EWM29404.1, cds1282 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29404.1
Unique Name	cds1282
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002457.1:237836..238224 -
Alignment location	CM002457.1:237592..237769 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29404.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100042g6.5651.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:237836..238224 -
CM002457.1	supercontig	CM002457.1:237592..237769 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM29404.1 vs. NCBI_GenBank
Match: gi|585111933|gb|EWM29404.1| (hypothetical protein Naga_100042g6 [Nannochloropsis gaditana])

HSP 1 Score: 384.8 bits (987), Expect = 3.134e-135
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0

Query:    1 MDVENLVEVHMDDGKGDANSGRPREWKERCKGSESSNRKILGSTVSHKALMVFEHLGGIRMRKLTTRGQPSCPSPYTFDPLRGMGSRVAAGPWVVAGGVSSPGSPPAEKHQRVAALSAHLKRILSAKTDSRKGSCSEIGEALALSVGHVSVLHLKEKNSAPCDLRFAHAPLLCPCFVRHRCVSPWWPF 188
            MDVENLVEVHMDDGKGDANSGRPREWKERCKGSESSNRKILGSTVSHKALMVFEHLGGIRMRKLTTRGQPSCPSPYTFDPLRGMGSRVAAGPWVVAGGVSSPGSPPAEKHQRVAALSAHLKRILSAKTDSRKGSCSEIGEALALSVGHVSVLHLKEKNSAPCDLRFAHAPLLCPCFVRHRCVSPWWPF
Sbjct:    1 MDVENLVEVHMDDGKGDANSGRPREWKERCKGSESSNRKILGSTVSHKALMVFEHLGGIRMRKLTTRGQPSCPSPYTFDPLRGMGSRVAAGPWVVAGGVSSPGSPPAEKHQRVAALSAHLKRILSAKTDSRKGSCSEIGEALALSVGHVSVLHLKEKNSAPCDLRFAHAPLLCPCFVRHRCVSPWWPF 188

The following BLAST results are available for this feature:

BLAST of EWM29404.1 vs. NCBI_GenBank

BLAST of EWM29404.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585111933\|gb\|EWM29404.1\|	3.134e-135	100.00	hypothetical protein Naga_100042g6 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1284	rna1284	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications