rna1284, rna1284 (mRNA) Nannochloropsis gaditana

Overview
Namerna1284
Unique Namerna1284
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2334
Alignment locationCM002457.1:237592..238224 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100042g6.5651.mrna
Orig protein idgnl|cribi|Naga_100042g6.5651
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:237592..238224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g6gene1238Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1284rna1284-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29404.1cds1282Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1284 ID=rna1284|Name=rna1284|organism=Nannochloropsis gaditana|type=mRNA|length=2334bp
ACAAGGTCCTCCGCACCCACACGGCACCATTGTCCACGGCATCGTTGACA
TCAGCAGCCCATGCCTGTGTCCACTGTACAGCTGGGATGAAGGAGGCAAC
CAACATATCACAGATATGTGGCTTGCCCGCACATGCGTCCTTCCCTCTCC
TCAGCGACGTTCGTAGCCCGTTATGTCTTAGGTTACTCCGTTGTTAATGC
GACGCTCGGTCGGGCAGGACAAAGTCACAATATTCACTCGCAGAGGGGCC
AAGATACGAGCGTGTCGCTGGCTATGGCCACTCGTCAGCAGCGTTTTGTA
ATGATGGGCAACCCAAATGCCCAAGAAGGAATATATTACTACTGGCGTTA
TTTGAACTGGGTGTATGATACTCCATCGCCCTACCACCTGAGCTAATTTT
ATGCCGTATATCACCTCTCTACATGGCGGGACATACGTGCCCGGCTCGAG
ATTCTTACAAGTATTCCTATATATGAGGTTGTTGCGTGCAGATTACTACA
TCTCAAGTGCTATATTGGCTTTATTTTTCCTTCTTCTCTTGTGTCACAGG
ACCTGGAAAGCCACCTAGGAGGTCTAAATAGCTTCAACTTCTTTTAATTT
TTCCGAATTCTGTTCGACCGCTTTCACTAGCATGTTACCATTCGTGCGTG
GCGGTAGCGTTCTCTTCCTCGCTCTGGTGTTGAGCGTGCTTCTCGAGCAT
GTAGCACATGCATTCCTGCCTCTGCCGAACTGTGTCAAGCGGCAGACCTC
CCGACTCTCCGGTCTTCGATCCCGCCACTCCTTCCTGAAAGCTTTAGCCT
CTTCCTCTGACTCGACACATTTCGACTTCCTGGTGATCGGTGCCGGGAGT
GGTGGCATTGCCTCAGCCCGGCGTGCGGCCTCATACGGTGTCAAAGTCGC
CGTCGTGGAAAAAAAAGCCCTGGGGGGCACCTGTGTGAATGTGGGCTGCG
TCCCGAAGAAAGTCATGTGGAACGCCGCGCACGTCCGGGAGATCATGCTG
GGCGCCAAGAACTTTGGGTTTGACGTGGACGGGCATGACGTGGGCTTCGA
TTGGCCCATGCTGAAGAAGGCGCGTGACGACTACGTCTCTCGGCTCAACG
GGATCTATGCCAAGAACCTGGCTGCCTCAGAAGTCGCTCTGTTGGAAGGT
GCCGCCTCCTTTTCAGGCCCCAAAAGCTTGCGGATCGGATCGAAGGAGTA
CACAGCGGAGCACATCCTGATTGCCGTCGGGGGGCAGCCGCGGATGCTCG
ACATCCCCGGAGCGCAGGAGCATGCGATTACCAGCGACGGCTTCTTCGAG
CTCGCCGAGCAGCCGAAGCGGGTGGGGGTGGTGGGGGGTGGCTACATCGC
CGTGGAGTTGGCCGGTGTCCTCCATGAGCTTGGGAGCCAGACGACCATCA
TTTGCCGCGGGGACGGCGTCCTCCGGGGCTTCGACGAGCTGATCTCCACC
ACGCTGGTGGAGGAGATGAAGAAAGCGGGGATGGCCTTCAAACACGACGC
CACCCCCAAGGCGATCCGGAAGGAGGCGGAAGGCTTGATCGTGGAGCTGG
AGGAGGGGGGCACAGTGGGTCCCTTTGATACGGTCCTACTCGCCACGGGG
CGGGTCACCGCCATCGATTCCTTGGGCTTGGCAGAGGCGGGGGTGGAGAC
GGACAAGCGGGGAAACGTGCTGGTGGATGAATACCAGAACACGAACGTGG
GGGGGGTATACGCCCTGGGGGACGTGTGCGGGCGCGTGCAATTGACGCCC
ATGGCCATCGCAGCCGGACGTCGACTGGCTGATCGGCTTTTCGGTTCCCT
CCCTGAGGCGAAGGCGGACTACGACGATGTGCCCACGGTGGTCTTCTCGC
ACCCGCCCATCGGTACCGTGGGCCTGACGGAGGCGCAGGCCAAGGAGGAG
TACGGGGAAGGAAACGTGCGGGTATACAGCAGCAAGTTTGTGAACCTCTT
CTACGGCCCCTGGCGCCTGGCCCCGGAGGAGAAACCCAAGACCGCGATGA
AGATGGTGTGCGTGGGGGAGGAGGAGCGGGTAGTGGGCCTTCATGTGATC
GGGATGGGTGCGGACGAGATGCTACAGGGCTTTGCCGTGGCCGTCAAAAT
GGGGGCTACCAAGGCAGATTTCGACGCCTGCGTCGCCTTGCACCCCACAG
CCGCGGAGGAGCTGGTCACCCTGAGCCCGTGGGGCCTGAGGGGGAAGAGA
AGTCGATAGAGAGGTTGTGGAGGACGGCTGCGTGCATAAGATGAGAGTGG
AACGGGAAGTGAGATGGGGCCACTAGGTGGCATCTAGCCGTCGGGTTGAC
TTGAAAGAAAAAAACTTTGATGAGGGCTTCGGAT
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protein sequence of rna1284

>rna1284-protein ID=rna1284-protein|Name=rna1284|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MDVENLVEVHMDDGKGDANSGRPREWKERCKGSESSNRKILGSTVSHKAL
MVFEHLGGIRMRKLTTRGQPSCPSPYTFDPLRGMGSRVAAGPWVVAGGVS
SPGSPPAEKHQRVAALSAHLKRILSAKTDSRKGSCSEIGEALALSVGHVS
VLHLKEKNSAPCDLRFAHAPLLCPCFVRHRCVSPWWPF
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mRNA from alignment at CM002457.1:237592..238224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1284 ID=rna1284|Name=rna1284|organism=Nannochloropsis gaditana|type=mRNA|length=633bp|location=Sequence derived from alignment at CM002457.1:237592..238224- (Nannochloropsis gaditana)
ATGGATGTTGAAAATTTAGTTGAAGTGCACATGGATGATGGAAAGGGGGA
CGCGAATTCGGGCAGGCCGAGAGAATGGAAGGAGAGATGTAAGGGGAGCG
AAAGCAGCAATAGAAAGATTCTAGGCTCCACAGTGTCACATAAAGCCTTG
ATGGTATTTGAACATTTAGGAGGGATAAGGATGAGGAAACTGACGACCAG
GGGGCAGCCGTCGTGCCCCTCGCCATACACGTTCGATCCACTGCGCGGTA
TGGGGTCGAGGGTGGCGGCCGGGCCATGGGTTGTTGCAGGCGGAGTATCG
AGCCCTGGCTCCCCCCCCGCGGAAAAACACCAGCGTGTAGCTGCTCTTAG
CGCACACCTCAAAAGAATATTGTCAGCAAAGACGGACAGGTCGGAGGAAA
AGCGAGGGAGCGAGGACACATGACCGCGTTTGCTCAACGAAAATAAGCAA
GGGAGTAGGAAAGGAAGCTGCTCAGAGATAGGAGAGGCCTTGGCCTTATC
AGTAGGACATGTATCGGTGCTACATTTGAAAGAGAAGAACAGCGCACCAT
GCGATCTCCGCTTTGCGCACGCGCCATTGCTTTGTCCATGCTTCGTTCGT
CATCGATGCGTCTCCCCGTGGTGGCCCTTCTAA
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Coding sequence (CDS) from alignment at CM002457.1:237592..238224-

>rna1284 ID=rna1284|Name=rna1284|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at CM002457.1:237592..238224- (Nannochloropsis gaditana)
TAGGAAAGGAAGCTGCTCAGAGATAGGAGAGGCCTTGGCCTTATCAGTAG
GACATGTATCGGTGCTACATTTGAAAGAGAAGAACAGCGCACCATGCGAT
CTCCGCTTTGCGCACGCGCCATTGCTTTGTCCATGCTTCGTTCGTCATCG
ATGCGTCTCCCCGTGGTGGCCCTTCTAAATGGATGTTGAAAATTTAGTTG
AAGTGCACATGGATGATGGAAAGGGGGACGCGAATTCGGGCAGGCCGAGA
GAATGGAAGGAGAGATGTAAGGGGAGCGAAAGCAGCAATAGAAAGATTCT
AGGCTCCACAGTGTCACATAAAGCCTTGATGGTATTTGAACATTTAGGAG
GGATAAGGATGAGGAAACTGACGACCAGGGGGCAGCCGTCGTGCCCCTCG
CCATACACGTTCGATCCACTGCGCGGTATGGGGTCGAGGGTGGCGGCCGG
GCCATGGGTTGTTGCAGGCGGAGTATCGAGCCCTGGCTCCCCCCCCGCGG
AAAAACACCAGCGTGTAGCTGCTCTTAGCGCACACCTCAAAAGAATATTG
TCAGCAAAGACGGACAGTAGGAAAGGAAGCTGCTCAGAGATAGGAGAGGC
CTTGGCCTTATCAGTAGGACATGTATCGGTGCTACATTTGAAAGAGAAGA
ACAGCGCACCATGCGATCTCCGCTTTGCGCACGCGCCATTGCTTTGTCCA
TGCTTCGTTCGTCATCGATGCGTCTCCCCGTGGTGGCCCTTCTAAATGGA
TGTTGAAAATTTAGTTGAAGTGCACATGGATGATGGAAAGGGGGACGCGA
ATTCGGGCAGGCCGAGAGAATGGAAGGAGAGATGTAAGGGGAGCGAAAGC
AGCAATAGAAAGATTCTAGGCTCCACAGTGTCACATAAAGCCTTGATGGT
ATTTGAACATTTAGGAGGGATAAGGATGAGGAAACTGACGACCAGGGGGC
AGCCGTCGTGCCCCTCGCCATACACGTTCGATCCACTGCGCGGTATGGGG
TCGAGGGTGGCGGCCGGGCCATGGGTTGTTGCAGGCGGAGTATCGAGCCC
TGGCTCCCCCCCCGCGGAAAAACACCAGCGTGTAGCTGCTCTTAGCGCAC
ACCTCAAAAGAATATTGTCAGCAAAGACGGACAG
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Synonyms
Publications