EWM29375.1, cds1295 (CDS) Nannochloropsis gaditana

Overview
NameEWM29375.1
Unique Namecds1295
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:271053..272345 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29375.1
Productperoxisomal membrane 22 kda (mpv17 pmp22) family protein
Orig transcript idgnl|cribi|Naga_100028g11.3311.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:271053..272345 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|585111903|gb|EWM29375.1| (peroxisomal membrane 22 kda (mpv17 pmp22) family protein [Nannochloropsis gaditana])

HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query:    1 MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCLPLPSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 430
            MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCLPLPSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV
Sbjct:    1 MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCLPLPSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 430          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|553191910|ref|XP_005855482.1| (hypothetical protein NGA_0131200 [Nannochloropsis gaditana CCMP526] >gi|422293584|gb|EKU20884.1| hypothetical protein NGA_0131200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 308.916 bits (790), Expect = 6.830e-102
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:  277 MKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 430
            MKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV
Sbjct:    1 MKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 154          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|219127209|ref|XP_002183832.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404555|gb|EEC44501.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 251.521 bits (641), Expect = 2.606e-78
Identity = 122/221 (55.20%), Postives = 153/221 (69.23%), Query Frame = 0
Query:  126 LLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFF-GWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAE 345
            ++N G I  V  ++L ++ T+D  + RGWT  E+  RIP+D W GY  VL   PV  KA TS +VYT+GD +AQ  +G  +G++DRGR+ RS +AG +GHGPLSH+WY V + FF   L W  WW+ FPK+ VDQ  W PIWN  YI LLG MK E L  I + +K T+  LI SGLKLWPLAH VTYG++PVENRLLWVD VEILWVTIL+  AA A A+
Sbjct:    1 MINTGFIVGVVGVLLYEITTMDATISRGWTSEELAARIPMDVWAGYSQVLENSPVATKAATSATVYTIGDFIAQRTQGAAMGDLDRGRIVRSMLAGLIGHGPLSHFWYNVCDHFFDNVLHWTAWWSFFPKVVVDQTTWGPIWNNTYILLLGLMKLEKLETIWSDMKRTTVPLILSGLKLWPLAHCVTYGLVPVENRLLWVDAVEILWVTILATTAAEAHAD 221          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|298712836|emb|CBJ48801.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 244.202 bits (622), Expect = 8.514e-75
Identity = 128/271 (47.23%), Postives = 162/271 (59.78%), Query Frame = 0
Query:   79 KEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGW-EGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAE 348
            +E    AP      L   D+A  P+     +  +   +  ++ +LN   N G ++ VA   +A V  VD +V RGWT  E   R+PLDNWDGY  +L   PV VKA TSG VY LGD VAQ  EG  L  I+R RV RS IAG + HGPLSH WY V E  F  +GW + WW   PKI  DQL+W P WN  YI  LG + +++   I   + ST+  L+ +G++LWPLAHVVTYG++P ENRLLWVD VEI+WVTILS +AA      AE
Sbjct:    8 EETTDSAPDDPAPILETKDSA-PPKPYTPSILWWTKNREEENNKLNLFANAGFLAGVALFTIAVVFGVDSEVSRGWTIGEYILRVPLDNWDGYSEMLRQSPVQVKACTSGIVYALGDLVAQSMEGTELASIERQRVVRSAIAGLLLHGPLSHVWYNVCEGLFDIVGWNDYWWVPAPKIITDQLLWGPAWNAVYIAFLGVLNKDSSAVIWEAITSTALPLVIAGIRLWPLAHVVTYGLVPKENRLLWVDAVEIIWVTILSSQAAEQARSPAE 277          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|224010840|ref|XP_002294377.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969872|gb|EED88211.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 235.728 bits (600), Expect = 2.030e-72
Identity = 112/196 (57.14%), Postives = 144/196 (73.47%), Query Frame = 0
Query:  142 KVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFF-GWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILS 336
            +V+++D+ + RGW+P EI TRIPLDNW  Y NVL++ P+  KAVTS +VYT+GD +AQ  EG+ +GE+DR RV RS +AG +GHGP+SH WY VSEDFF   L    WW   PK+ VDQ  + PIWN  YI LLG M+ ++  +I + +K T+  LI SGLKLWP  H +TYG+IPVENRLLWVD VEI+WVTIL+
Sbjct:   16 QVLSIDVGITRGWSPEEIATRIPLDNWRSYTNVLNMAPIQTKAVTSATVYTIGDMIAQRTEGRGMGEVDRWRVGRSLMAGLIGHGPMSHVWYHVSEDFFDNTLSLHAWWDFIPKVIVDQTFFGPIWNNSYILLLGLMQLQSPSQIFSDMKRTTIPLIVSGLKLWPFVHCITYGLIPVENRLLWVDAVEIVWVTILA 211          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|397617809|gb|EJK64618.1| (hypothetical protein THAOC_14631 [Thalassiosira oceanica])

HSP 1 Score: 228.024 bits (580), Expect = 1.517e-67
Identity = 119/263 (45.25%), Postives = 168/263 (63.88%), Query Frame = 0
Query:   85 APVTSLETLSEHDAADTPR---SLQERVRL---FAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGW--EGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREA 339
             P  ++  L + + A++P    +  + +RL   +  T  +D    + L+N  ++ +   LV  + ++VDL + RGWTP E+  R+PLDNW GY  +L+  PV  KA+TS SVYT+GD +AQ  +G  +G++DR R+ RS IAG VGHGP+SH WY  SE FF  +      WW   PK+  DQLV+ P+WN  +I L+G M+  + G I + ++ T+  L+ SGLKLWP  H+VTYGVIPVENRLLWVD VEI+WVTIL+  A
Sbjct:   64 GPAATIVGLVKPETAESPTGAATSADALRLGGQYRRTTLLDGVSADSLVNSLVLLSAVTLVAGRFLSVDLGLTRGWTPLEVAERVPLDNWRGYNEILTAAPVQTKALTSASVYTIGDIIAQTRQGSGMGDLDRPRIVRSMIAGLVGHGPMSHLWYRWSEAFFDKVVHLPHAWWDFVPKVCADQLVFGPLWNNTFILLIGFMQLNSPGMIWDEMRRTTVPLLLSGLKLWPFVHIVTYGVIPVENRLLWVDAVEIVWVTILASVA 326          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|1072221700|gb|OEU06482.1| (hypothetical protein FRACYDRAFT_200762 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 221.09 bits (562), Expect = 3.716e-66
Identity = 114/221 (51.58%), Postives = 143/221 (64.71%), Query Frame = 0
Query:  122 QLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGW--EGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAA 340
              N +LN  +I A+A   L  +  +D  + RGW+  E   RIP D W+ Y +VLS HP+  KAVTS +VYT+GD +AQ  EG ++ EID  R  RS +AG +GHGPLSH WY VS++ F  +       W T  KI +DQ  W PIWN  YI LLG MK +   +I   +K T+  L+ SGLKLWPLAH VTYG+IP ENRLLWVDLVEI+WVTIL+  AA
Sbjct:    2 NFNAILNTAIIVAIAFGALNHITAIDTSIMRGWSLEETAIRIPHDIWNSYSSVLSTHPIQTKAVTSATVYTIGDLIAQRTEGSSISEIDLLRTLRSLLAGLIGHGPLSHIWYNVSDELFTNVLHLPTNIWGTGVKIVIDQTTWGPIWNNTYILLLGIMKFQKPKDIGAEMKRTTIPLLKSGLKLWPLAHCVTYGLIPKENRLLWVDLVEIIWVTILASTAA 222          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|1012222900|ref|XP_015936232.1| (uncharacterized protein LOC107462181 isoform X2 [Arachis duranensis])

HSP 1 Score: 221.09 bits (562), Expect = 9.777e-65
Identity = 125/316 (39.56%), Postives = 170/316 (53.80%), Query Frame = 0
Query:   50 PSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEA-IGDVAVEEASSKTLA 364
            P+  P     C   R+  +  KD E+A  K+++        E  S  D AD  R L   +                  N  L+       ++K++T+D D W GWT  EI   +P  NW  Y   L  +PV  K   SG VY++GD +AQ YEGK L E DR R+ RSG+AGF  HG LSH++Y + E  F    ++ WW    K+  DQ VW+ IWN  Y  +LG ++ E++  I   +KST + ++T+G KLWP AH++TYGVIP+E RLLWVD VE++WVTILS        EK+EA I D A  E  S TL+
Sbjct:   79 PTLSPQLPKRC---RFATSVTKDREVAVVKDNQL------EEKRSRFDDADPDRLLSRAI------------------NTALVLGFGTFAVSKLLTIDHDYWHGWTLYEILRYVPEHNWVAYEQALKSNPVLAKMAISGVVYSIGDWIAQCYEGKPLFEFDRTRLFRSGLAGFTLHGSLSHYYYQLCESLF---PFQEWWVVPAKVAFDQTVWAAIWNSIYFVVLGLLRFESINNIYGELKSTFWPMLTAGWKLWPFAHLITYGVIPLEQRLLWVDCVELIWVTILS----TYSNEKSEARISDGASSETKSSTLS 360          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|1012222896|ref|XP_015936231.1| (uncharacterized protein LOC107462181 isoform X1 [Arachis duranensis])

HSP 1 Score: 221.476 bits (563), Expect = 1.470e-64
Identity = 125/316 (39.56%), Postives = 170/316 (53.80%), Query Frame = 0
Query:   50 PSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEA-IGDVAVEEASSKTLA 364
            P+  P     C   R+  +  KD E+A  K+++        E  S  D AD  R L   +                  N  L+       ++K++T+D D W GWT  EI   +P  NW  Y   L  +PV  K   SG VY++GD +AQ YEGK L E DR R+ RSG+AGF  HG LSH++Y + E  F    ++ WW    K+  DQ VW+ IWN  Y  +LG ++ E++  I   +KST + ++T+G KLWP AH++TYGVIP+E RLLWVD VE++WVTILS        EK+EA I D A  E  S TL+
Sbjct:   79 PTLSPQLPKRC---RFATSVTKDREVAVVKDNQL------EEKRSRFDDADPDRLLSRAI------------------NTALVLGFGTFAVSKLLTIDHDYWHGWTLYEILRYVPEHNWVAYEQALKSNPVLAKMAISGVVYSIGDWIAQCYEGKPLFEFDRTRLFRSGLAGFTLHGSLSHYYYQLCESLF---PFQEWWVVPAKVAFDQTVWAAIWNSIYFVVLGLLRFESINNIYGELKSTFWPMLTAGWKLWPFAHLITYGVIPLEQRLLWVDCVELIWVTILS----TYSNEKSEARISDGASSETKSSTLS 360          
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|731329468|ref|XP_010675607.1| (PREDICTED: protein SYM1 [Beta vulgaris subsp. vulgaris] >gi|870861752|gb|KMT13022.1| hypothetical protein BVRB_4g087370 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 218.394 bits (555), Expect = 5.233e-64
Identity = 112/236 (47.46%), Postives = 148/236 (62.71%), Query Frame = 0
Query:  127 LNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKT 362
            +N  ++ A     L K++T+D D W GWT  EI    P  NW  Y  +L  +PVF K V SG VY++GD +AQ YEGK L + DR R+ RSG+AGF  HG LSH++Y V E  F    ++GWW    K+  DQ +WS IWN  Y  +LG M+ E+   I   +K+T + L+T+G KLWP AH+VTYG+IPVE RLLWVD VE++WVTILS        EK+EA     + EASS++
Sbjct:  105 INATILLAAGTFALTKLLTIDHDYWHGWTVYEILRYAPQHNWSAYEELLKTNPVFAKMVISGVVYSVGDWIAQCYEGKPLFDFDRTRMVRSGLAGFALHGSLSHYYYEVCEALF---PFQGWWVVPLKVAFDQTIWSAIWNSIYFIVLGLMRLESPISIFKELKATFWPLLTAGWKLWPFAHLVTYGLIPVEQRLLWVDCVELIWVTILS----TYSNEKSEA----RLSEASSES 329          
The following BLAST results are available for this feature:
BLAST of EWM29375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111903|gb|EWM29375.1|0.000e+0100.00peroxisomal membrane 22 kda (mpv17 pmp22) family p... [more]
gi|553191910|ref|XP_005855482.1|6.830e-102100.00hypothetical protein NGA_0131200 [Nannochloropsis ... [more]
gi|219127209|ref|XP_002183832.1|2.606e-7855.20predicted protein, partial [Phaeodactylum tricornu... [more]
gi|298712836|emb|CBJ48801.1|8.514e-7547.23conserved unknown protein [Ectocarpus siliculosus][more]
gi|224010840|ref|XP_002294377.1|2.030e-7257.14predicted protein, partial [Thalassiosira pseudona... [more]
gi|397617809|gb|EJK64618.1|1.517e-6745.25hypothetical protein THAOC_14631 [Thalassiosira oc... [more]
gi|1072221700|gb|OEU06482.1|3.716e-6651.58hypothetical protein FRACYDRAFT_200762 [Fragilario... [more]
gi|1012222900|ref|XP_015936232.1|9.777e-6539.56uncharacterized protein LOC107462181 isoform X2 [A... [more]
gi|1012222896|ref|XP_015936231.1|1.470e-6439.56uncharacterized protein LOC107462181 isoform X1 [A... [more]
gi|731329468|ref|XP_010675607.1|5.233e-6447.46PREDICTED: protein SYM1 [Beta vulgaris subsp. vulg... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1297rna1297Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications