rna129, rna129 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna129
Unique Name	rna129
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3126
Alignment location	CM002455.1:341018..343200 +

Link to JBrowse

Properties


Property Name	Value
Product	rrna maturation factor
Orig transcript id	gnl\|cribi\|Naga_100013g95.9777.mrna
Orig protein id	gnl\|cribi\|Naga_100013g95.9777
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:341018..343200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g95	gene123	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna129	rna129-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30489.1	cds129	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:341018..343200+
coding sequence from alignment at CM002455.1:341018..343200+

mRNA sequence

>rna129 ID=rna129|Name=rna129|organism=Nannochloropsis gaditana|type=mRNA|length=3126bp
GAACAAGGGCGAGAGGCGCGGCGAGTCTGGGAGCCTCAAGGAGCACATCG
TCCCCCCATCTGCCTTCTAAAGGCAGGCGCACGCGTGCGACCCTGAATAT
GTCGTTGGCACGGTTGCCCTGAGGGTTGCTACCAGTGCGGTTTTTGATTC
ACGAAATAATTCCTCTTTCTATAGACGTACAGCAACAGTTGTCGTACCAG
CCACTGAGCTCTTTCCTACCGTCCAGATGGAATCGACTTTCAAGCTTCAT
CCCCTTCCTCAAGTAGTTCTAGAGGCCCTACAGGCTGCTTCATCTAAAGA
GGGATGTCCTGAGGGTATGGAAATTGTTGGTGGCCTGACAGAGGAGCAAC
AAAGTCTGCTTACTTTGGAAATTCTTACCCATGTCCGCGACTTGGTCCGC
ACCGAGCGCACTTTCAGTCCCAATTTGGAGGGATTGATGGCTCTTCGACG
TGCTCGCCAGGAGGAAATCTACAAGAACATCCTCGAGAAGCGGCCCGCCA
TGTCGTTCCCGGCCGAGACTCAGACCATTCGCGACGGCGATTGGAAAAGC
GAGACGCACCGTCCCCCCAACATGGCTGACCGGGCCTGCGAGAACACACA
TCCGAGTCGAGCCGCGAACATGGCCATCCACGGATTGAACAGCAAGGCAG
CCTCGGATTTCATGGACAATGAGGACTCCCAAGCCCCGCTCAAGGCCAAT
GTCTTAGCAGGCTACCGCACGATTTACGAGGCCGTTTGTGGGACCATTAA
AGACGTCCGACCCAACTCCAAAACCGTGCTGAAAGGTCGCTTGAGCCCGC
AGGACCTGGAGCCCTTTTCTTCGAATGCGGATGCCACCTTCCAGGCCCTT
CAAGAGGCTGGGGTGTTGAACGGACACGGGCGGATCACGGACCTGTTGTG
CGAACCCGACTTCGTCTTGGAGGAAAACGTGACGTCCACTGTGACAGATC
TCAAGGGGTTGGACGGATTTTTGAGGGAGCGACGCCCCGCCACCATCCAG
GTGCGTGTTCGGGGCCTGCACATGCTCGAGGGCCACTTCCTGGTGGACGG
CAAGCCCGTGTCGGCGCCCTTGTTGGACTTCGCCGTCTTTGTCGCCACCT
GCCATGCTCCCTTGGCGGCCATGGCCGCTCAACCCACCCTCTACCTGCCC
AAGATGGAGAGTCGGCATGAGACGGCGTGGTGGGCTAAGGTCTTCGCCGC
CATGGCCGCCCAGCTCGGGATCCCGCCCAAGGCTATCCGCTCCACGACCA
TGATCGAGACCATCACGGCCAGCATGGAGAAGGAGGAGATGAACTACACC
CTGCGCGAGCACTCTCTCGGTCAAAATAAGGGGCGGTACGACTATCTATT
CAATTTCATCAAGCGCCTGACCCTACCGAAGTCCCTGCAAGCGAACCTCT
CCCCTACTCCCAACAACCTGGAGTTGGTCGGCACCCATGCGCCCCACCGC
CGCTACCTCCTGCCCGACAACGCCCACACGGGCATGGGGGTCTCCTTTTT
GGAAGCGTACTCCAACCACACCTCCCAAGTAAACCTTCGTCGCGGCTTCG
ACTCGGTGGGGGGCATGGTGACCAACATCCCCACGGGCGACCCCGCCATC
GATAAGAAGGCCCAGGCCAAGTTGCGCGTGGACAAGACGAACGAGGCGTG
GAAAGGGGACGCGGGAGGTTGGAGCGGCCACCCGGCTTTCTCGCCCTACG
TTCGGGAGCCCTTTGACATCGTGCGTGCCCTGCATCGCGGCCTGGCAGTC
TTGGCGAAGCAGGTAGGGGAGGCGAAAGTCCGGGGCACCATAAAGGGGCC
CGCGGATCCAGCCAGCATCCGGCAAGCACTGGCCGATTTAGTGGCCTCGA
TCTCGGTGGAGAATGGCGGGCGGGAGAGTGAGACGCTCGCAGCGTTTTTG
AAGGCCTTGGAGACGTCTCTAAGCCTGCACGTGGCAGCCAATGCGGCGCA
ATACCAGGATGGTCTGCTCCGTTTCATCCGGATGGAGCCTCCCTCCCCGG
ACGTGAAGGACCACGAGTTGATCGAGGTCCCGGCGGACCAGCACACGCCT
GACAAATTTACCTACGCGGGCCTCAAGCAGTACCTGCGCTTGGCCCTTTT
CTACACCGCGAGCTTCATCCATGGCACGGGCTGCATTGCCTTGGACGGGG
TCTTTGAAGATTTGGCCACCGCGGAGAAGGCGCGCGTGAACGTGTGGCAG
TGGCTTACGCTGGACCAACCGCTCATGCTCTCCTCCTCGTCCTCTGCCAC
CCTCACGCCCGCGCTGCTTGCCCAAGCGATGGAAGAAGTCTACCACGCGG
CCCTGCACGACGAACGGGGCCTCTGGGGGGCCGTTTGCAAGTCCGTGCCT
CCGATGCAGCCGGACTCGCTCGCCGAGAAGCACTTCCGCGTCGCCCGCAA
GGTGTTGATGATTTTGATGACGAACGACCGCTGCATCGAGTTCATTCCCG
ATCTGGCCTACCCCTTCTTGCTCGACCCTGTCCGGGAGGACGACAAGCTG
TGGGCTCAGGTGGAGGAGGGGCTGGACGCGTACGCGGATCCGATGACCAG
ATATGTAGTGGGCAAGAAGGAGGTTTAGTTCTGAGACACGACGGCGGCAA
AGAAAGCTTGAACAAGGCAAAGAGGGGTGTTACCCATGCGACGTGGCATT
CGTCTTCCTGCTTTGGGTTATAAAGAGTTACGGAATGCTGCCAAGAGCAG
GGATCTTTCTGAGGATGGCAGCCATACGAAACACGCGACTTGCGGTAGGA
GATTTTTGAGATTTTGAAGATGAAGGTGATAGAATAGATGTAAGGAAAAG
CGGAACGATTTTGCTATAACATGATTTGAGGAGAAGAGAAGAAGAAAATA
TGACAAGAAAAACCAATAAAAAGGGAGGGTTACGACTTACTGGTGGTCAA
AAGGTATCGAGCGTTATGGGCGAGGGTAGAGGGACAAGCATTTTTTGTTG
GCTACAATGCACTGATGAAAATAGGTGTCGATTGAGAGTTCATGGTAGCC
TCACGGGCACCTTGTTTTCTTTTTCGAAGATTAATGGACTTTCTAGGGCA
TCGATGTACCGCGTGACCCGCCGACCAATTTTTGAAAATGTCTGGCTCAT
CAAGACAACCAGGGGATGGTCAGTTT

protein sequence of rna129

>rna129-protein ID=rna129-protein|Name=rna129|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MPPLSSTPLILIMFLCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFP
PSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKD
HKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEG
MEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEEEEKEEVAVGRRVHSSF
QSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLW
LTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKD
LGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRL
PFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAP
EMNRGDAGGQRRGFHKPNRTISGTI

mRNA from alignment at CM002455.1:341018..343200+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna129 ID=rna129|Name=rna129|organism=Nannochloropsis gaditana|type=mRNA|length=2183bp|location=Sequence derived from alignment at CM002455.1:341018..343200+ (Nannochloropsis gaditana)
AGATGAAGCAGCCTGTAGGGCCTCTAGAACTActtgaggaaggggatgaa
gcTTGAAAGTCGATTCCATCTGGACGGTAGGAAAGAGCTCAGTGGCTGGT
ACGACAACTGTTGCTGTACGTCTATAGAAAGAGGAATTATTTCGTGAATC
AAAAACCGCACTGGTAGCAACCCTCAGGGCAACCGTGCCAACGACATATT
CAGGGTCGCACGCGTGCGCCTGCCTTTAGAAGGCAGATGGGGGGACGATG
TGCTCCTTGAGGCTCCCAGACTCGCCGCGCCTCTCGCCCTTGTTCTTCAA
CAGCACCCTGGgccagaggggggaaaaacaCCTTAGAAGTCCTTGACAAT
ATTATTGCCTTGCACATACTACGTCGTTACGCACATTTTCACGATCTGTT
GTACACAGGGTAGAGCAGGGCGATAGCCTTGCTGCATCCGCGCAGCGGGC
GGTGACCAACTATCTTCTTCACTCCCCATTTCCCAGCGCCAAGATACTTg
tccatgccccccctctcctccacgccgttGATCTTAATAATGTTTTTATG
CTATGGCTCCGCACCACGACGAGTTTTGGGTTTTAGAATTATTTGGAACT
CCCCCTTGCACTATGCCACACCACATTTGGGCGCGCGAACGTCAGGTTTT
CCTCCCAGCCAGACAGCGCTGTCGACGTGGAGCTGCTGCCCTCCGCTGGT
TCAGTCATCCCGCCGCTCACCCTTCCAGTCGTCCACCCTGCGTTTCGCCA
TTCCTGCTGCTTCGTTTAGCGCAGGGAAGGGTAATGAACGGAAAGTGAAG
GACCACAAAAGGAGGACACCGAAAAATAAACACGTCGACGAAGACGAAAC
CAATGACGTTCAAGAAATGACAGAGACAGAGCTGCTCAAAATAATGCAGA
GTGGAGAGGCAATGGATGCTGTATGGCAGCGAATGATGAGCCaaatggag
gggatggaggccttggatagcgaggatgatgaagatgaggaggattgGGA
GGAATtcgacaaagaggaggaggaggaggaggaggaggaggaggaggagg
aggaggaggagaaggaggaggtcgctgtgggaaggagggtccACAGCTCC
TTTCAATCTCCCTTCCCTGAAGACAAGCCTCTTGGGACGATTCAAATTCG
CAACTCGCAGCGCACCATCGCTCTTGACCTAGACCTCTTGCACGCTCAAG
TCCGGACGATCCTTGAGATAGTCGGGAAATCCGATCACGACGTTTCTTTA
TGGCTGACGAACGATCGGAGCATTCGAGAGTACAATGACCGTTACCGAGG
CAAACGAACGGCCACAGATATactgtctttccccttccacgaaTACGAGG
CCCCGGGTATCCCGACCTCGGAGTCTTGGGCCCTGACGGGGGAGGTCAAG
GATTTGGGGGATATGATCGTTTCCGTCCCATACGTGCAGCGTCAGTGCCA
GCGGGATCAGGCAGATTggttggagaaaggggagaattTGTGGTCGGGCG
AGCGGGGGGCTTCGGGTGCGATGGCGCGGGTCTTCGGCGTGCAGGATCGT
CTTCCCTTTTTGGTCATTCATGGCGTCTTGCATCTGCTGGGCTTCGACCA
TGAGACGGACAAGGACTACAACGAGatggtcaaggaggaggatcgggTGC
TCGCGGAGTTTAAAAAGAAGTTTGCGTCCACGGGTTTGTCGGAGGCGGCA
CCGGAAATGAACAGAGGCGACGCCGGAGGCCAACGAAGAGGGTTTCACAA
GCCGAACCGCACAATCAGTGGTACCATCTAGCGCTTTGAAGCGGGCAAAG
AGACCACGACCTGCACGGTCCACAGAAAGATAAGCATGAGCCATGGGTGA
ACCTGGAATTAGAAAAGTGAAGAAGACTGTACGTCGGGTGCCAGGGGCAG
AAGCATTTGAATTTACTCTCAAAACATGATGTAAAaagaccctctcctcc
gttcTGCGTAATTAAACGCCGATAATGTACCATAAGAAATGAACAAGGAA
TTAACGAGTAAATTGATAGGCGTGAATCATGTGGGCCTTAGGCGGCTTTA
GGCTTGCCTTCTGACATTACGTTGGTTGGTGCTTAGAAAGGAGCTTGGCA
TAATCCCCAATTTTTAATCTGGCTGCAAGTCCTTCCACGCAAAACACTAG
TGATAGATTCCATGTCCCTAGCCCGCTACAGCT

Coding sequence (CDS) from alignment at CM002455.1:341018..343200+

>rna129 ID=rna129|Name=rna129|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002455.1:341018..343200+ (Nannochloropsis gaditana)
atgccccccctctcctccacgccgttGATCTTAATAATGTTTTTATGCTA
TGGCTCCGCACCACGACGAGTTTTGGGTTTTAGAATTATTTGGAACTCCC
CCTTGCACTATGCCACACCACATTTGGGCGCGCGAACGTCAGGTTTTCCT
CCCAGCCAGACAGCGCTGTCGACGTGGAGCTGCTGCCCTCCGCTGGTTCA
GTCATCCCGCCGCTCACCCTTCCAGTCGTCCACCCTGCGTTTCGCCATTC
CTGCTGCTTCGTTTAGCGCAGGGAAGGGTAATGAACGGAAAGTGAAGGAC
CACAAAAGGAGGACACCGAAAAATAAACACGTCGACGAAGACGAAACCAA
TGACGTTCAAGAAATGACAGAGACAGAGCTGCTCAAAATAATGCAGAGTG
GAGAGGCAATGGATGCTGTATGGCAGCGAATGATGAGCCaaatggagggg
atggaggccttggatagcgaggatgatgaagatgaggaggattgGGAGGA
ATtcgacaaagaggaggaggaggaggaggaggaggaggaggaggaggagg
aggaggagaaggaggaggtcgctgtgggaaggagggtccACAGCTCCTTT
CAATCTCCCTTCCCTGAAGACAAGCCTCTTGGGACGATTCAAATTCGCAA
CTCGCAGCGCACCATCGCTCTTGACCTAGACCTCTTGCACGCTCAAGTCC
GGACGATCCTTGAGATAGTCGGGAAATCCGATCACGACGTTTCTTTATGG
CTGACGAACGATCGGAGCATTCGAGAGTACAATGACCGTTACCGAGGCAA
ACGAACGGCCACAGATATactgtctttccccttccacgaaTACGAGGCCC
CGGGTATCCCGACCTCGGAGTCTTGGGCCCTGACGGGGGAGGTCAAGGAT
TTGGGGGATATGATCGTTTCCGTCCCATACGTGCAGCGTCAGTGCCAGCG
GGATCAGGCAGATTggttggagaaaggggagaattTGTGGTCGGGCGAGC
GGGGGGCTTCGGGTGCGATGGCGCGGGTCTTCGGCGTGCAGGATCGTCTT
CCCTTTTTGGTCATTCATGGCGTCTTGCATCTGCTGGGCTTCGACCATGA
GACGGACAAGGACTACAACGAGatggtcaaggaggaggatcgggTGCTCG
CGGAGTTTAAAAAGAAGTTTGCGTCCACGGGTTTGTCGGAGGCGGCACCG
GAAATGAACAGAGGCGACGCCGGAGGCCAACGAAGAGGGTTTCACAAGCC
GAACCGCACAATCAGTGGTACCATCTAG

Synonyms

Publications