EWM29375.1, cds1295 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|585111903|gb|EWM29375.1| (peroxisomal membrane 22 kda (mpv17 pmp22) family protein [Nannochloropsis gaditana]) HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0 Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query: 1 MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCLPLPSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 430
MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCLPLPSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV
Sbjct: 1 MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCLPLPSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 430
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|553191910|ref|XP_005855482.1| (hypothetical protein NGA_0131200 [Nannochloropsis gaditana CCMP526] >gi|422293584|gb|EKU20884.1| hypothetical protein NGA_0131200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 308.916 bits (790), Expect = 6.830e-102 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query: 277 MKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 430
MKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV
Sbjct: 1 MKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPVIFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDEFV 154
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|219127209|ref|XP_002183832.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404555|gb|EEC44501.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 251.521 bits (641), Expect = 2.606e-78 Identity = 122/221 (55.20%), Postives = 153/221 (69.23%), Query Frame = 0
Query: 126 LLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFF-GWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAE 345
++N G I V ++L ++ T+D + RGWT E+ RIP+D W GY VL PV KA TS +VYT+GD +AQ +G +G++DRGR+ RS +AG +GHGPLSH+WY V + FF L W WW+ FPK+ VDQ W PIWN YI LLG MK E L I + +K T+ LI SGLKLWPLAH VTYG++PVENRLLWVD VEILWVTIL+ AA A A+
Sbjct: 1 MINTGFIVGVVGVLLYEITTMDATISRGWTSEELAARIPMDVWAGYSQVLENSPVATKAATSATVYTIGDFIAQRTQGAAMGDLDRGRIVRSMLAGLIGHGPLSHFWYNVCDHFFDNVLHWTAWWSFFPKVVVDQTTWGPIWNNTYILLLGLMKLEKLETIWSDMKRTTVPLILSGLKLWPLAHCVTYGLVPVENRLLWVDAVEILWVTILATTAAEAHAD 221
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|298712836|emb|CBJ48801.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 244.202 bits (622), Expect = 8.514e-75 Identity = 128/271 (47.23%), Postives = 162/271 (59.78%), Query Frame = 0
Query: 79 KEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGW-EGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAE 348
+E AP L D+A P+ + + + ++ +LN N G ++ VA +A V VD +V RGWT E R+PLDNWDGY +L PV VKA TSG VY LGD VAQ EG L I+R RV RS IAG + HGPLSH WY V E F +GW + WW PKI DQL+W P WN YI LG + +++ I + ST+ L+ +G++LWPLAHVVTYG++P ENRLLWVD VEI+WVTILS +AA AE
Sbjct: 8 EETTDSAPDDPAPILETKDSA-PPKPYTPSILWWTKNREEENNKLNLFANAGFLAGVALFTIAVVFGVDSEVSRGWTIGEYILRVPLDNWDGYSEMLRQSPVQVKACTSGIVYALGDLVAQSMEGTELASIERQRVVRSAIAGLLLHGPLSHVWYNVCEGLFDIVGWNDYWWVPAPKIITDQLLWGPAWNAVYIAFLGVLNKDSSAVIWEAITSTALPLVIAGIRLWPLAHVVTYGLVPKENRLLWVDAVEIIWVTILSSQAAEQARSPAE 277
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|224010840|ref|XP_002294377.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969872|gb|EED88211.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 235.728 bits (600), Expect = 2.030e-72 Identity = 112/196 (57.14%), Postives = 144/196 (73.47%), Query Frame = 0
Query: 142 KVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFF-GWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILS 336
+V+++D+ + RGW+P EI TRIPLDNW Y NVL++ P+ KAVTS +VYT+GD +AQ EG+ +GE+DR RV RS +AG +GHGP+SH WY VSEDFF L WW PK+ VDQ + PIWN YI LLG M+ ++ +I + +K T+ LI SGLKLWP H +TYG+IPVENRLLWVD VEI+WVTIL+
Sbjct: 16 QVLSIDVGITRGWSPEEIATRIPLDNWRSYTNVLNMAPIQTKAVTSATVYTIGDMIAQRTEGRGMGEVDRWRVGRSLMAGLIGHGPMSHVWYHVSEDFFDNTLSLHAWWDFIPKVIVDQTFFGPIWNNSYILLLGLMQLQSPSQIFSDMKRTTIPLIVSGLKLWPFVHCITYGLIPVENRLLWVDAVEIVWVTILA 211
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|397617809|gb|EJK64618.1| (hypothetical protein THAOC_14631 [Thalassiosira oceanica]) HSP 1 Score: 228.024 bits (580), Expect = 1.517e-67 Identity = 119/263 (45.25%), Postives = 168/263 (63.88%), Query Frame = 0
Query: 85 APVTSLETLSEHDAADTPR---SLQERVRL---FAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGW--EGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREA 339
P ++ L + + A++P + + +RL + T +D + L+N ++ + LV + ++VDL + RGWTP E+ R+PLDNW GY +L+ PV KA+TS SVYT+GD +AQ +G +G++DR R+ RS IAG VGHGP+SH WY SE FF + WW PK+ DQLV+ P+WN +I L+G M+ + G I + ++ T+ L+ SGLKLWP H+VTYGVIPVENRLLWVD VEI+WVTIL+ A
Sbjct: 64 GPAATIVGLVKPETAESPTGAATSADALRLGGQYRRTTLLDGVSADSLVNSLVLLSAVTLVAGRFLSVDLGLTRGWTPLEVAERVPLDNWRGYNEILTAAPVQTKALTSASVYTIGDIIAQTRQGSGMGDLDRPRIVRSMIAGLVGHGPMSHLWYRWSEAFFDKVVHLPHAWWDFVPKVCADQLVFGPLWNNTFILLIGFMQLNSPGMIWDEMRRTTVPLLLSGLKLWPFVHIVTYGVIPVENRLLWVDAVEIVWVTILASVA 326
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|1072221700|gb|OEU06482.1| (hypothetical protein FRACYDRAFT_200762 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 221.09 bits (562), Expect = 3.716e-66 Identity = 114/221 (51.58%), Postives = 143/221 (64.71%), Query Frame = 0
Query: 122 QLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGW--EGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAA 340
N +LN +I A+A L + +D + RGW+ E RIP D W+ Y +VLS HP+ KAVTS +VYT+GD +AQ EG ++ EID R RS +AG +GHGPLSH WY VS++ F + W T KI +DQ W PIWN YI LLG MK + +I +K T+ L+ SGLKLWPLAH VTYG+IP ENRLLWVDLVEI+WVTIL+ AA
Sbjct: 2 NFNAILNTAIIVAIAFGALNHITAIDTSIMRGWSLEETAIRIPHDIWNSYSSVLSTHPIQTKAVTSATVYTIGDLIAQRTEGSSISEIDLLRTLRSLLAGLIGHGPLSHIWYNVSDELFTNVLHLPTNIWGTGVKIVIDQTTWGPIWNNTYILLLGIMKFQKPKDIGAEMKRTTIPLLKSGLKLWPLAHCVTYGLIPKENRLLWVDLVEIIWVTILASTAA 222
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|1012222900|ref|XP_015936232.1| (uncharacterized protein LOC107462181 isoform X2 [Arachis duranensis]) HSP 1 Score: 221.09 bits (562), Expect = 9.777e-65 Identity = 125/316 (39.56%), Postives = 170/316 (53.80%), Query Frame = 0
Query: 50 PSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEA-IGDVAVEEASSKTLA 364
P+ P C R+ + KD E+A K+++ E S D AD R L + N L+ ++K++T+D D W GWT EI +P NW Y L +PV K SG VY++GD +AQ YEGK L E DR R+ RSG+AGF HG LSH++Y + E F ++ WW K+ DQ VW+ IWN Y +LG ++ E++ I +KST + ++T+G KLWP AH++TYGVIP+E RLLWVD VE++WVTILS EK+EA I D A E S TL+
Sbjct: 79 PTLSPQLPKRC---RFATSVTKDREVAVVKDNQL------EEKRSRFDDADPDRLLSRAI------------------NTALVLGFGTFAVSKLLTIDHDYWHGWTLYEILRYVPEHNWVAYEQALKSNPVLAKMAISGVVYSIGDWIAQCYEGKPLFEFDRTRLFRSGLAGFTLHGSLSHYYYQLCESLF---PFQEWWVVPAKVAFDQTVWAAIWNSIYFVVLGLLRFESINNIYGELKSTFWPMLTAGWKLWPFAHLITYGVIPLEQRLLWVDCVELIWVTILS----TYSNEKSEARISDGASSETKSSTLS 360
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|1012222896|ref|XP_015936231.1| (uncharacterized protein LOC107462181 isoform X1 [Arachis duranensis]) HSP 1 Score: 221.476 bits (563), Expect = 1.470e-64 Identity = 125/316 (39.56%), Postives = 170/316 (53.80%), Query Frame = 0
Query: 50 PSCVPPARTSCVSRRWVKTQAKDEEIANAKEHRSFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEA-IGDVAVEEASSKTLA 364
P+ P C R+ + KD E+A K+++ E S D AD R L + N L+ ++K++T+D D W GWT EI +P NW Y L +PV K SG VY++GD +AQ YEGK L E DR R+ RSG+AGF HG LSH++Y + E F ++ WW K+ DQ VW+ IWN Y +LG ++ E++ I +KST + ++T+G KLWP AH++TYGVIP+E RLLWVD VE++WVTILS EK+EA I D A E S TL+
Sbjct: 79 PTLSPQLPKRC---RFATSVTKDREVAVVKDNQL------EEKRSRFDDADPDRLLSRAI------------------NTALVLGFGTFAVSKLLTIDHDYWHGWTLYEILRYVPEHNWVAYEQALKSNPVLAKMAISGVVYSIGDWIAQCYEGKPLFEFDRTRLFRSGLAGFTLHGSLSHYYYQLCESLF---PFQEWWVVPAKVAFDQTVWAAIWNSIYFVVLGLLRFESINNIYGELKSTFWPMLTAGWKLWPFAHLITYGVIPLEQRLLWVDCVELIWVTILS----TYSNEKSEARISDGASSETKSSTLS 360
BLAST of EWM29375.1 vs. NCBI_GenBank
Match: gi|731329468|ref|XP_010675607.1| (PREDICTED: protein SYM1 [Beta vulgaris subsp. vulgaris] >gi|870861752|gb|KMT13022.1| hypothetical protein BVRB_4g087370 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 218.394 bits (555), Expect = 5.233e-64 Identity = 112/236 (47.46%), Postives = 148/236 (62.71%), Query Frame = 0
Query: 127 LNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKT 362
+N ++ A L K++T+D D W GWT EI P NW Y +L +PVF K V SG VY++GD +AQ YEGK L + DR R+ RSG+AGF HG LSH++Y V E F ++GWW K+ DQ +WS IWN Y +LG M+ E+ I +K+T + L+T+G KLWP AH+VTYG+IPVE RLLWVD VE++WVTILS EK+EA + EASS++
Sbjct: 105 INATILLAAGTFALTKLLTIDHDYWHGWTVYEILRYAPQHNWSAYEELLKTNPVFAKMVISGVVYSVGDWIAQCYEGKPLFDFDRTRMVRSGLAGFALHGSLSHYYYEVCEALF---PFQGWWVVPLKVAFDQTIWSAIWNSIYFIVLGLMRLESPISIFKELKATFWPLLTAGWKLWPFAHLVTYGLIPVEQRLLWVDCVELIWVTILS----TYSNEKSEA----RLSEASSES 329 The following BLAST results are available for this feature:
BLAST of EWM29375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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