EWM29350.1, cds1292 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|585111878|gb|EWM29350.1| (tubulin-tyrsoine ligase [Nannochloropsis gaditana]) HSP 1 Score: 979.548 bits (2531), Expect = 0.000e+0 Identity = 468/468 (100.00%), Postives = 468/468 (100.00%), Query Frame = 0
Query: 1 MSTRENSIRPSSSCQQLHPTHLIYRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMDAQAWLDARRRQLRTVQNANYTVFTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPGYPGQLPIDLARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRWAMHMRACRNSVKTAICEK 468
MSTRENSIRPSSSCQQLHPTHLIYRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMDAQAWLDARRRQLRTVQNANYTVFTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPGYPGQLPIDLARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRWAMHMRACRNSVKTAICEK
Sbjct: 1 MSTRENSIRPSSSCQQLHPTHLIYRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMDAQAWLDARRRQLRTVQNANYTVFTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPGYPGQLPIDLARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRWAMHMRACRNSVKTAICEK 468
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|299473039|emb|CBN77432.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 202.216 bits (513), Expect = 1.576e-55 Identity = 159/501 (31.74%), Postives = 231/501 (46.11%), Query Frame = 0
Query: 18 HPTHLIYRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMDAQA-WLDARRRQ----------LRTVQNANY-----------------TVFTDCTEDAE----------EWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYH--------HATKCGS-------ANEIDAAAHLTNLSLNKHCPGYPGQLPIDLARAPRTFGC----MKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRWAMHMRACRNSV 461
PT L +R+TGA++ AR+ PLL + + + D V +DFVWET V ++ + H ARVLNRLS +LE+KA + L+++ P LE+ V +A A W R ++ + + A Y + T+ T+++E +WW +KAAG NGG D+ VL + AL +SYV+QRY+ RP+L + + KFH+R YALLR A W+Y+ +IL AS Y + G+ A D H++NL++NKH G+PGQ+P DL P +G M ++V AA PF++ QA+ HFE GLD + D ++LME NRLPGLQSS+QN E+E+YD M+ +L+ L V+P L+G S + G EV A E NV+R+A R+CR
Sbjct: 64 QPT-LTFRVTGASSVARLEPLLLGPGGRNQRPTIWSRSLDSGDDGVRVDFVWETTVTKQQQRRHRDARVLNRLSGAQVLEDKANLVLLQRLMTA-----PTLESYAVNGRNAVARWAQQRFKEQNLPRDRPPPPPSTREAGYPHDDQFLARKRALVQGTSAATETTQESEAVGNGHAGEEDWWCVKAAGGNGGLDIWVLHKGNWKM-VTEALSEHESYVIQRYVARPMLWQGR-KFHFRAYALLR------------------ADMSAWLYRTAYILSASRPYSLGGNDSRDDGVRVGAGVADMHRAAFADEFVHISNLAVNKHTEGHPGQVPCDL---PSEYGALWPKMLELLGSLVDAATPFMQHQANPNHFEFLGLDII-------------ADSAGGVWLMEANRLPGLQSSKQNLEKENEVYDGMMLDLIRLLVLPPLTGC-------SPEQGLFEVAATPASG------ARAPSTETWRNVMRFAAFKRSCRTKT 509
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|553179920|ref|XP_005852787.1| (hypothetical protein NGA_0131402, partial [Nannochloropsis gaditana CCMP526] >gi|553191917|ref|XP_005855484.1| hypothetical protein NGA_0131401, partial [Nannochloropsis gaditana CCMP526] >gi|422293586|gb|EKU20886.1| hypothetical protein NGA_0131401, partial [Nannochloropsis gaditana CCMP526] >gi|422295748|gb|EKU23047.1| hypothetical protein NGA_0131402, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 123.635 bits (309), Expect = 1.989e-30 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0
Query: 330 SSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYD 388
+GHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYD
Sbjct: 58 GTGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYD 116 HSP 2 Score: 99.3673 bits (246), Expect = 1.908e-21 Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 0
Query: 154 CTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYAL 222
CTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDS + E H+ ++ L
Sbjct: 1 CTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSSLGSSRAGSSTFFEGTG--HFELFGL 67
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|1200679745|gb|OUX74530.1| (hypothetical protein CBC49_10050 [Alphaproteobacteria bacterium TMED89]) HSP 1 Score: 100.138 bits (248), Expect = 1.148e-18 Identity = 108/399 (27.07%), Postives = 173/399 (43.36%), Query Frame = 0
Query: 18 HPTH-LIYRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMDA-QAWLDARRRQLRTVQNANYTVFTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITR----PLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNK-HCPGYPGQLPIDL-ARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGH--FELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGT 406
HP Y ++G+AA+ R+ PL+ + V ++ + DFVW+ R + L ARV + L N +L++K LAL+ + + +LET + DA AW D R Y+ + T D ++ W+LK A ANG G + V+ + L YV QRY PL+L K H RVYALL G +++Q F+ A++ + A C +A + D + H+TN N + G++ + L + P+ + CM+ + RAAAPF+ + G FE G D++ +D+ +L+E+N P Q + + L+D ++ ELL L V+P L T
Sbjct: 21 HPVQPFTYFVSGSAARCRLEPLMAKLPGVF-------SSTMASVRDEGADFVWQNTPTRDARHLRARARVYSHLPNGSMLDDK----WALALLQRRMR-CDMLETHCLPGRDAFLAWADRR-----------YSGSDNATGDDDDMWVLKDAQANGAGGIWVISRS-NWRRVGEQLHARHRYVAQRYAGSTNAPPLVLWNGRKCHMRVYALLTSEG------------------DMYLHQRAFLHVANKPFSWA--CPAAGDFDDSVHITNCCANSDDKSAFAGEICVHLPSEYPKGWDCMRTVMGELARAAAPFVGLGGADGSVGFEYLGCDFV-------------IDEAGGAWLLEVN-CPPSQDTATGLPHAEALHDAVLGELLALVVVPALQRT 361
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|219110076|ref|XP_002176790.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411325|gb|EEC51253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 85.1149 bits (209), Expect = 7.793e-14 Identity = 123/502 (24.50%), Postives = 195/502 (38.84%), Query Frame = 0
Query: 22 LIYRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVP-----------LDFVWETHVARRDKPLHDCARVLNRLSN-TVILENKAYFSHILALV------------------SSQNQDIPVLETAVVRAMDAQAWLD-ARRRQLRTVQNAN------------YTVFTDCTEDA--------EEWWILKAAGANGGGDVHVLPPACTHVPACIA-LRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHH-ATKCGSANEIDAAAHLTNLSLNKHCP-GYPGQ------------LPIDLARAPRT--FGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRWAMHMR 455
+ + TG+AA R++PL+ WI + D P P + WE KP D + + L N T IL+ K S +L +QN D+ +LET R+ A + D AR+ L+ N+ Y T A W++K A ANG G V V+ A A L YV QRY+ P+L + + K H RVYAL+ G + +++ F+ A+E + A + + A H+TN N H P + G+ LP P F ++A AA+ AP+L+ + FE GLD+L + + D + + YL+E+N P Q + ++L+D ++R+LL L ++P+++ S GGW + V + D +P + I N +RWA++ R
Sbjct: 30 IYFSATGSAAHKRLIPLV----PASWI----DVSPYAPDGPSPSIRDRCRSRPSMLVCWENSPRNATKPYRDNLQCYSHLPNGTAILDCKWVLSRLLGNARPPDPPRLSQKQHQEEEEKNQNIDLAILETHCFRS--ASGFEDFARKVHLKRPSNSTSARMQRHSFRDLYPSVPAMTSVALLPPSCSNPNLWVVKDASANGAGGVWVVGAANAESFARDGPLIDTHRYVAQRYVWPPVLFQGR-KCHVRVYALITADG------------------KAYVHHRAFLHVANELFSTTAYENNGETAFEDAVHITNCCANSHNPEKFAGEICASFLASEWETLPCGQGVVPLADYFSSVRASVAALALRTAPYLQGGVGNHGFEYMGLDFL---LSHSTSDDGNANDRPLAYLLEVNAPPS-QDTATGLPHAEDLHDEVLRDLLSLWIIPYVTHV------PSVPGGW-QCVYETPLSFEEKDAPTPSEAAI-LNKIRWALYER 490
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|1210512597|dbj|GAX28454.1| (hypothetical protein FisN_4Hh355 [Fistulifera solaris]) HSP 1 Score: 83.1889 bits (204), Expect = 2.853e-13 Identity = 109/461 (23.64%), Postives = 173/461 (37.53%), Query Frame = 0
Query: 24 YRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSN-TVILENKAYFSHIL-------ALVSSQNQDIPVLETAVVRAMDAQAWLDARRRQLRTVQNANYTVFTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPL---DSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKH---------CPGY---------PGQLPIDLARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRWAMHMR 455
++ITG+AA++RI PLL + +W+ G +DF+WE K D + L N T IL++K + + L QN + +D + R L + TD + +WW++K A +NG G + V+ P P YV Q Y PL+L + K H RVY L+ G + +++ F+ H A + + + H+TN N H C + G++ I LAR + + A + PFLR +G FE GLD++ L DS +L+E+N P Q + + L+D ++++LL L V P + G + + G W V V E+ V + K N +RWA+ R
Sbjct: 11 FKITGSAAKSRIAPLLPD----NWVEGDTN-----------VDFLWENAPRAVTKSFRDDVMCYSHLPNGTNILDSKWVLARLFQDAHCFTGLAGFQN--FCRRQQCSSDVVDDEESFPQRCLDLFPGYES-----TDIITNFSDWWVVKDASSNGAGGIWVVSPQNRSFYQDARTSPFVENHRYVAQPY-AWPLVLFQGRKCHVRVYGLVTSDG------------------RAFVHDRAFL-------HVANEAFTGENMQDTVHITNCCANSHDLAQFSGEICAHFGVDSNRLTAEGEIEIGLARYKQA---IHDKVAQLAERTGPFLRGGHRNGGFEYLGLDFI-------------LTGDDSAFLLEVNAPPS-QDTATGLPHAEALHDAVLQDLLHLWVYPRVLG------QDEQPGDWQCVYTPSVVES--VQASVVPSKAAVVNKMRWALLER 398
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|1210521941|dbj|GAX19376.1| (hypothetical protein FisN_4Lh355 [Fistulifera solaris]) HSP 1 Score: 71.633 bits (174), Expect = 1.253e-9 Identity = 107/448 (23.88%), Postives = 169/448 (37.72%), Query Frame = 0
Query: 24 YRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSN-TVILENKAYFSHILALVSSQNQDIPVLETAVVRAMDAQAWLDARRRQLRTVQNANYTVFTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPL---DSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYH--------HATKCGSANEIDAAAH----LTNLSLNKHCPGYPGQLPIDLARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSGTGAKNDHESKQGGWSEVVIKDVDENMFVDLASPGDKEIHHNVLRWAMHMR 455
++ITG+AA++RI PLL +W+ G +DF+WE + D + L N T IL++K + + + + R + +D R T+ +WW++K A +NG G + V+ P P YV Q Y PL+L + K H RVY L+ G + +++ F+ A+E + H T C AN D A +L ++ + G++ I LAR + + A + FL+ +G FE GLD++ L DS +L+E+N P Q + + L+D +I +LL L V P + G E + G W V V E+ F P K N +RWA+ R
Sbjct: 11 FQITGSAAKSRIAPLLPP----NWVEGDTN-----------VDFLWENAPRAVTRSFRDNVACYSHLPNGTNILDSKWVLARLFQDAHCFT-GLAGFQHFCRRQKCSSDVVDDESFPQRCPDLFPGYESTEIFTSFRDWWVVKDASSNGAGGIWVVSPQNRSFYQDARTSPFIENHRYVAQPY-AWPLVLFQGRKCHVRVYGLITSDG------------------RAFVHDRAFLHVANEAFTGENLQDTVHITNC-CANSHDLAQFSGEICAHLRVDSNRLTAEGEIEIGLARYKQA---IHDKVAQLGEHTGSFLKGGQKNGGFEYLGLDFI-------------LTGDDSAFLLEVNAPPS-QDTATGLPHAEALHDAVIHDLLHLWVYPKVLG------QEEQPGDWQCVYAPTVVES-FQASGVP-SKAALANKMRWALLER 397
BLAST of EWM29350.1 vs. NCBI_GenBank
Match: gi|1026921698|gb|OAF69976.1| (putative tubulin polyglutamylase TTLL9 [Intoshia linei]) HSP 1 Score: 69.707 bits (169), Expect = 3.109e-9 Identity = 64/261 (24.52%), Postives = 109/261 (41.76%), Query Frame = 0
Query: 148 YTVFTDCTEDAE---EWWILKAAGANGGGDVHVL---------------PPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYHHATKCGSANEIDAAAHLTNLSLNKHCPGY-PGQLPIDLAR------APRTFGCMKAHW----AAVVRAAAPFLRAQASSGH-FELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQ 378
Y +F +C ++++ + WI+K A + G + + CTH L P+++YVVQRYI P L+ K KF R+Y L++ + W+Y+ GF ++ RY G++ + HLTN+++ K P Y P L + L + A + + A + ++++ + + H FEL+G D L +DK +L+E+N P L SS Q
Sbjct: 117 YHMFVECFKESKNSGQIWIMKPAAKSQGKGIFLFRRLKDIIDWKKSESYNSPCTHKQDNTELVPIETYVVQRYIQNPYLIGGK-KFDLRIYVLVQSYN----------------PLKVWLYRSGFARFSNTRY------GNSEIDNKYVHLTNVAVQKLAPNYDPNCLKLSLQKLRDYLTAKHGYKIVNALYKNIDTIIIKSLQSVRKIIINDKHCFELYGYDIL-------------IDKDLKPWLIEVNASPSLTSSSQ 341 The following BLAST results are available for this feature:
BLAST of EWM29350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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