EWM29417.1, cds1284 (CDS) Nannochloropsis gaditana

Overview
NameEWM29417.1
Unique Namecds1284
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:240946..241680 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29417.1
Productribonucleoprotein LSM
Orig transcript idgnl|cribi|Naga_100042g3.5664.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:240946..241680 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR025762DFDF
IPR025609Lsm14_N
Homology
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|585111946|gb|EWM29417.1| (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 474.552 bits (1220), Expect = 5.822e-169
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGGEGGAVGSEGTGGAGGGGNDPGGEEV 244
            MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGGEGGAVGSEGTGGAGGGGNDPGGEEV
Sbjct:    1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGGEGGAVGSEGTGGAGGGGNDPGGEEV 244          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|553184567|ref|XP_005854112.1| (hypothetical protein NGA_0450300, partial [Nannochloropsis gaditana CCMP526] >gi|422294948|gb|EKU22247.1| hypothetical protein NGA_0450300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 237.654 bits (605), Expect = 2.621e-77
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLT 114
            MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLT
Sbjct:    1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLT 114          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|219118947|ref|XP_002180240.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408497|gb|EEC48431.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 118.627 bits (296), Expect = 1.444e-28
Identity = 83/213 (38.97%), Postives = 111/213 (52.11%), Query Frame = 0
Query:    7 LIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYL----PDDKVYDYILFEASDIKDLHVHEA--------ASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGK---TEGGASGGPEKGQGEFDFESALQGFNK 204
            LIG  ISL+S K+IRYEGVLY+I+++ ++V LQ+V+ FGTEGR  A +++L    P D V+ +++F   DIKDLHVHEA           P P   PA   P   PAPT  P           PP  +     +P A  +  A+   +    G     R RG     GA PGTG  LL R+ +   TEG A   P   + +FDF+S L+ F K
Sbjct:    6 LIGKNISLISKKNIRYEGVLYSINEQNATVALQNVRSFGTEGRE-ATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAEAVTPAPPPPEPTSKPAVQAP--IPAPTHSP----------VPP--KPAATTKPEAAPQNSATIPQKSMERGHNDNRRPRG---KSGAAPGTGASLLNRKARGVVTEGDAVQPP---RDDFDFQSNLEQFKK 197          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|1210525205|dbj|GAX15964.1| (hypothetical protein FisN_22Hh186 [Fistulifera solaris])

HSP 1 Score: 114.005 bits (284), Expect = 1.172e-26
Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 0
Query:    1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYL---PDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEE 207
            M  P  L+G  ISLVS K+IRYEGVLY+I+++ ++V LQ+VK FGTEGR  A +  +   P D V+ Y+LF   DIKDLHVHE  +   P  +       + PA  ++P   + P+  + PP  Q    A+P    +   +       GG   G           A PGTG  LL R  +   G +  P   QGEFDF+S+L+ F ++ +
Sbjct:    1 MTNP--LLGKRISLVSKKNIRYEGVLYSINEQNATVALQNVKTFGTEGRELAEEGCIFVAPADTVHPYLLFRGQDIKDLHVHEQPAEEQPTQTTEPT--PTVPAVKEEP---KPPVATTKPPAAQPSNPAKPPQPTQPTKTTSENAGRGGEGRGNNNNRRARNSKAAPGTGASLLNRTARGVVGDTATP---QGEFDFQSSLEKFKEQSD 200          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|1210529960|dbj|GAX11493.1| (hypothetical protein FisN_22Lh186 [Fistulifera solaris])

HSP 1 Score: 112.849 bits (281), Expect = 3.973e-26
Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 0
Query:    1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYL---PDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSS--TPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEE 207
            M  P  L+G  ISLVS K+IRYEGVLY+I+++ ++V LQ+VK FGTEGR  A +  +   P D V+ Y+LF   DIKDLHVHE  +   P  +  +  P+S  T AP    +   QP   +  PQ  Q     PA       + G  G   G     R R  +    A PGTG  LL R  +   G +  P   Q +FDF+S+L+ F ++ +
Sbjct:    1 MTNP--LLGKRISLVSKKNIRYEGVLYSINEQNATVALQNVKTFGTEGRELAEEGCIFVPPADTVHPYLLFRGQDIKDLHVHEQPAEEQPTHT-TETAPASPVTEAPKPPDAAATQPNKPAKTPQSTQ-----PAPTKTASENAGRGGEGRGNNINRRARNSK----AAPGTGASLLNRTARGVVGDTATP---QEDFDFQSSLEKFKEQSD 197          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|1173944129|gb|OQR92897.1| (hypothetical protein THRCLA_08587 [Thraustotheca clavata])

HSP 1 Score: 113.62 bits (283), Expect = 6.116e-26
Identity = 85/237 (35.86%), Postives = 109/237 (45.99%), Query Frame = 0
Query:    8 IGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAA-------------------------SAPAPAPSPAKDVPSSTPAPTQQ-----PSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRRGKTEGGASGGPE-KGQGEFDFESALQGFNKEEEMAKLSV 213
            IGS ISL+S  DIRYEG+L+ ID  +S V LQ+V+ FGTEGR        P D V  Y  F+AS+IKDLHV EAA                         S P   P+P    P + PA +        S  QQ + K  P Q+Q    A P         +    S    R  +R     E    +PG GGHLL R+ +  GG +   E +   +FDF   L  FNKE+E  K+S+
Sbjct:   12 IGSRISLISKTDIRYEGLLFNIDTRQSMVALQNVRSFGTEGRRP--DHIPPSDTVLQYATFKASEIKDLHVCEAAAPMPPPPPMQYQPPPPMPRQPPVPESQPPLPPAPRAVSPKAAPASSTLLTPGAMSNAQQAVPKPLPVQQQSPASAVPELAN-VEPKQVQVNSTPSPRQPIRHEA--ESHRTIPGMGGHLLKRKERRIGGDTSMTESELAADFDFSVGLHDFNKEQEYNKMSM 243          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|325190131|emb|CCA24612.1| (predicted protein putative [Albugo laibachii Nc14])

HSP 1 Score: 110.153 bits (274), Expect = 7.663e-25
Identity = 76/228 (33.33%), Postives = 108/228 (47.37%), Query Frame = 0
Query:    8 IGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAP------APSPAKDVPSS--------TPAPTQQPSQQQQPLTK-SAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRR-GKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEEAGG 219
            IGS ISL++  DIRYE  L+ ID  ++ +  ++V+ FGTEGR    +   P D +  Y  F+AS+IKDLHV EAA  P P      +P     VP S        T   +   ++   P+ K  + P +       P  G    A+R  + +       +      + G  +PG GGHLL R+  +  G          GEF+ E AL GF+KE+E  KL+V E  G 
Sbjct:   40 IGSRISLITKTDIRYESYLFNIDTTQNMIVFRNVRSFGTEGR--RAEHIPPSDTILPYATFKASEIKDLHVCEAAPTPTPTSAQPRSPLRTNTVPPSSGNASSTETSLTSHSNAKAYTPIKKPESTPFKNSSMLLTP--GAAAAAARTHQDTQHVQSAHLESGASVKSGRTIPGMGGHLLKRKERRVPGDEKFTSAPSVGEFNIEQALTGFDKEKEFEKLTVDEAQGS 263          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|568046223|gb|ETM43342.1| (hypothetical protein L914_11161 [Phytophthora parasitica])

HSP 1 Score: 101.679 bits (252), Expect = 8.021e-22
Identity = 84/256 (32.81%), Postives = 110/256 (42.97%), Query Frame = 0
Query:    8 IGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAASAP-------------------------------------APAPSPAKDVP-SSTPAPTQQPSQQQQPLTKSAPPQRQQQQQARPAAGGRGGASRGGRGSYGGGRGGVRGRGGREGGGALPGTGGHLLGRR-GKTEGGASG---GPEKGQGEFDFESALQGFNKEEEMAKL--SVKEEAGG 219
            +GS ISLVS  DIRYEG L+ ID  +S+V LQ+V+ FGTEGR    +   P   +  Y  F+AS+IKDLHV EAA  P                                     + AP P    P S + A  QQ   Q+   T++   +R Q   AR                                   +PG GGHLL R+  +  GGA     GP++  GEF+F   L  FNK++E +KL  S K+E  G
Sbjct:   21 LGSRISLVSKTDIRYEGFLFNIDTRQSTVALQNVRSFGTEGRRP--EHVPPSPHILQYATFKASEIKDLHVCEAAPQPPQPPQPPQPPQPPVQPPVQPPLPSGPPPPPITAPTPASAAPKPTLLTPGSVSSAQKQQTQIQEHTQTQNQSQRRSQTNNAR----------------------------------TIPGMGGHLLKRKERRVPGGADAAGVGPDEASGEFNFAEGLNDFNKQQEFSKLEESAKQEPKG 240          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|630026575|ref|XP_007835849.1| (hypothetical protein PFICI_09077 [Pestalotiopsis fici W106-1] >gi|573059426|gb|ETS79224.1| hypothetical protein PFICI_09077 [Pestalotiopsis fici W106-1])

HSP 1 Score: 101.293 bits (251), Expect = 6.946e-21
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 0
Query:    6 KLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTG--AGQEYLPDDKVYDYILFEASDIKDLHVHEAASA 84
            + +GS ISL+S  DIRY GVL+ I+ E+S+V+L++V+ FGTEGR G    QE LP D+VY+YI+F  SD+KDL + EAA A
Sbjct:    3 EFLGSRISLISKSDIRYSGVLHEINSEESTVSLENVRSFGTEGRRGGDPEQEILPSDQVYEYIVFRGSDVKDLRIEEAAPA 83          
BLAST of EWM29417.1 vs. NCBI_GenBank
Match: gi|298706178|emb|CBJ49106.1| (Novel Sm-like protein with long N-and C-terminal domains [Ectocarpus siliculosus])

HSP 1 Score: 96.2857 bits (238), Expect = 8.757e-20
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 0
Query:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGAGQEYLPDDKVYDYILFEASDIKDLHVHEAA 82
            G L+GS ISL+S KDIR+EG+L  +D+E +SVTLQ+VK +GTEGR    Q+  P D ++  + F   DIKDLHVHE A
Sbjct:    3 GDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHETA 80          
The following BLAST results are available for this feature:
BLAST of EWM29417.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111946|gb|EWM29417.1|5.822e-169100.00ribonucleoprotein LSM [Nannochloropsis gaditana][more]
gi|553184567|ref|XP_005854112.1|2.621e-77100.00hypothetical protein NGA_0450300, partial [Nannoch... [more]
gi|219118947|ref|XP_002180240.1|1.444e-2838.97predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210525205|dbj|GAX15964.1|1.172e-2637.14hypothetical protein FisN_22Hh186 [Fistulifera sol... [more]
gi|1210529960|dbj|GAX11493.1|3.973e-2638.21hypothetical protein FisN_22Lh186 [Fistulifera sol... [more]
gi|1173944129|gb|OQR92897.1|6.116e-2635.86hypothetical protein THRCLA_08587 [Thraustotheca c... [more]
gi|325190131|emb|CCA24612.1|7.663e-2533.33predicted protein putative [Albugo laibachii Nc14][more]
gi|568046223|gb|ETM43342.1|8.021e-2232.81hypothetical protein L914_11161 [Phytophthora para... [more]
gi|630026575|ref|XP_007835849.1|6.946e-2155.56hypothetical protein PFICI_09077 [Pestalotiopsis f... [more]
gi|298706178|emb|CBJ49106.1|8.757e-2055.13Novel Sm-like protein with long N-and C-terminal d... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1286rna1286Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications