rna1297, rna1297 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1297
Unique Name	rna1297
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2102
Alignment location	CM002457.1:270584..272544 -

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Properties


Property Name	Value
Product	peroxisomal membrane 22 kda (mpv17 pmp22) family protein
Orig transcript id	gnl\|cribi\|Naga_100028g11.3311.mrna
Orig protein id	gnl\|cribi\|Naga_100028g11.3311
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:270584..272544 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g11	gene1251	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29375.1	cds1295	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1297	rna1297-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:270584..272544-
coding sequence from alignment at CM002457.1:270584..272544-

mRNA sequence

>rna1297 ID=rna1297|Name=rna1297|organism=Nannochloropsis gaditana|type=mRNA|length=2102bp
ACCAGCTTCACTCTGTAGTAGTAGAATTTAAAAATCCATCGCAATCTATT
ACGTCTTCCAGTGAAGTGTGACAACGAGTTGATAGCTTTATGATTTATCA
TATCCGACACATGAAACGTCGATTTCATGACAGATATTAGCATGTAAGCG
AGATGGGCCTATTGACGCAATCTAATTACTCGTAGGACTTTTTGATACTT
TAAAGTGCAACATAATTACTTTGCCCTAAAAAGAGGTTGTTGATCCTGTT
TCTTAAATTATGATATGAAGCATGTGTCACTCTGACGCAGCAGGAGCACT
TGAAATGGATTTTAATCACAAGTGCTTCACCTGTCCCACAGCAGTCTGGA
ACGAGTAAGGGTACATACACACCAGCCACAAACTTTTTAAAATAAGATAT
TGGGTGAAGTTTTGCAGTCTATGGAATGCACTGGTACTTGTGACGTGCTT
AGTCTCGTTATATGTTTAACAATGTACCAGCACACTCGCGCGTCAGCACC
CCTTTTTGAGAAAACCCATGCGTTTCATAATTTTTATTGCTGAATTTGAA
TGCCAAGAATAAAAATCTATAGATCAGGAAAATGGAAGAGTTCCGTCTTC
CTGCCACACCAACAGCTCGAGATTACTGTTCACTTGAGACACAGGGGCAC
CTTAAGGAGCTTGGTTTACACAACGCCCGATGGTCCTTTCGCACCGACCA
TTATCAGAGCCATGGATCAAAAACTGGTTCATCACAGCAGCACTATTAAT
CGCCTTCTTGTACTGTGCTGAGGCTTACGTCCCTGTGGGTCCTCCTGCTA
TGCCGAAACCATCCAGCCCTCATTTTAGCTCTGGTCCTACCAAAAAGCGT
CCGGGCTACGACCTTGCGAAACTTCCCATCGATACTCTGGGTCGTTCACA
CCGCTCTAGTGAATGCCTGGGACGTATACAACGCGCGTTGGAGCTGACGA
GGGACATTTTGGGTATCCCTGGAGAATTTCGACTGGCGTTGTTGCCTGGG
GGGGGGGACACAGGGGCTTTCGAAGCCGCGCTGTGGTCTTTGGTGGGCAC
GAAGGGAGTCCCCGTCCAAGCTTTGGTCTGGGAAGCATTCGGTCAAGGTT
GGTACGACGACTTGACGACTCAATTAAAAGTGGAGGAGGTGGAGCTGGTC
TCGGCGCCCTATGGAGAGCTCCCGGACTTGTCCCAAGTGAGCGCGGGAGA
GAACGACGTCTGTTTTGTTTACAACGGGACCACCAGTGGCGTCTGTCTTC
CTGACGATGGAGCACCCTGGATCCCTCCTTCTGGTGCAGGAAAGGGTCGT
GGCCTAACTTTGTGCGATGCTACGTCGGCGTGTTTTTGCATGCCGTTGCC
CTGGGAAAAATTGGACGTAACCACTTTCTCGTGGCAGAAGGCTTTAGGGG
GGGAAGGAGCGCACGGAATACTGGTGCTCTCTCCGCGGGCTCTGGCACGT
TTGGAGGAAAACGGTCGTTCTGGGCTTCTGGCCGCAAGAGGGATCCCGAA
GCTTCTCCGCCTTGCCCCCGATCCCTCCACCGGCACCGTGCCCGAAGGTC
TGTGGACCGGCTCCACGATCAACACGCCTTCCATGCTTTGCGTGGAGGAT
TACTTGGATGCCCTGCAATGGGCGCAGGAAAAAGGCGGCCTGCCGGCTTT
GATTGCCCGGACTCGGGCGAATCTCGAGGCGGTGGAGGCATTCGTGGCGA
AGAAGCCCTGGCTCTCTTTCTTGGCCTCGAATCCTCGCATCCGATCATCC
ACGAGCATATGCTTGAGGATAGAGGGATTGGAGGAGGCAGGAAGCACTGC
AAGGGGAGGAGGCTCACAGGTAAGACACAGACTGAAGGAGATGGCTGCGT
TGATGGAGAGGGAGGGCGTCGCGTACGACATCGCCTCCTACCGTGAAGCA
CCCCCCGGACTGCGGATATGGGGGGGACCGACCGTCGAGACGGAAGATAT
CCGAAGATTGTTGCCATGGATCGAATGGGCATACGACCGTGTAAAAACAA
CTAGCGGCTGAGCCGTGTCAAAAGAGAGCAGGGCGGTTTGGATGGGGAGA
GCACCGCTTCAAGAAACTATGGATGGTCAAGCGACCAAAACATACTTCTC
GA

protein sequence of rna1297

>rna1297-protein ID=rna1297-protein|Name=rna1297|organism=Nannochloropsis gaditana|type=polypeptide|length=430bp
MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCLPLP
SCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAAD
TPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDV
WRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQL
YEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWT
TFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSG
LKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAI
GDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLET
EDGQLRDHAEHHPEQEQQRAVSVHREDEFV

mRNA from alignment at CM002457.1:270584..272544-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1297 ID=rna1297|Name=rna1297|organism=Nannochloropsis gaditana|type=mRNA|length=1961bp|location=Sequence derived from alignment at CM002457.1:270584..272544- (Nannochloropsis gaditana)
ATCCGAGGACACAACCTGCTCAGGGGCACAGCACGTTTTTGGTTTGTTGC
CCGCCCGTGGGCACATGGTGGAGCCCCGATCTTGATCCCCGCCAAGTCAG
CGAGGCTGGGGTGGCATGGTCATTTCTTTGGAGGTGTTTGAAGTCACATC
TAATCACGTCGAAACGACCACACTTTCACGGCATTCACAGGTTTAAAGCA
TGCGAGGACGAGGCCTGGACGTGGGAGTGTTGGCGGTGTTTTGTTTGTGC
CTAGGGGCTGTGCGGGCATTTGTTGTCCCTGTGACGCCCGGACTTCACCA
TCTCAGCCGGAGCAGCAGCATAGGACCCAGCACTTGTCTTCCTTTACCTT
CCTGCGTTCCACCTGCCCGTACATCATGTGTATCTCGCCGGTGGGTGAAG
ACGCAGGCCAAGGACGAGGAGATTGCAAACGCGAAAGAGCACCGTTCCTT
TGCGCCTGTCACCTCTTTGGAGACCCTCTCTGAGCATGACGCGGCCGACA
CACCCCGTTCGCTACAGGAGCGGGTGCGTTTGTTCGCAGCCACGAAGGGA
GTGGATTCTCGCCAGCTGAATTTTTTGCTGAACGTGGGCCTGATATCCGC
TGTCGCGGCGCTCGTGTTGGCGAAGGTGGTCACCGTGGATCTGGACGTGT
GGCGCGGCTGGACTCCCGCCGAAATCTTCACACGCATTCCCCTAGACAAC
TGGGACGGGTACATGAACGTGCTGAGCCTGCATCCTGTCTTCGTCAAGGC
CGTGACCAGCGGCTCCGTCTACACCCTGGGGGATGGGGTCGCCCAGCTCT
ACGAGGGCAAGACGTTGGGGGAAATCGACCGCGGCCGCGTGGCTCGTTCC
GGTATCGCGGGCTTCGTCGGGCACGGGCCCCTCTCTCACTGGTGGTACGG
AGTGTCGGAGGATTTTTTCGGGTGGCTGGGCTGGGAAGGATGGTGGACGA
CCTTCCCGAAAATCACCGTGGACCAGCTCGTGTGGTCCCCGATCTGGAAC
GGGTGCTACATCTTCCTCCTGGGGGCCATGAAACGGGAGGCGCTGGGCGA
GATCGTGAACACGGTCAAATCTACCTCCTTCTCGCTCATCACCTCCGGTC
TGAAGCTCTGGCCGTTGGCGCATGTGGTCACCTACGGCGTCATTCCCGTG
GAGAACCGGTTGCTGTGGGTAGACCTGGTGGAGATCTTGTGGGTGACGAT
TTTGTCGCGGGAGGCGGCCAACGCGGACGCGGAGAAAGCGGAGGCGATAG
GAGACGTGGCGGTAGAGGAAGCCTCCTCCAAGACGTTGGCCGTGGTGGAC
AGTGAGACGATGCAGGCGCCGAGTGCCCGTGCCGCGGGTGACGACATGGA
GCCTGTGATTTTCATGCCGCTCGCGTCGAATGTCTCTGACCTGGAAACTG
AAGACGGCCAACTACGAGACCATGCAGAACACCACCCCGAGCAGGAGCAA
CAGAGGGCAGTGTCTGTGCACAGAGAGGATGAGTTCGTGTAAGAGGGGGA
GGGGGGGTGCATCGGGATCTTCACGTCCACTGTGTGTGGAGCGTAAGGAT
AGCCTGGTCGCATTTTTGTATAGTCTGATGATATTCTTTAGGGCGGCAAG
AGCGTAGACATATGTAGATAGCATGAAACCTCCGGTAAGCCTCTTTCTTG
AAGGAGCTGATACCGACAGGGGTAGGCCGTGAGAACCAGCCAGGGACCAC
TCTGTCCTCCTATCCTTTTGCGCAATGTGAAAGGCAGTCGTGGTAGGTAG
AAGGAGGCGGAGAGTGTAATATTTTGTTGGTGTGGTATGTGAGGCCGTAA
CAAATTTTAAATTGCATAGGAAGCGACCCTCGGGGTCCAACTTCGCGCGT
AATGGCTGTCTCGATTTAAAGTCGACCGGGAGGTTTGACACACTTAGCGT
CGCGTAAGAGTTAATTAAAAAAATTAAGGAAAAAATAACGGGCGACATAA
AAATATCATCG

Coding sequence (CDS) from alignment at CM002457.1:270584..272544-

>rna1297 ID=rna1297|Name=rna1297|organism=Nannochloropsis gaditana|type=CDS|length=1293bp|location=Sequence derived from alignment at CM002457.1:270584..272544- (Nannochloropsis gaditana)
ATGCGAGGACGAGGCCTGGACGTGGGAGTGTTGGCGGTGTTTTGTTTGTG
CCTAGGGGCTGTGCGGGCATTTGTTGTCCCTGTGACGCCCGGACTTCACC
ATCTCAGCCGGAGCAGCAGCATAGGACCCAGCACTTGTCTTCCTTTACCT
TCCTGCGTTCCACCTGCCCGTACATCATGTGTATCTCGCCGGTGGGTGAA
GACGCAGGCCAAGGACGAGGAGATTGCAAACGCGAAAGAGCACCGTTCCT
TTGCGCCTGTCACCTCTTTGGAGACCCTCTCTGAGCATGACGCGGCCGAC
ACACCCCGTTCGCTACAGGAGCGGGTGCGTTTGTTCGCAGCCACGAAGGG
AGTGGATTCTCGCCAGCTGAATTTTTTGCTGAACGTGGGCCTGATATCCG
CTGTCGCGGCGCTCGTGTTGGCGAAGGTGGTCACCGTGGATCTGGACGTG
TGGCGCGGCTGGACTCCCGCCGAAATCTTCACACGCATTCCCCTAGACAA
CTGGGACGGGTACATGAACGTGCTGAGCCTGCATCCTGTCTTCGTCAAGG
CCGTGACCAGCGGCTCCGTCTACACCCTGGGGGATGGGGTCGCCCAGCTC
TACGAGGGCAAGACGTTGGGGGAAATCGACCGCGGCCGCGTGGCTCGTTC
CGGTATCGCGGGCTTCGTCGGGCACGGGCCCCTCTCTCACTGGTGGTACG
GAGTGTCGGAGGATTTTTTCGGGTGGCTGGGCTGGGAAGGATGGTGGACG
ACCTTCCCGAAAATCACCGTGGACCAGCTCGTGTGGTCCCCGATCTGGAA
CGGGTGCTACATCTTCCTCCTGGGGGCCATGAAACGGGAGGCGCTGGGCG
AGATCGTGAACACGGTCAAATCTACCTCCTTCTCGCTCATCACCTCCGGT
CTGAAGCTCTGGCCGTTGGCGCATGTGGTCACCTACGGCGTCATTCCCGT
GGAGAACCGGTTGCTGTGGGTAGACCTGGTGGAGATCTTGTGGGTGACGA
TTTTGTCGCGGGAGGCGGCCAACGCGGACGCGGAGAAAGCGGAGGCGATA
GGAGACGTGGCGGTAGAGGAAGCCTCCTCCAAGACGTTGGCCGTGGTGGA
CAGTGAGACGATGCAGGCGCCGAGTGCCCGTGCCGCGGGTGACGACATGG
AGCCTGTGATTTTCATGCCGCTCGCGTCGAATGTCTCTGACCTGGAAACT
GAAGACGGCCAACTACGAGACCATGCAGAACACCACCCCGAGCAGGAGCA
ACAGAGGGCAGTGTCTGTGCACAGAGAGGATGAGTTCGTGTAA

Synonyms

Publications