EWM30489.1, cds129 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|585113153|gb|EWM30489.1| (rrna maturation factor [Nannochloropsis gaditana]) HSP 1 Score: 880.937 bits (2275), Expect = 0.000e+0 Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0
Query: 1 MPPLSSTPLILIMFLCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEEEEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQRRGFHKPNRTISGTI 425
MPPLSSTPLILIMFLCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEEEEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQRRGFHKPNRTISGTI
Sbjct: 1 MPPLSSTPLILIMFLCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEEEEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQRRGFHKPNRTISGTI 425
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|676378931|ref|XP_009032744.1| (hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens] >gi|323457282|gb|EGB13148.1| hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens]) HSP 1 Score: 156.762 bits (395), Expect = 5.362e-42 Identity = 78/184 (42.39%), Postives = 119/184 (64.67%), Query Frame = 0
Query: 204 FPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFK 387
+ + +GT+ IRN+QR+I +D+D + + R +LE + S+ DV +WLT D +IR+YN R+RG R +TDILSFPFH+ APG + +LGDM+VSVPYV+R+ ++D G + G RG + AMA V V++R+ L++HG+ HLL +DHETD ++ +MV ED +L ++
Sbjct: 30 YASAQRVGTVLIRNTQRSIPIDVDAVESVTRALLERLRCSEFDVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHDELAPGALPDAVDRDDEDDLNLGDMVVSVPYVRRRAEKD------GGRDHAPG-RGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEFEDMVALEDELLETYR 206
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|219109735|ref|XP_002176621.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411156|gb|EEC51084.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 139.043 bits (349), Expect = 1.563e-35 Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = 0
Query: 204 FPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKK 389
PE+ P G I + N+Q ++ +DL+ L A + I +++G +DVSL L +D+ +RE N+ RG TD+LSFPF E PG+ T + G+ ++GDM++ VPYV R CQ D A + +L +RG S AMA V ++R+ L++HG+LHL+G+DH D DY MV +E+ +L KK
Sbjct: 10 LPENPP-GDIYVENNQESLNIDLERLKATIAKIRDLMGYRTYDVSLLLVDDQEMRETNEETRGMDEPTDVLSFPFTEAIEPGVLTPPVVDI-GDYYNMGDMMIDVPYVIRACQ-DDAKY--SHSDLEDEDRGVSAAMAMVMDPEERINMLLVHGMLHLVGYDHIDDDDYQLMVAKEEEILRLLGKK 190
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|873233558|emb|CEM03215.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 142.124 bits (357), Expect = 5.526e-34 Identity = 77/180 (42.78%), Postives = 112/180 (62.22%), Query Frame = 0
Query: 211 GTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSF-PFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADW---LEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEF 386
G I + NSQR IALD+ LL Q++ I +I+G S D+ + L +++ ++ N +R K TDILSF F + E +P S E DLGD+ +S YVQ +C D+A+ LE S ERG SGAMA+ F V++RLP LVIHG+LHLLG+D ++D D++ MV E++V+ ++
Sbjct: 145 GEITLTNSQREIALDMGLLERQIKHIRDIIGVSAFDIGVELVDNQRMQHLNRDFRAKDRPTDILSFRCFDDIEPGSLPKVTS----AEDLDLGDIFISAEYVQERCDEDRAEMEAQLEDNGEFVSTERGVSGAMAKTFTVRERLPLLVIHGILHLLGYDDQSDSDWSMMVNREEQVIKQY 320
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|298711736|emb|CBJ32782.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 133.65 bits (335), Expect = 2.367e-32 Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 0
Query: 211 GTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYE-APGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENL-----------WSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVL 383
GT ++N Q+ +D L +++R +E++G DV LT D+ + N +YRG T+TDILSFP H+ +PG+ + DLGDM +S+ YV RQ +RD+ + W ERG SGAM+RVF VQ+R L++HG++HLLG+DHET+ DY MV E+ VL
Sbjct: 104 GTASVQNEQKEYEIDTAELQSKMRQTMEVLGCQAWDVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAE---MDLGDMFISLAYVDRQIKRDREEQAAAVAAAAAGGGGQEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 285
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|1210528867|dbj|GAX12510.1| (hypothetical protein FisN_24Hh086 [Fistulifera solaris]) HSP 1 Score: 122.479 bits (306), Expect = 9.464e-29 Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 0
Query: 190 VAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIA-LDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADW---LEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEF 386
++ GRR + S P G I +N Q + +D L + I +G + VSL L D ++E N RG TDILSFPF EY PG + + + LGD++V VPYV R+CQ D+ + + + ERG SGAMAR++ ++R+ L+IHG+LHL+G+DHE D+DY MV +E+ +LAE
Sbjct: 31 ISRGRRQIRCYGSK-PGSSIPGKILFQNDQTNVLEIDEARLLETLNRIRRHIGYETYGVSLELIGDEEMQEINLESRGVDAPTDILSFPFSEYIEPGTLEPPQFDIP-DYYQLGDLLVDVPYVMRRCQEDKEYYEQLDDSDDEEEEDERGVSGAMARIYDAEERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEILAEL 229
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|762123667|ref|XP_011444821.1| (PREDICTED: putative ribonuclease [Crassostrea gigas]) HSP 1 Score: 116.316 bits (290), Expect = 2.903e-27 Identity = 62/195 (31.79%), Postives = 104/195 (53.33%), Query Frame = 0
Query: 212 TIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPG-IPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRG 405
T+ N Q+ + L+ L +Q+ + ++ G +D+S+ + I + N +YRGK+ TD+L+FPF+E PG +PTS+ V DLGD+ + +PY+ QC+R+ + +Q+ LP +V HG+ HL+G+DHET++ Y EM +E +L+EF K +TG + P + G
Sbjct: 2 TLLFENLQKVVPLNRIRLKSQINILRKLFGVKSYDLSVTCLTSQEIAKINAQYRGKKEPTDVLAFPFYENLVPGRLPTSQEHG----VLDLGDIYLGIPYIYHQCKRNNQN------------------------IQEVLPVMVTHGICHLIGYDHETEEQYKEMYAKESVILSEFNK---ATGFN-CTPLLQVG 164
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|1072233838|gb|OEU18568.1| (zincin, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 116.316 bits (290), Expect = 6.943e-27 Identity = 72/198 (36.36%), Postives = 109/198 (55.05%), Query Frame = 0
Query: 208 KPLGTIQIRNSQRTI-ALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGE-----VKD---LGDMIVSVPYVQRQCQRD----------QADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEF 386
P G + I N Q++I ++ D + + I +++G +DV++ L +D +RE N RG + TDILSFPFH+ P +++ A E + D LGDM++ VPYV R+CQ D D + G G+RG GAMA V + R+ L++HG+LHL+G+DH D+DY EMV+ E+ +L E
Sbjct: 12 NPPGCVSIYNDQKSIKGINEDAISDTISKISKLIGYDTYDVTVLLVDDEEMRETNLESRGIDSPTDILSFPFHQ---PNFTANDNEAGLLEEPEFDIPDYYTLGDMVICVPYVIRRCQEDILALGDDNDYDDDESDVGGVENDGDRGVCGAMADVRDPEKRIRMLLVHGMLHLVGYDHIEDEDYIEMVEREEEILKEI 206
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|818350940|gb|KKQ32596.1| (hypothetical protein US49_C0006G0047 [candidate division TM6 bacterium GW2011_GWF2_37_49]) HSP 1 Score: 113.235 bits (282), Expect = 2.429e-26 Identity = 67/178 (37.64%), Postives = 101/178 (56.74%), Query Frame = 0
Query: 213 IQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKF 390
I I+N QR I +D+ LHAQ + IL ++ +D D+++ LT ++SI N+++R K ATDILSFPFH PG + + + K+LGD+I+S+ +VQ+ D EK W+ +Q L L+ HG+ HL+G DH TD +YNEM+K E R+L K ++
Sbjct: 2 ILIKNRQRKIKVDVKKLHAQAQKILGVLDYADFDLNILLTTNKSIHAINNQFRNKDKATDILSFPFHPNLKPG---QKIKVTSPDDKNLGDIIISLEHVQK-------DAAEK----WNR------------TLQHHLTALLAHGIAHLIGHDHHTDNEYNEMLKLEKRLLKSVKLEY 153
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|405973345|gb|EKC38064.1| (Putative metalloprotease C21orf57 [Crassostrea gigas]) HSP 1 Score: 111.694 bits (278), Expect = 3.455e-25 Identity = 59/187 (31.55%), Postives = 100/187 (53.48%), Query Frame = 0
Query: 220 RTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPG-IPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRG 405
+ + L+ L +Q+ + ++ G +D+S+ + I + N +YRGK+ TD+L+FPF+E PG +PTS+ V DLGD+ + +PY+ QC+R+ + +Q+ LP +V HG+ HL+G+DHET++ Y EM +E +L+EF K +TG + P + G
Sbjct: 39 KVVPLNRIRLKSQINILRKLFGVKSYDLSVTCLTSQEIAKINAQYRGKKEPTDVLAFPFYENLVPGRLPTSQEHG----VLDLGDIYLGIPYIYHQCKRNNQN------------------------IQEVLPVMVTHGICHLIGYDHETEEQYKEMYAKESVILSEFNK---ATGFN-CTPLLQVG 193 The following BLAST results are available for this feature:
BLAST of EWM30489.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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