EWM29417.1, cds1284 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|585111946|gb|EWM29417.1| (ribonucleoprotein LSM [Nannochloropsis gaditana]) HSP 1 Score: 474.552 bits (1220), Expect = 5.822e-169 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGGEGGAVGSEGTGGAGGGGNDPGGEEV 244
MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGGEGGAVGSEGTGGAGGGGNDPGGEEV
Sbjct: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGGEGGAVGSEGTGGAGGGGNDPGGEEV 244
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|553184567|ref|XP_005854112.1| (hypothetical protein NGA_0450300, partial [Nannochloropsis gaditana CCMP526] >gi|422294948|gb|EKU22247.1| hypothetical protein NGA_0450300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 237.654 bits (605), Expect = 2.621e-77 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLT 114
MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLT
Sbjct: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLT 114
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|219118947|ref|XP_002180240.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408497|gb|EEC48431.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 118.627 bits (296), Expect = 1.444e-28 Identity = 83/213 (38.97%), Postives = 111/213 (52.11%), Query Frame = 0
Query: 7 LIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYL----PDDKVYDYILFEASDIKDLHVHEA--------ASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGK---TEGGASGGPEKGQGEFDFESALQGFNK 204
LIG ISL+S K+IRYEGVLY+I+++ ++V LQ+V+ FGTEGR A +++L P D V+ +++F DIKDLHVHEA P P PA P PAPT P PP + +P A + A+ + G R RG GA PGTG LL R+ + TEG A P + +FDF+S L+ F K
Sbjct: 6 LIGKNISLISKKNIRYEGVLYSINEQNATVALQNVRSFGTEGRE-ATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAEAVTPAPPPPEPTSKPAVQAP--IPAPTHSP----------VPP--KPAATTKPEAAPQNSATIPQKSMERGHNDNRRPRG---KSGAAPGTGASLLNRKARGVVTEGDAVQPP---RDDFDFQSNLEQFKK 197
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|1210525205|dbj|GAX15964.1| (hypothetical protein FisN_22Hh186 [Fistulifera solaris]) HSP 1 Score: 114.005 bits (284), Expect = 1.172e-26 Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 0
Query: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYL---PDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEE 207
M P L+G ISLVS K+IRYEGVLY+I+++ ++V LQ+VK FGTEGR A + + P D V+ Y+LF DIKDLHVHE + P + + PA ++P + P+ + PP Q A+P + + GG G A PGTG LL R + G + P QGEFDF+S+L+ F ++ +
Sbjct: 1 MTNP--LLGKRISLVSKKNIRYEGVLYSINEQNATVALQNVKTFGTEGRELAEEGCIFVAPADTVHPYLLFRGQDIKDLHVHEQPAEEQPTQTTEPT--PTVPAVKEEP---KPPVATTKPPAAQPSNPAKPPQPTQPTKTTSENAGRGGEGRGNNNNRRARNSKAAPGTGASLLNRTARGVVGDTATP---QGEFDFQSSLEKFKEQSD 200
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|1210529960|dbj|GAX11493.1| (hypothetical protein FisN_22Lh186 [Fistulifera solaris]) HSP 1 Score: 112.849 bits (281), Expect = 3.973e-26 Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 0
Query: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYL---PDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSS--TPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEE 207
M P L+G ISLVS K+IRYEGVLY+I+++ ++V LQ+VK FGTEGR A + + P D V+ Y+LF DIKDLHVHE + P + + P+S T AP + QP + PQ Q PA + G G G R R + A PGTG LL R + G + P Q +FDF+S+L+ F ++ +
Sbjct: 1 MTNP--LLGKRISLVSKKNIRYEGVLYSINEQNATVALQNVKTFGTEGRELAEEGCIFVPPADTVHPYLLFRGQDIKDLHVHEQPAEEQPTHT-TETAPASPVTEAPKPPDAAATQPNKPAKTPQSTQ-----PAPTKTASENAGRGGEGRGNNINRRARNSK----AAPGTGASLLNRTARGVVGDTATP---QEDFDFQSSLEKFKEQSD 197
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|1173944129|gb|OQR92897.1| (hypothetical protein THRCLA_08587 [Thraustotheca clavata]) HSP 1 Score: 113.62 bits (283), Expect = 6.116e-26 Identity = 85/237 (35.86%), Postives = 109/237 (45.99%), Query Frame = 0
Query: 8 IGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAA-------------------------SAPAPAPSPAKDVPSSTPAPTQQ-----PSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPE-KGQGEFDFESALQGFNKEEEMAKLSV 213
IGS ISL+S DIRYEG+L+ ID +S V LQ+V+ FGTEGR P D V Y F+AS+IKDLHV EAA S P P+P P + PA + S QQ + K P Q+Q A P + S R +R E +PG GGHLL R+ + GG + E + +FDF L FNKE+E K+S+
Sbjct: 12 IGSRISLISKTDIRYEGLLFNIDTRQSMVALQNVRSFGTEGRRP--DHIPPSDTVLQYATFKASEIKDLHVCEAAAPMPPPPPMQYQPPPPMPRQPPVPESQPPLPPAPRAVSPKAAPASSTLLTPGAMSNAQQAVPKPLPVQQQSPASAVPELAN-VEPKQVQVNSTPSPRQPIRHEA--ESHRTIPGMGGHLLKRKERRIGGDTSMTESELAADFDFSVGLHDFNKEQEYNKMSM 243
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|325190131|emb|CCA24612.1| (predicted protein putative [Albugo laibachii Nc14]) HSP 1 Score: 110.153 bits (274), Expect = 7.663e-25 Identity = 76/228 (33.33%), Postives = 108/228 (47.37%), Query Frame = 0
Query: 8 IGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAP------APSPAKDVPSS--------TPAPTQQPSQQQQPLTK-SAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRR-GKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGG 219
IGS ISL++ DIRYE L+ ID ++ + ++V+ FGTEGR + P D + Y F+AS+IKDLHV EAA P P +P VP S T + ++ P+ K + P + P G A+R + + + + G +PG GGHLL R+ + G GEF+ E AL GF+KE+E KL+V E G
Sbjct: 40 IGSRISLITKTDIRYESYLFNIDTTQNMIVFRNVRSFGTEGR--RAEHIPPSDTILPYATFKASEIKDLHVCEAAPTPTPTSAQPRSPLRTNTVPPSSGNASSTETSLTSHSNAKAYTPIKKPESTPFKNSSMLLTP--GAAAAAARTHQDTQHVQSAHLESGASVKSGRTIPGMGGHLLKRKERRVPGDEKFTSAPSVGEFNIEQALTGFDKEKEFEKLTVDEAQGS 263
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|568046223|gb|ETM43342.1| (hypothetical protein L914_11161 [Phytophthora parasitica]) HSP 1 Score: 101.679 bits (252), Expect = 8.021e-22 Identity = 84/256 (32.81%), Postives = 110/256 (42.97%), Query Frame = 0
Query: 8 IGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAP-------------------------------------APAPSPAKDVP-SSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRR-GKTEGGASG---GPEKGQGEFDFESALQGFNKEEEMAKL--SVKEEAGG 219
+GS ISLVS DIRYEG L+ ID +S+V LQ+V+ FGTEGR + P + Y F+AS+IKDLHV EAA P + AP P P S + A QQ Q+ T++ +R Q AR +PG GGHLL R+ + GGA GP++ GEF+F L FNK++E +KL S K+E G
Sbjct: 21 LGSRISLVSKTDIRYEGFLFNIDTRQSTVALQNVRSFGTEGRRP--EHVPPSPHILQYATFKASEIKDLHVCEAAPQPPQPPQPPQPPQPPVQPPVQPPLPSGPPPPPITAPTPASAAPKPTLLTPGSVSSAQKQQTQIQEHTQTQNQSQRRSQTNNAR----------------------------------TIPGMGGHLLKRKERRVPGGADAAGVGPDEASGEFNFAEGLNDFNKQQEFSKLEESAKQEPKG 240
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|630026575|ref|XP_007835849.1| (hypothetical protein PFICI_09077 [Pestalotiopsis fici W106-1] >gi|573059426|gb|ETS79224.1| hypothetical protein PFICI_09077 [Pestalotiopsis fici W106-1]) HSP 1 Score: 101.293 bits (251), Expect = 6.946e-21 Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 0
Query: 6 KLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTG--AGQEYLPDDKVYDYILFEASDIKDLHVHEAASA 84
+ +GS ISL+S DIRY GVL+ I+ E+S+V+L++V+ FGTEGR G QE LP D+VY+YI+F SD+KDL + EAA A
Sbjct: 3 EFLGSRISLISKSDIRYSGVLHEINSEESTVSLENVRSFGTEGRRGGDPEQEILPSDQVYEYIVFRGSDVKDLRIEEAAPA 83
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|298706178|emb|CBJ49106.1| (Novel Sm-like protein with long N-and C-terminal domains [Ectocarpus siliculosus]) HSP 1 Score: 96.2857 bits (238), Expect = 8.757e-20 Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAA 82
G L+GS ISL+S KDIR+EG+L +D+E +SVTLQ+VK +GTEGR Q+ P D ++ + F DIKDLHVHE A
Sbjct: 3 GDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETA 80 The following BLAST results are available for this feature:
BLAST of EWM29417.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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