rna1286, rna1286 (mRNA) Nannochloropsis gaditana

Overview
Namerna1286
Unique Namerna1286
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1464
Alignment locationCM002457.1:240769..241830 +

Link to JBrowse

Properties
Property NameValue
Productribonucleoprotein LSM
Orig transcript idgnl|cribi|Naga_100042g3.5664.mrna
Orig protein idgnl|cribi|Naga_100042g3.5664
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:240769..241830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g3gene1240Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1286rna1286-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29417.1cds1284Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1286 ID=rna1286|Name=rna1286|organism=Nannochloropsis gaditana|type=mRNA|length=1464bp
ATGGATGAGCACAGTGTCGGCGCGCTTTTCTCGGCCGCCAAGCAAGGACG
TGTCGAAGAGCTGGCCTCCCTGCTGGACGAACATCCAGAGCTGGTCCATG
CACGGAGCGATCCAGCCCACCACCACACCCTTCTTATCCTCGCCGCGTGG
CACGGCCGTACGTCAGTTGCTGCGTTATTGCTGGACAGGGGGGCGGACCC
AAACGCGGTCAATTTGGAAGGGCGGACGCCGCTCTGGTTTTCCTGCTGCG
GGGGTCATGTGGAAACGGCCGCTTTGCTTCTCTCACGCGGCGCCAAGCCC
AGTGTGCGCAAGGAGGGGGGCTCAACCTCCCTCATGGCGGCCGCGTGGAC
AGGACACCTACCCGTGGCCCGCCTCATCCTTGACCATGCCGCCCGCGGTT
CGGAAGGGGACGGCGTTCCCGTAGCACCGCACGACGAAGTCCGGCGTTTG
TTGGACGAGCAGAACAAGGACGGATGCTCGGGTCTTTGGTTCGCGGCTGG
CCATGGGCGGGCGTCGATGGTCCGTCTGTTGTTGAGTCGTGGAGCGGATT
TCCTCCAGGCGGATTGCGACGGGTACACCGCCTTGCACGTGGCACGTCTC
CGAGGCTACGACGACTGTGCCCTACTCTTGGAGGAGACGGAGCGGGCCTA
CTGGCTTTACCAAGCGCGTCGGCTGTTTGACGACACGGCGACCCTCGCCA
GCCTCCCCCGGGCAGGGACGCGTGCGTGCTTCCAGCGGCGCCGTCAACAA
TTGACGCCGAATTATCTTCGGATCCGGGCAGAACTGGGGGAGAAATTCCC
GTCCCCGCGGGTCTTGAACCAGGAGGTGAAGGGCGAGCTTGGATCGGAGC
ATAGGGAGGAAGCGCATGGATACAGGTGTCCTTCTCCTTTTTCTCCGGCC
GAGGAACTCTCGGAAGCGGGGTTGGAAGGTGCAAGCTGCGACTGCAAGTA
CCTGGATGGTCGCAGGAGCAGCGCCCGGAAGAGGATGCGTGAGGATCCTC
ACGCGGCTGTTTCCCGTGACAATGCCGTTTCCCCTCCCTGTCCGTCTTCC
ACCAATCCCTGCTTCGTTGCCGCCGCCTCCTCCTCTTCCTTCTCCTCTTC
CTCCTCCTCCGTATCAAGCGCGGGCGAGGAGGATCAAGAGGCGTTCGCAC
GTGGGGGAGGGATGGATCCGGGTCGGGCCGGCACTCGGACACGGGGCAGC
AAGAGGAAACGGTCGAATTGCCATCCTTTCGCCTTGGCCCACTCCTCCAC
GTCTTCCTCGGACACGTCCTGCATGGAGGCCGCAGGGGCGGCCACCCCCA
CAGCCACGAAATCCATCCCCACGTCCCTTGCCGAGGCGGCCGCAAAGGCG
GCGGCAGCGGAGGAGCGTCAGGAAGTGCTGCAGTATGTGGTCCAGGACCT
CAAGAGTGAGCTCTTTGTCGAGCTGGTGGGTTTCATTACCGCGGCGGCCC
CGCAGCATCCATGA
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protein sequence of rna1286

>rna1286-protein ID=rna1286-protein|Name=rna1286|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRT
GAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTP
APTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRG
GVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQ
GFNKEEEMAKLSVKEEAGGEGGAVGSEGTGGAGGGGNDPGGEEV
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mRNA from alignment at CM002457.1:240769..241830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1286 ID=rna1286|Name=rna1286|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp|location=Sequence derived from alignment at CM002457.1:240769..241830+ (Nannochloropsis gaditana)
TGCACACAGGCACATCCCTTGAGTGGAGCCAGACGTGCAGCCTCGTCATC
GAACACGTCGAGGTCGAGAACCCCTGCCAATTTTGGGGCTCCCCCGATTG
GCTACTTCTTTTCGAcgtctcttttcttcttttcccctcagTGAAGACGC
CTTCTGTGGTTCCAAGTTTGGACAACTATGGGAACTCCAGGCAAGCTTAT
TGGCTCCGTTATCAGCCTTGTTTCGAACAAGGATATTCGGTACGAAGGTG
TCCTGTACGCAATTGACCAAGAAAAATCCAGCGTGACGCTTCAGTCCGTG
AAGTGCTTCGGAACTGAAGGCCGCACGGGCGCAGGACAAGAATACCTCCC
CGACGATAAAGTGTACGATTACATCCTGTTCGAGGCTTCGGATATCAAAG
ATTTGCACGTGCATGAAGCAGCCTCCGctccggcccctgccccAAGTCCC
GCCAAGGACGTGCCGTCATCGACTCCGGCGCCGACACAGCAACCGtcgca
gcagcaacaacccTTGACAAAGTCGGCTCCCCCCCAGcgacaacagcagc
agcaagcccgcccggcggcaggagggcggggcggcgcctcgagaggggga
cgaggaagctacggggggggccgtgggggggtgcgaggtcgggggggaag
ggagggcggaggggccttACCGGGCACTGGAGGGCATTTACTGGGTCGAC
GGGGCAAGACAGAGGGTGGGGCGTCGGGGGGACCGGAAAAGGGCCAAGGG
GAGTTTGACTTCGAGAGTGCGTTGCAAGGCTTcaacaaggaggaggagat
ggcgaagctgagcgtgaaggaggaggcaggcggggagggtggggccgTGG
GCTcggagggaacggggggggcaggcgggggagggaacgatCCCGGAGGT
GAAGAAGTATGACAAGTCCTCGTTTTTCGACGATTTGAGCACGGggccag
gggcggggggacgcCCGTccatggcggaggagcggaagaCCAATATGGAC
ACCTTTGGCGTCGCTGCCTTACACAACCCACAGCACCGGCGGTatggagg
gcgcgggggggg
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Coding sequence (CDS) from alignment at CM002457.1:240769..241830+

>rna1286 ID=rna1286|Name=rna1286|organism=Nannochloropsis gaditana|type=CDS|length=735bp|location=Sequence derived from alignment at CM002457.1:240769..241830+ (Nannochloropsis gaditana)
ATGGGAACTCCAGGCAAGCTTATTGGCTCCGTTATCAGCCTTGTTTCGAA
CAAGGATATTCGGTACGAAGGTGTCCTGTACGCAATTGACCAAGAAAAAT
CCAGCGTGACGCTTCAGTCCGTGAAGTGCTTCGGAACTGAAGGCCGCACG
GGCGCAGGACAAGAATACCTCCCCGACGATAAAGTGTACGATTACATCCT
GTTCGAGGCTTCGGATATCAAAGATTTGCACGTGCATGAAGCAGCCTCCG
ctccggcccctgccccAAGTCCCGCCAAGGACGTGCCGTCATCGACTCCG
GCGCCGACACAGCAACCGtcgcagcagcaacaacccTTGACAAAGTCGGC
TCCCCCCCAGcgacaacagcagcagcaagcccgcccggcggcaggagggc
ggggcggcgcctcgagagggggacgaggaagctacggggggggccgtggg
ggggtgcgaggtcgggggggaagggagggcggaggggccttACCGGGCAC
TGGAGGGCATTTACTGGGTCGACGGGGCAAGACAGAGGGTGGGGCGTCGG
GGGGACCGGAAAAGGGCCAAGGGGAGTTTGACTTCGAGAGTGCGTTGCAA
GGCTTcaacaaggaggaggagatggcgaagctgagcgtgaaggaggaggc
aggcggggagggtggggccgTGGGCTcggagggaacggggggggcaggcg
ggggagggaacgatCCCGGAGGTGAAGAAGTATGA
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Synonyms
Publications