EWM30489.1, cds129 (CDS) Nannochloropsis gaditana

Overview
NameEWM30489.1
Unique Namecds129
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:341521..342798 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30489.1
Productrrna maturation factor
Orig transcript idgnl|cribi|Naga_100013g95.9777.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:341521..342798 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004222metalloendopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0019538protein metabolic process
GO:0006364rRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR020549YbeY_CS
IPR023091MetalPrtase_cat_dom_prd
IPR002036YbeY
Homology
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|585113153|gb|EWM30489.1| (rrna maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 880.937 bits (2275), Expect = 0.000e+0
Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0
Query:    1 MPPLSSTPLILIMFLCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEEEEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQRRGFHKPNRTISGTI 425
            MPPLSSTPLILIMFLCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEEEEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQRRGFHKPNRTISGTI
Sbjct:    1 MPPLSSTPLILIMFLCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEEEEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQRRGFHKPNRTISGTI 425          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|676378931|ref|XP_009032744.1| (hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens] >gi|323457282|gb|EGB13148.1| hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens])

HSP 1 Score: 156.762 bits (395), Expect = 5.362e-42
Identity = 78/184 (42.39%), Postives = 119/184 (64.67%), Query Frame = 0
Query:  204 FPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFK 387
            +   + +GT+ IRN+QR+I +D+D + +  R +LE +  S+ DV +WLT D +IR+YN R+RG R +TDILSFPFH+  APG           +  +LGDM+VSVPYV+R+ ++D       G +   G RG + AMA V  V++R+  L++HG+ HLL +DHETD ++ +MV  ED +L  ++
Sbjct:   30 YASAQRVGTVLIRNTQRSIPIDVDAVESVTRALLERLRCSEFDVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHDELAPGALPDAVDRDDEDDLNLGDMVVSVPYVRRRAEKD------GGRDHAPG-RGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEFEDMVALEDELLETYR 206          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|219109735|ref|XP_002176621.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411156|gb|EEC51084.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 139.043 bits (349), Expect = 1.563e-35
Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = 0
Query:  204 FPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKK 389
             PE+ P G I + N+Q ++ +DL+ L A +  I +++G   +DVSL L +D+ +RE N+  RG    TD+LSFPF E   PG+ T     + G+  ++GDM++ VPYV R CQ D A +     +L   +RG S AMA V   ++R+  L++HG+LHL+G+DH  D DY  MV +E+ +L    KK
Sbjct:   10 LPENPP-GDIYVENNQESLNIDLERLKATIAKIRDLMGYRTYDVSLLLVDDQEMRETNEETRGMDEPTDVLSFPFTEAIEPGVLTPPVVDI-GDYYNMGDMMIDVPYVIRACQ-DDAKY--SHSDLEDEDRGVSAAMAMVMDPEERINMLLVHGMLHLVGYDHIDDDDYQLMVAKEEEILRLLGKK 190          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|873233558|emb|CEM03215.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 142.124 bits (357), Expect = 5.526e-34
Identity = 77/180 (42.78%), Postives = 112/180 (62.22%), Query Frame = 0
Query:  211 GTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSF-PFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADW---LEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEF 386
            G I + NSQR IALD+ LL  Q++ I +I+G S  D+ + L +++ ++  N  +R K   TDILSF  F + E   +P   S     E  DLGD+ +S  YVQ +C  D+A+    LE      S ERG SGAMA+ F V++RLP LVIHG+LHLLG+D ++D D++ MV  E++V+ ++
Sbjct:  145 GEITLTNSQREIALDMGLLERQIKHIRDIIGVSAFDIGVELVDNQRMQHLNRDFRAKDRPTDILSFRCFDDIEPGSLPKVTS----AEDLDLGDIFISAEYVQERCDEDRAEMEAQLEDNGEFVSTERGVSGAMAKTFTVRERLPLLVIHGILHLLGYDDQSDSDWSMMVNREEQVIKQY 320          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|298711736|emb|CBJ32782.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.65 bits (335), Expect = 2.367e-32
Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 0
Query:  211 GTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYE-APGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENL-----------WSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVL 383
            GT  ++N Q+   +D   L +++R  +E++G    DV   LT D+ +   N +YRG  T+TDILSFP H+   +PG+     +       DLGDM +S+ YV RQ +RD+ +                   W  ERG SGAM+RVF VQ+R   L++HG++HLLG+DHET+ DY  MV  E+ VL
Sbjct:  104 GTASVQNEQKEYEIDTAELQSKMRQTMEVLGCQAWDVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAE---MDLGDMFISLAYVDRQIKRDREEQAAAVAAAAAGGGGQEEEWWDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVL 285          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|1210528867|dbj|GAX12510.1| (hypothetical protein FisN_24Hh086 [Fistulifera solaris])

HSP 1 Score: 122.479 bits (306), Expect = 9.464e-29
Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 0
Query:  190 VAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIA-LDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADW---LEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEF 386
            ++ GRR    + S  P     G I  +N Q  +  +D   L   +  I   +G   + VSL L  D  ++E N   RG    TDILSFPF EY  PG      + +  +   LGD++V VPYV R+CQ D+  +    +  +     ERG SGAMAR++  ++R+  L+IHG+LHL+G+DHE D+DY  MV +E+ +LAE 
Sbjct:   31 ISRGRRQIRCYGSK-PGSSIPGKILFQNDQTNVLEIDEARLLETLNRIRRHIGYETYGVSLELIGDEEMQEINLESRGVDAPTDILSFPFSEYIEPGTLEPPQFDIP-DYYQLGDLLVDVPYVMRRCQEDKEYYEQLDDSDDEEEEDERGVSGAMARIYDAEERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEILAEL 229          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|762123667|ref|XP_011444821.1| (PREDICTED: putative ribonuclease [Crassostrea gigas])

HSP 1 Score: 116.316 bits (290), Expect = 2.903e-27
Identity = 62/195 (31.79%), Postives = 104/195 (53.33%), Query Frame = 0
Query:  212 TIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPG-IPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRG 405
            T+   N Q+ + L+   L +Q+  + ++ G   +D+S+     + I + N +YRGK+  TD+L+FPF+E   PG +PTS+       V DLGD+ + +PY+  QC+R+  +                        +Q+ LP +V HG+ HL+G+DHET++ Y EM  +E  +L+EF K   +TG +   P +  G
Sbjct:    2 TLLFENLQKVVPLNRIRLKSQINILRKLFGVKSYDLSVTCLTSQEIAKINAQYRGKKEPTDVLAFPFYENLVPGRLPTSQEHG----VLDLGDIYLGIPYIYHQCKRNNQN------------------------IQEVLPVMVTHGICHLIGYDHETEEQYKEMYAKESVILSEFNK---ATGFN-CTPLLQVG 164          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|1072233838|gb|OEU18568.1| (zincin, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 116.316 bits (290), Expect = 6.943e-27
Identity = 72/198 (36.36%), Postives = 109/198 (55.05%), Query Frame = 0
Query:  208 KPLGTIQIRNSQRTI-ALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGE-----VKD---LGDMIVSVPYVQRQCQRD----------QADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEF 386
             P G + I N Q++I  ++ D +   +  I +++G   +DV++ L +D  +RE N   RG  + TDILSFPFH+   P    +++ A   E     + D   LGDM++ VPYV R+CQ D            D  + G     G+RG  GAMA V   + R+  L++HG+LHL+G+DH  D+DY EMV+ E+ +L E 
Sbjct:   12 NPPGCVSIYNDQKSIKGINEDAISDTISKISKLIGYDTYDVTVLLVDDEEMRETNLESRGIDSPTDILSFPFHQ---PNFTANDNEAGLLEEPEFDIPDYYTLGDMVICVPYVIRRCQEDILALGDDNDYDDDESDVGGVENDGDRGVCGAMADVRDPEKRIRMLLVHGMLHLVGYDHIEDEDYIEMVEREEEILKEI 206          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|818350940|gb|KKQ32596.1| (hypothetical protein US49_C0006G0047 [candidate division TM6 bacterium GW2011_GWF2_37_49])

HSP 1 Score: 113.235 bits (282), Expect = 2.429e-26
Identity = 67/178 (37.64%), Postives = 101/178 (56.74%), Query Frame = 0
Query:  213 IQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKF 390
            I I+N QR I +D+  LHAQ + IL ++  +D D+++ LT ++SI   N+++R K  ATDILSFPFH    PG    +    + + K+LGD+I+S+ +VQ+       D  EK    W+              +Q  L  L+ HG+ HL+G DH TD +YNEM+K E R+L   K ++
Sbjct:    2 ILIKNRQRKIKVDVKKLHAQAQKILGVLDYADFDLNILLTTNKSIHAINNQFRNKDKATDILSFPFHPNLKPG---QKIKVTSPDDKNLGDIIISLEHVQK-------DAAEK----WNR------------TLQHHLTALLAHGIAHLIGHDHHTDNEYNEMLKLEKRLLKSVKLEY 153          
BLAST of EWM30489.1 vs. NCBI_GenBank
Match: gi|405973345|gb|EKC38064.1| (Putative metalloprotease C21orf57 [Crassostrea gigas])

HSP 1 Score: 111.694 bits (278), Expect = 3.455e-25
Identity = 59/187 (31.55%), Postives = 100/187 (53.48%), Query Frame = 0
Query:  220 RTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPG-IPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRG 405
            + + L+   L +Q+  + ++ G   +D+S+     + I + N +YRGK+  TD+L+FPF+E   PG +PTS+       V DLGD+ + +PY+  QC+R+  +                        +Q+ LP +V HG+ HL+G+DHET++ Y EM  +E  +L+EF K   +TG +   P +  G
Sbjct:   39 KVVPLNRIRLKSQINILRKLFGVKSYDLSVTCLTSQEIAKINAQYRGKKEPTDVLAFPFYENLVPGRLPTSQEHG----VLDLGDIYLGIPYIYHQCKRNNQN------------------------IQEVLPVMVTHGICHLIGYDHETEEQYKEMYAKESVILSEFNK---ATGFN-CTPLLQVG 193          
The following BLAST results are available for this feature:
BLAST of EWM30489.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113153|gb|EWM30489.1|0.000e+0100.00rrna maturation factor [Nannochloropsis gaditana][more]
gi|676378931|ref|XP_009032744.1|5.362e-4242.39hypothetical protein AURANDRAFT_18863 [Aureococcus... [more]
gi|219109735|ref|XP_002176621.1|1.563e-3540.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|873233558|emb|CEM03215.1|5.526e-3442.78unnamed protein product [Vitrella brassicaformis C... [more]
gi|298711736|emb|CBJ32782.1|2.367e-3239.46conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210528867|dbj|GAX12510.1|9.464e-2937.81hypothetical protein FisN_24Hh086 [Fistulifera sol... [more]
gi|762123667|ref|XP_011444821.1|2.903e-2731.79PREDICTED: putative ribonuclease [Crassostrea giga... [more]
gi|1072233838|gb|OEU18568.1|6.943e-2736.36zincin, partial [Fragilariopsis cylindrus CCMP1102... [more]
gi|818350940|gb|KKQ32596.1|2.429e-2637.64hypothetical protein US49_C0006G0047 [candidate di... [more]
gi|405973345|gb|EKC38064.1|3.455e-2531.55Putative metalloprotease C21orf57 [Crassostrea gig... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna129rna129Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications