rna1282, rna1282 (mRNA) Nannochloropsis gaditana

Overview
Namerna1282
Unique Namerna1282
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length819
Alignment locationCM002457.1:233067..235038 -

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Properties
Property NameValue
Product3-ketoacyl- mitochondrial
Orig transcript idgnl|cribi|Naga_100042g8.5639.mrna
Orig protein idgnl|cribi|Naga_100042g8.5639
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:233067..235038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g8gene1236Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1282rna1282-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29392.1cds1280Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1282 ID=rna1282|Name=rna1282|organism=Nannochloropsis gaditana|type=mRNA|length=819bp
ATGAGGACAAGAAGATTCAGCGGCCTCGTCTTTGTGGGCGTCATGTCAGG
CTTCTTGCTGGACTGTCGAGTACGGGGATTCGTACCTGCCACTCCGATCC
TTCCATCCAGCGCACAAGTCTGCCGTCACTGGAACAGTGTCACTCCTCGC
CCGGGCGCCCTTCCTCCCTACGATGCCCCCTACTCCCAGCCTGAGGAGGA
AAAGAACTTCTGGGGGAATGACTACGTGCCAAAGCAACGACACCCGGGAA
CCATGCCACCGGGTACACGTCTGGAAGACAAGCCCATCGAGGAGTTATCC
CCCGTCTCCAACATCCCTTACCCGCATTTCCAAGAGTGGCCATTTCACTA
TCGGTTCCCAGCCTACCAACCCCGGCGCTTGGATTTTATCGAATGGATGA
CACAACGAGGCCTGATGGTAGAAGACGACGGGGATACACGCGGGGTCCGG
TTTTTGGGTCGAAAGCGACGCTTTCGCGCGCAAAAAGCGCAGGCAGACAA
GGCCGCCGCCGAGGGGAGTGACCCGATGACTCCGGACGAGAGAAAGCAAG
CGATGGAGGGCATTGACGGGGACTACTGGCGCTCGGAGGGCGCAGAATTG
ATCGAACCAGAGCCTTACCTCTTCGAAATGGCCAAACATAAACGGGAGCG
TGTCCCTTACATTGTGACGGTTCGAGAGGCCAAAGCGGCGAAATTAGCGG
CCGAAGCTGCGGCGGGAGGGGGGGAGGTTATCCCGGGGACGGGAAAGGGG
GGAGGGGGAGTGGAGAAAACTGCCAAAGGAGGAAAGAAGGCCAAGCAGCC
ACCATCCGCTGAAATCTAA
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protein sequence of rna1282

>rna1282-protein ID=rna1282-protein|Name=rna1282|organism=Nannochloropsis gaditana|type=polypeptide|length=406bp
MSASSFAARKGLFIVGAKRTPFGAFGGKLKNFSATELAYLASKAALCQAK
LDPSAVNVVYAGNVIQSSNDACYLARHMGLKAGVPQHVPALTINRLCGSG
FETVIMGCEAMELGQASVALAAGTENMSAAPFVVDGNSVRWGVPLGKGPE
MKDSLWAGLTDSLAGTPMGITAENLGAKYGITRQECDEFGLRSQHLWAKA
QERGALQAEIVPVEVKTKKGIDLVTVDEHPRPQVELAKMSKLNPVFKKDG
LVTAANASGIADGAGALVLATEDTVHAHKLEPLARVVAWSRVGCDPSIMG
IGPVEAIRGALSVSGVALADLDRIEINEAFAAQFLACAKELGLDMSKTNV
HGGAIALGHPLAASGSRIVAHLANGLKGQQGGKKGYVMGSACIGGGQGIA
VLLQAV
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mRNA from alignment at CM002457.1:233067..235038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1282 ID=rna1282|Name=rna1282|organism=Nannochloropsis gaditana|type=mRNA|length=1972bp|location=Sequence derived from alignment at CM002457.1:233067..235038- (Nannochloropsis gaditana)
CGACCGAGCGTCGCATTAACAACGGAGTAACCTAAGACATAACGGGCTAC
GAACGTCGCTGAGGAGAGGGAAGGACGCATGTGCGGGCAAGCCACATATC
TGTGATATGTTGGTTGCCTCCTTCATCCCAGCTGTACAGTGGACACAGGC
ATGGGCTGCTGATGTCAACGATGCCGTGGACAATGGTGCCGTGTGGGTGC
GGAGGACCTTGTCAACTGGCTTTCCAACTTGCAGCACGGTGCCAGGAGGA
ACGCGGCGCCTCTGCCCTCTTTGACAAAAGTTCTTCAACATGCGTTTTCT
TTTGGGAAGCCTGTTTGCAGTGCTCCTGTTTGAAAGCGTCATCTTATCGT
CCATATCTACTCGCATCCATGACATGATGGCTTAGTCTTCTTTGTTCTTT
TTACCAGTTCATGAAGTCTCATTTTATGGCCTTCCTCAGCCTTGCCACAG
CTAGAAGACGGGCTCTTCAGGAGAGGCACCATCAATATGTCTGCCTCATC
TTTTGCTGCCCGTAAGGGACTTTTCATTGTCGGTGCTAAACGCACGCCGT
TCGGTAGGTGCATATCGTTAAGTGTGCCCTAACATGTGTGCATGCGATCC
CATAAAGACGTTTTTTCTCCCTTTCCTTCACTCTGCCTCATCGTTAGGCG
CTTTTGGAGGTAAACTTAAGAACTTTTCCGCCACCGAACTTGCCTATTTG
GCCTCTAAAGCGGCTCTGTGCCAAGCAAAGCTTGATCCTAGCGCGGTCAA
TGTCGTGTACGCAGGGAACGTTATTCAGTCTTCCAATGACGCATGTTACC
TTGCCAGGCACATGGGCTTGAAAGCCGGCGTCCCCCAACATGTCCCTGCA
TTGACGATCAACCGCTTGTGTGGCAGTGGCTTTGAAACGGTCATCATGGG
TTGTGAAGCCATGGAGCTCGGCCAAGCCTCGGTTGCCCTGGCGGCAGGCA
CGGAGAACATGTCGGCCGCACCCTTTGTAGTCGACGGGAACAGTGTGCGC
TGGGGGGTACCCTTGGGGAAAGGACCCGAAATGAAGGATTCCCTGTGGGC
TGGTCTCACGGATTCGTTGGCTGGCACGCCCATGGGAATCACGGCGGAGA
ACCTGGGTGCCAAGTACGGAATTACCCGGCAGGAATGCGACGAATTTGGC
CTTCGCTCTCAGCACTTATGGGCCAAGGCCCAAGAAAGGGGCGCCCTCCA
GGCGGAGATCGTGCCAGTGGAGGTAAAGACGAAGAAGGGCATCGACTTGG
TCACCGTGGACGAGCACCCGCGGCCGCAGGTGGAGCTGGCCAAGATGTCC
AAACTCAACCCGGTGTTTAAAAAAGACGGGCTGGTGACAGCGGCCAACGC
CAGTGGGATCGCCGACGGGGCCGGGGCCCTGGTCCTTGCCACGGAGGACA
CCGTGCACGCCCACAAGCTGGAGCCTTTGGCCAGGGTGGTTGCCTGGTCG
CGGGTGGGCTGCGATCCCAGCATCATGGGGATCGGACCTGTGGAGGCGAT
CCGTGGGGCCCTCTCTGTCTCGGGCGTGGCCTTGGCGGACCTGGATCGGA
TCGAGATCAACGAGGCCTTTGCCGCCCAGTTCCTCGCCTGCGCCAAGGAG
TTGGGGCTGGACATGAGCAAGACGAACGTGCACGGAGGGGCGATCGCCTT
GGGCCACCCCTTGGCCGCCTCTGGCTCGAGGATTGTAGCCCACTTGGCGA
ATGGGTTGAAGGGCCAGCAGGGGGGAAAGAAAGGCTATGTGATGGGAAGC
GCCTGCATCGGGGGCGGCCAGGGCATCGCCGTCTTGCTCCAAGCGGTGTG
AGAGGCGAGCAGAGGGGGGAGGGGTTAAGAGGGAGGAGGGGGAGGGCAGG
CATGAAGGATGGTTACAGGAGGGGGAGGAATGGACAGGGAGGGTGGAGAC
AGGGGGAGGGAGGCTTCCCGGATACCAATTTTGCAAAGAAAGAAGAAACT
GAGCGTCCCTGTAGATCAAGAA
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Coding sequence (CDS) from alignment at CM002457.1:233067..235038-

>rna1282 ID=rna1282|Name=rna1282|organism=Nannochloropsis gaditana|type=CDS|length=2442bp|location=Sequence derived from alignment at CM002457.1:233067..235038- (Nannochloropsis gaditana)
GCGCTTTTGGAGGTAAACTTAAGAACTTTTCCGCCACCGAACTTGCCTAT
TTGGCCTCTAAAGCGGCTCTGTGCCAAGCAAAGCTTGATCCTAGCGCGGT
CAATGTCGTGTACGCAGGGAACGTTATTCAGTCTTCCAATGACGCATGTT
ACCTTGCCAGGCACATGGGCTTGAAAGCCGGCGTCCCCCAACATGTCCCT
GCATTGACGATCAACCGCTTGTGTGGCAGTGGCTTTGAAACGGTCATCAT
GGGTTGTGAAGCCATGGAGCTCGGCCAAGCCTCGGTTGCCCTGGCGGCAG
GCACGGAGAACATGTCGGCCGCACCCTTTGTAGTCGACGGGAACAGTGTG
CGCTGGGGGGTACCCTTGGGGAAAGGACCCGAAATGAAGGATTCCCTGTG
GGCTGGTCTCACGGATTCGTTGGCTGGCACGCCCATGGGAATCACGGCGG
AGAACCTGGGTGCCAAGTACGGAATTACCCGGCAGGAATGCGACGAATTT
GGCCTTCGCTCTCAGCACTTATGGGCCAAGGCCCAAGAAAGGGGCGCCCT
CCAGGCGGAGATCGTGCCAGTGGAGGTAAAGACGAAGAAGGGCATCGACT
TGGTCACCGTGGACGAGCACCCGCGGCCGCAGGTGGAGCTGGCCAAGATG
TCCAAACTCAACCCGGTGTTTAAAAAAGACGGGCTGGTGACAGCGGCCAA
CGCCAGTGGGATCGCCGACGGGGCCGGGGCCCTGGTCCTTGCCACGGAGG
ACACCGTGCACGCCCACAAGCTGGAGCCTTTGGCCAGGGTGGTTGCCTGG
TCGCGGGTGGGCTGCGATCCCAGCATCATGGGGATCGGACCTGTGGAGGC
GATCCGTGGGGCCCTCTCTGTCTCGGGCGTGGCCTTGGCGGACCTGGATC
GGATCGAGATCAACGAGGCCTTTGCCGCCCAGTTCCTCGCCTGCGCCAAG
GAGTTGGGGCTGGACATGAGCAAGACGAACGTGCACGGAGGGGCGATCGC
CTTGGGCCACCCCTTGGCCGCCTCTGGCTCGAGGATTGTAGCCCACTTGG
CGAATGGGTTGAAGGGCCAGCAGGGGGGAAAGAAAGGCTATGTGATGGGA
AGCGCCTGCATCGGGGGCGGCCAGGGCATCGCCGTCTTGCTCCAAGCGGT
GTGAATGTCTGCCTCATCTTTTGCTGCCCGTAAGGGACTTTTCATTGTCG
GTGCTAAACGCACGCCGTTCGGCGCTTTTGGAGGTAAACTTAAGAACTTT
TCCGCCACCGAACTTGCCTATTTGGCCTCTAAAGCGGCTCTGTGCCAAGC
AAAGCTTGATCCTAGCGCGGTCAATGTCGTGTACGCAGGGAACGTTATTC
AGTCTTCCAATGACGCATGTTACCTTGCCAGGCACATGGGCTTGAAAGCC
GGCGTCCCCCAACATGTCCCTGCATTGACGATCAACCGCTTGTGTGGCAG
TGGCTTTGAAACGGTCATCATGGGTTGTGAAGCCATGGAGCTCGGCCAAG
CCTCGGTTGCCCTGGCGGCAGGCACGGAGAACATGTCGGCCGCACCCTTT
GTAGTCGACGGGAACAGTGTGCGCTGGGGGGTACCCTTGGGGAAAGGACC
CGAAATGAAGGATTCCCTGTGGGCTGGTCTCACGGATTCGTTGGCTGGCA
CGCCCATGGGAATCACGGCGGAGAACCTGGGTGCCAAGTACGGAATTACC
CGGCAGGAATGCGACGAATTTGGCCTTCGCTCTCAGCACTTATGGGCCAA
GGCCCAAGAAAGGGGCGCCCTCCAGGCGGAGATCGTGCCAGTGGAGGTAA
AGACGAAGAAGGGCATCGACTTGGTCACCGTGGACGAGCACCCGCGGCCG
CAGGTGGAGCTGGCCAAGATGTCCAAACTCAACCCGGTGTTTAAAAAAGA
CGGGCTGGTGACAGCGGCCAACGCCAGTGGGATCGCCGACGGGGCCGGGG
CCCTGGTCCTTGCCACGGAGGACACCGTGCACGCCCACAAGCTGGAGCCT
TTGGCCAGGGTGGTTGCCTGGTCGCGGGTGGGCTGCGATCCCAGCATCAT
GGGGATCGGACCTGTGGAGGCGATCCGTGGGGCCCTCTCTGTCTCGGGCG
TGGCCTTGGCGGACCTGGATCGGATCGAGATCAACGAGGCCTTTGCCGCC
CAGTTCCTCGCCTGCGCCAAGGAGTTGGGGCTGGACATGAGCAAGACGAA
CGTGCACGGAGGGGCGATCGCCTTGGGCCACCCCTTGGCCGCCTCTGGCT
CGAGGATTGTAGCCCACTTGGCGAATGGGTTGAAGGGCCAGCAGGGGGGA
AAGAAAGGCTATGTGATGGGAAGCGCCTGCATCGGGGGCGGCCAGGGCAT
CGCCGTCTTGCTCCAAGCGGTGTGAATGTCTGCCTCATCTTTTGCTGCCC
GTAAGGGACTTTTCATTGTCGGTGCTAAACGCACGCCGTTCG
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Synonyms
Publications