rna1294, rna1294 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1294
Unique Name	rna1294
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	494
Alignment location	CM002457.1:263609..265309 +

Link to JBrowse

Properties


Property Name	Value
Product	tubulin-tyrsoine ligase
Orig transcript id	gnl\|cribi\|Naga_100028g8.3286.mrna
Orig protein id	gnl\|cribi\|Naga_100028g8.3286
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:263609..265309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g8	gene1248	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1294	rna1294-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29350.1	cds1292	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:263609..265309+
coding sequence from alignment at CM002457.1:263609..265309+

mRNA sequence

>rna1294 ID=rna1294|Name=rna1294|organism=Nannochloropsis gaditana|type=mRNA|length=494bp
TCACGAATTTCTCAGGAGATCCACCATGGCCCCAGCTAGTGCTATTGCTG
TATTAGATAGAACGACCCTTGGACAGAAGGCCGTCTTGTACCGTGAACCT
ATCGACTCTGCCTGTTTGAAGGACAAGCACCAAAATTGGCGCGGTGACGC
GCACATTCCCGTGCCCCTCCTGCATGAGGTGAAGGACACTCTATCCACGT
CAACAGACTTGCCCAAGGCTATGACTCAGCCGCCTATGATTGAATGGCCG
TGTCTTCGCACTGCAAATAAAGGCAGACTACAAAAACGACTTACTTGTGT
GCGAAGGCCAAAGTGGAGAGCATGAGCGCCTTCACTAGTGCGTACTATGT
GCTACCTGGGAGATCGCGTGCTTCTCGAGCTTAGCCTCGAGCTTGACCAG
ACCTACAATGCCCGTCTGGTCCCCTATATTTTGTGATGCATCGATCCCCA
TTCCCATCACTCACCACTCCCCGAGCCATTCCGAGTTTCAAACA

protein sequence of rna1294

>rna1294-protein ID=rna1294-protein|Name=rna1294|organism=Nannochloropsis gaditana|type=polypeptide|length=468bp
MSTRENSIRPSSSCQQLHPTHLIYRITGAAAQARIVPLLQERAEVHWIAG
RCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKA
YFSHILALVSSQNQDIPVLETAVVRAMDAQAWLDARRRQLRTVQNANYTV
FTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQ
RYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIY
QHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPGYPGQLPIDL
ARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAP
EDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVM
PFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRW
AMHMRACRNSVKTAICEK

mRNA from alignment at CM002457.1:263609..265309+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1294 ID=rna1294|Name=rna1294|organism=Nannochloropsis gaditana|type=mRNA|length=1701bp|location=Sequence derived from alignment at CM002457.1:263609..265309+ (Nannochloropsis gaditana)
ATGTCAACAAGAGAAAACAGCAtccgtccttcctcatcatgcCAGCAATT
GCATCCAACACATTTGATATATCGCATCACTGGCGCTGCGGCGCAAGCGC
GGATTGTTCCCTTGCTGCAGGAGAGGGCTGAAGTGCACTGGTGAGCatcg
cgaaggagggaggttggtgcATCGCGAAATGTTTCCTTTATAACCCGAGC
AAATCACGAATTCCATCTTTCCCAAAACGAGAAATGACTCAAACGTTTTT
GTTCGTTTCGTTTTCGACATCGCAGGATTGCTGGTAGATGTCAAAATGCA
TGTAATCAGGCTGATCCTCCTGTCCCCCTTGATTTCGTCTGGGAGACCCA
TGTCGCGCGTCGGGATAAGCCCCTTCATGATTGTGCCCGTGTTCTCAATC
GTCTTTCCAACACTGTTATCCTGGAAAATAAGGCATACTTCTCTCACATT
CTAGCGCTTGTATCCAGCCAAAATCAGGACATACCCGTTCTGGAGACCGC
AGTAGTTCGAGCCATGGATGCCCAAGCCTGGCTTGATGCACGCCGAAGAC
AATTACGGACAGTACAAAACGCAAATTACACCGTATTTACAGATTGCAcc
gaggacgcggaggaatGGTGGATTCTTAAGGCCGCTGGCGCTaatggcgg
aggagacgttCATGTATTGCCCCCGGCCTGCACTCATGTCCCCGCGTGTA
TCGCCTTGCGACCTCTAGACTCGTACGTCGTCCAACGCTACATCACCAGA
CCTTTATTGCTAGAAAAAAAATATAAATTTCACTATCGGGTCTACGCTTT
GTTGCGGATgacaggggtggaggagaccggACGCACGTCTGTGGACAGAG
AAGCACGCAGGGCACGCTTCCAGCCTTGGATATATCAGCATGGCTTTATC
CTTAGGGCCTCAGAAAGGTACCATCATGCCACAAAATGCGGATCGGCTAA
CGAGATTGACGCGGCTGCCCATTTAACGAATTTGTCGTTGAACAAGCACT
GTCCTGGGTACCCTGGTCAGCTTCCCATCGACCTGGCACGGGCCCCTCGT
ACCTTTGGGTGCATGAAAGCTCATTGGGCAGCAGTCGTGCGGGCAGCAGC
ACCTTTTTTGAGGGCACAGGTGCGCCACTGAATCTTGTCAGGCACTTTGA
AGCCCCAAAGGGACGCAAAAATGACGGAGACGATAAATCGCATGCACGTG
CCTGTCCGTACCCCGTCTTGCACAGCTTTACAagctcactcactcactca
tTGTGCCACATATCTCACCATTTGACAGGCATCCTCAGGCCATTTTGAGT
TGTTTGGCCTGGATTATCTGCCAGTCGAAGCGGCGTGTGCGCCAGAGGAC
ATGATGCACCTCGACAAGTTTGACAGCATGTATCTCATGGAAATTAACCG
CCTGCCTGGCCTGCAAAGCTCCCGACAGAATTCtgccgacgaggatgagc
TATATGATTGTATGATACGAGAGCTTCTGGACTTGTGCGTGATGCCTTTC
TtgtcggggacgggggcgaaAAACGACCACGAATCGAAGCAAGGTGGATG
GAGTGAGGTTGTAATTAAAGACGTTGACGAAAATATGTTCGTAGACTTGG
CGAGCCCCGGTGATAAAGAAATCCACCACAACGTCCTTCGATGGGCTATG
CATATGCGAGCGTGTCGAAATTCTGTTAAAACAGCCATTTGtgaaaaatg
a

Coding sequence (CDS) from alignment at CM002457.1:263609..265309+

>rna1294 ID=rna1294|Name=rna1294|organism=Nannochloropsis gaditana|type=CDS|length=4221bp|location=Sequence derived from alignment at CM002457.1:263609..265309+ (Nannochloropsis gaditana)
ATGTCAACAAGAGAAAACAGCAtccgtccttcctcatcatgcCAGCAATT
GCATCCAACACATTTGATATATCGCATCACTGGCGCTGCGGCGCAAGCGC
GGATTGTTCCCTTGCTGCAGGAGAGGGCTGAAGTGCACTGGATTGCTGGT
AGATGTCAAAATGCATGTAATCAGGCTGATCCTCCTGTCCCCCTTGATTT
CGTCTGGGAGACCCATGTCGCGCGTCGGGATAAGCCCCTTCATGATTGTG
CCCGTGTTCTCAATCGTCTTTCCAACACTGTTATCCTGGAAAATAAGGCA
TACTTCTCTCACATTCTAGCGCTTGTATCCAGCCAAAATCAGGACATACC
CGTTCTGGAGACCGCAGTAGTTCGAGCCATGGATGCCCAAGCCTGGCTTG
ATGCACGCCGAAGACAATTACGGACAGTACAAAACGCAAATTACACCGTA
TTTACAGATTGCAccgaggacgcggaggaatGGTGGATTCTTAAGGCCGC
TGGCGCTaatggcggaggagacgttCATGTATTGCCCCCGGCCTGCACTC
ATGTCCCCGCGTGTATCGCCTTGCGACCTCTAGACTCGTACGTCGTCCAA
CGCTACATCACCAGACCTTTATTGCTAGAAAAAAAATATAAATTTCACTA
TCGGGTCTACGCTTTGTTGCGGATgacaggggtggaggagaccggACGCA
CGTCTGTGGACAGAGAAGCACGCAGGGCACGCTTCCAGCCTTGGATATAT
CAGCATGGCTTTATCCTTAGGGCCTCAGAAAGGTACCATCATGCCACAAA
ATGCGGATCGGCTAACGAGATTGACGCGGCTGCCCATTTAACGAATTTGT
CGTTGAACAAGCACTGTCCTGGGTACCCTGGTCAGCTTCCCATCGACCTG
GCACGGGCCCCTCGTACCTTTGGGTGCATGAAAGCTCATTGGGCAGCAGT
CGTGCGGGCAGCAGCACCTTTTTTGAGGGCACAGGCATCCTCAGGCCATT
TTGAGTTGTTTGGCCTGGATTATCTGCCAGTCGAAGCGGCGTGTGCGCCA
GAGGACATGATGCACCTCGACAAGTTTGACAGCATGTATCTCATGGAAAT
TAACCGCCTGCCTGGCCTGCAAAGCTCCCGACAGAATTCtgccgacgagg
atgagcTATATGATTGTATGATACGAGAGCTTCTGGACTTGTGCGTGATG
CCTTTCTtgtcggggacgggggcgaaAAACGACCACGAATCGAAGCAAGG
TGGATGGAGTGAGGTTGTAATTAAAGACGTTGACGAAAATATGTTCGTAG
ACTTGGCGAGCCCCGGTGATAAAGAAATCCACCACAACGTCCTTCGATGG
GCTATGCATATGCGAGCGTGTCGAAATTCTGTTAAAACAGCCATTTGtga
aaaatgaATGTCAACAAGAGAAAACAGCAtccgtccttcctcatcatgcC
AGCAATTGCATCCAACACATTTGATATATCGCATCACTGGCGCTGCGGCG
CAAGCGCGGATTGTTCCCTTGCTGCAGGAGAGGGCTGAAGTGCACTGGAT
TGCTGGTAGATGTCAAAATGCATGTAATCAGGCTGATCCTCCTGTCCCCC
TTGATTTCGTCTGGGAGACCCATGTCGCGCGTCGGGATAAGCCCCTTCAT
GATTGTGCCCGTGTTCTCAATCGTCTTTCCAACACTGTTATCCTGGAAAA
TAAGGCATACTTCTCTCACATTCTAGCGCTTGTATCCAGCCAAAATCAGG
ACATACCCGTTCTGGAGACCGCAGTAGTTCGAGCCATGGATGCCCAAGCC
TGGCTTGATGCACGCCGAAGACAATTACGGACAGTACAAAACGCAAATTA
CACCGTATTTACAGATTGCAccgaggacgcggaggaatGGTGGATTCTTA
AGGCCGCTGGCGCTaatggcggaggagacgttCATGTATTGCCCCCGGCC
TGCACTCATGTCCCCGCGTGTATCGCCTTGCGACCTCTAGACTCGTACGT
CGTCCAACGCTACATCACCAGACCTTTATTGCTAGAAAAAAAATATAAAT
TTCACTATCGGGTCTACGCTTTGTTGCGGATgacaggggtggaggagacc
ggACGCACGTCTGTGGACAGAGAAGCACGCAGGGCACGCTTCCAGCCTTG
GATATATCAGCATGGCTTTATCCTTAGGGCCTCAGAAAGGTACCATCATG
CCACAAAATGCGGATCGGCTAACGAGATTGACGCGGCTGCCCATTTAACG
AATTTGTCGTTGAACAAGCACTGTCCTGGGTACCCTGGTCAGCTTCCCAT
CGACCTGGCACGGGCCCCTCGTACCTTTGGGTGCATGAAAGCTCATTGGG
CAGCAGTCGTGCGGGCAGCAGCACCTTTTTTGAGGGCACAGGCATCCTCA
GGCCATTTTGAGTTGTTTGGCCTGGATTATCTGCCAGTCGAAGCGGCGTG
TGCGCCAGAGGACATGATGCACCTCGACAAGTTTGACAGCATGTATCTCA
TGGAAATTAACCGCCTGCCTGGCCTGCAAAGCTCCCGACAGAATTCtgcc
gacgaggatgagcTATATGATTGTATGATACGAGAGCTTCTGGACTTGTG
CGTGATGCCTTTCTtgtcggggacgggggcgaaAAACGACCACGAATCGA
AGCAAGGTGGATGGAGTGAGGTTGTAATTAAAGACGTTGACGAAAATATG
TTCGTAGACTTGGCGAGCCCCGGTGATAAAGAAATCCACCACAACGTCCT
TCGATGGGCTATGCATATGCGAGCGTGTCGAAATTCTGTTAAAACAGCCA
TTTGtgaaaaatgaATGTCAACAAGAGAAAACAGCAtccgtccttcctca
tcatgcCAGCAATTGCATCCAACACATTTGATATATCGCATCACTGGCGC
TGCGGCGCAAGCGCGGATTGTTCCCTTGCTGCAGGAGAGGGCTGAAGTGC
ACTGGATTGCTGGTAGATGTCAAAATGCATGTAATCAGGCTGATCCTCCT
GTCCCCCTTGATTTCGTCTGGGAGACCCATGTCGCGCGTCGGGATAAGCC
CCTTCATGATTGTGCCCGTGTTCTCAATCGTCTTTCCAACACTGTTATCC
TGGAAAATAAGGCATACTTCTCTCACATTCTAGCGCTTGTATCCAGCCAA
AATCAGGACATACCCGTTCTGGAGACCGCAGTAGTTCGAGCCATGGATGC
CCAAGCCTGGCTTGATGCACGCCGAAGACAATTACGGACAGTACAAAACG
CAAATTACACCGTATTTACAGATTGCAccgaggacgcggaggaatGGTGG
ATTCTTAAGGCCGCTGGCGCTaatggcggaggagacgttCATGTATTGCC
CCCGGCCTGCACTCATGTCCCCGCGTGTATCGCCTTGCGACCTCTAGACT
CGTACGTCGTCCAACGCTACATCACCAGACCTTTATTGCTAGAAAAAAAA
TATAAATTTCACTATCGGGTCTACGCTTTGTTGCGGATgacaggggtgga
ggagaccggACGCACGTCTGTGGACAGAGAAGCACGCAGGGCACGCTTCC
AGCCTTGGATATATCAGCATGGCTTTATCCTTAGGGCCTCAGAAAGGTAC
CATCATGCCACAAAATGCGGATCGGCTAACGAGATTGACGCGGCTGCCCA
TTTAACGAATTTGTCGTTGAACAAGCACTGTCCTGGGTACCCTGGTCAGC
TTCCCATCGACCTGGCACGGGCCCCTCGTACCTTTGGGTGCATGAAAGCT
CATTGGGCAGCAGTCGTGCGGGCAGCAGCACCTTTTTTGAGGGCACAGGC
ATCCTCAGGCCATTTTGAGTTGTTTGGCCTGGATTATCTGCCAGTCGAAG
CGGCGTGTGCGCCAGAGGACATGATGCACCTCGACAAGTTTGACAGCATG
TATCTCATGGAAATTAACCGCCTGCCTGGCCTGCAAAGCTCCCGACAGAA
TTCtgccgacgaggatgagcTATATGATTGTATGATACGAGAGCTTCTGG
ACTTGTGCGTGATGCCTTTCTtgtcggggacgggggcgaaAAACGACCAC
GAATCGAAGCAAGGTGGATGGAGTGAGGTTGTAATTAAAGACGTTGACGA
AAATATGTTCGTAGACTTGGCGAGCCCCGGTGATAAAGAAATCCACCACA
ACGTCCTTCGATGGGCTATGCATATGCGAGCGTGTCGAAATTCTGTTAAA
ACAGCCATTTGtgaaaaatga

Synonyms

Publications