGC
GGACCCAGCCATGTCCCGCTGGGGTGGGACGGATCGGGGAGAGCGGTTTT
GGAGGACAGAACAGAAGTCTGCGTATATTTCCTTGACCAAATGGTGTGAA
AATCGAAGACATAGTAAATACCACATGATACGGCTCTTCTTGTTCCCCAT
TTGTAAAAATTAG
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Synonyms
Publications