rna1281, rna1281 (mRNA) Nannochloropsis gaditana

Overview
Namerna1281
Unique Namerna1281
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2420
Alignment locationCM002457.1:231877..232948 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100042g9.5654.mrna
Orig protein idgnl|cribi|Naga_100042g9.5654
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:231877..232948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g9gene1235Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1281rna1281-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29407.1cds1279Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1281 ID=rna1281|Name=rna1281|organism=Nannochloropsis gaditana|type=mRNA|length=2420bp
ACCTTCCCCGGTCGTGGCGTGCCTTTCGTCCACCATACACAAACACATCA
TTACGATGAAAAAAGGTACTCAGCCCAACCACCGGGGCTGCACGATTCCC
TTCGTCATTTATGGATGGGTGTTTAATGAACAGCGGGGAGCCGGCAAAGC
AAGCAGGATCGCCAAGACGGATGGTAAAATATATGCTCAGGAACTTACCG
TGCAACAGAACACTCACTTCACGAATGCCTTTTGGGGTACGGCAGGCTTG
TGGAGGTATTTCAATTCATGCGCTTGCTTCCTCGACAGCCTGTGCGACGG
ACAAAAAGAAGCGTTTTTGTGGTTGCCACGACCTCCTATTTCCTAGCCTC
AACATCAACACAGAATTATTCCAAAACTCCTCCACTTGACTTCCCTTCTC
GTTTTGCTGCAGCCAGTACAAACAACAAACAAAATCAGGCACACCTTACG
TGTGGATCTCGTTTGCTATCTGCGATGCTGAGCAACGCCGAAGCCCGTGG
GATATTGAAAGAAAATGTTGGACACAGTCAGGCCATGATCAGTCTCCTCA
AAGAGGTTTATGGAGACTGGGAAGATCCCTCTTTTCATTTCCCAAAGCCT
ATGCCAGCCACGGAGGCGGGTCCTTCCATGGTCCCGTACGGGAAGGGATT
ATGCCAACGACGTTATTTGTGGACCGACGCGTGGGGAGTGCTTTGCTTTG
TGGGCCTGGCCATGCGGTGCAATACCTCCAGAAACGGGGGAAAATACAGG
AGAGAACGCTTGCTGGTGACGGCAGAGTCCTTGGTGGGGGCCGTGCACGC
AACACTCGGCCAACCGCGGGGCCCGGCGTACACAATGCTACCCGGAAAGG
GAAGACAGGTGGGGTCGGAGCTGGCTGAGGAGAAGGAGGGCGGAGAGATG
GCTGAGATGGCACAGACGCCGAATGAATACGTAGGTTTGCGGATCGGGAA
AACGCGGGCGATGCCGGGGGGCAAGAGCGACGCTGGCATGGCTTTTGACG
GCATGTATTTCCACTACTTGGATAAGTGGATCTTTGCCTTGCTCCGCCTT
TCTCAAGCCTGCGAGGCTTTTCGCGGGTCGGGCCAGGGAGACAAGTACCT
GTCGCAAGCAGAGACATTGATCAAGACGATCCATCCGTATTTTGTGCGCC
GTTCGCAAGGCTCGCGTCGTCCGCCTGGTGGGCCAAGCGCTCGGCCGGTG
AGGGGGGGGGGAGGCGAGCGGGGGGCTCCCCGTGGAGTCTACTGGAAGGT
AGGCACCGACATGTCGGTGATTTCCGGGTTGGAGGATATGGGCCCGTCCG
AGGACGCGTTGAGTGGGTGGGTGGTTTACTCATTGGTCATGCAGGAGGGC
GAACGCCGGGGAGAGCAGGGACGGGGGACTCGTACTGGGGATCCTCACAC
AAGAGGACAGCGCCAGGCAGAGGCTATCCAGAAGGGAAGAGGGGGTCGCA
AGGAACTGGCGGAGCAAGCCGGTGGTAGTCAGGAACGCTCGCTGAGTCCC
ATTGTTGCCGAACAGGCGGATATGGAAGTGTTGGCAGCGGCGTACATGCA
GGGTGGGAGGGGGTTGCGGGTTTCTAGTGACGGTTTAGGGTGGGGCCTGT
TGTGTTGGAAAGCGCAAATGCTGGGTGCATGGGCCGAGCCCGTGAGGACA
CGTCTAGCGGTGTTGGCGCCAGAGGCCTTGGAGGTGTCGAGGGGGATGCT
CCTGCCCTTTCGGTTGTACGGGGCGCTGATGGGAGGGCGGTTGGTGGAAG
GGAAGGACAACGTGAGAATGGCGGCGGAGAAGGCGTTGGACGTGGTGGTC
CCTGTGGAATTGCGGGAGAAGGGGAACGAGCACAGCTGTATCAACAAGGT
GATGCTCGCGGCGGCCTTGGATCCCTTGGCGTTTGCAAGACTCGAAAGCG
AAGGTCGATTGGCGTGGCCAGGACCCGGGGTAGGGGAGCGCGTGTAGCTG
AGTGGATTGAGTCTAGAGGAATTTTCAGAGGACTAAACTTTGTTGCGGTC
CATCGCTAAAGGGTTCACGTAAGGCTTCACGTCGGCGAAAAAAAGCGTGT
GTAATAAGAGCAGAGAAAGAGGATGCGTGAGTGCGAGGCATGATGCAAGG
CTAGCAGAAAAGCCGAGGAGGGGCAACAATATTAAGAGGCGAATGCAACA
TATGTGCAAGCAAGCCCTTCGAAAATGATAAGATCGAATGGAAGACCTAT
CGGAGGTTTGACGATGCAAAGCGACGATTCTCAGTCGATTGTTCAAAGTC
TCGGATTTCATTCCTTCTCCACTTCTGGATCCGGGCGATCCCAATTTCAG
ATTGGAAACAAAATTAGTGGCACGCATTTCTACAATCGTGTTGATGCCGG
TCATATGCATGCGTACGAGTGAGACCCCTCTCACTCGCCATCTGCCTTGT
CTTTTCACATGGATTTCTAC
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protein sequence of rna1281

>rna1281-protein ID=rna1281-protein|Name=rna1281|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MRTRRFSGLVFVGVMSGFLLDCRVRGFVPATPILPSSAQVCRHWNSVTPR
PGALPPYDAPYSQPEEEKNFWGNDYVPKQRHPGTMPPGTRLEDKPIEELS
PVSNIPYPHFQEWPFHYRFPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVR
FLGRKRRFRAQKAQADKAAAEGSDPMTPDERKQAMEGIDGDYWRSEGAEL
IEPEPYLFEMAKHKRERVPYIVTVREAKAAKLAAEAAAGGGEVIPGTGKG
GGGVEKTAKGGKKAKQPPSAEI
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mRNA from alignment at CM002457.1:231877..232948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1281 ID=rna1281|Name=rna1281|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp|location=Sequence derived from alignment at CM002457.1:231877..232948+ (Nannochloropsis gaditana)
ATGAGGACAAGAAGATTCAGCGGCCTCGTCTTTGTGGGCGTCATGTCAGG
CTTCTTGCTGGACTGTCGAGTACGGGTACGTGCGTTGCCAGACCGCGTCt
attttttctccctttcccagcgTTTCTCGAATAAACAAGTGGCCGATGCA
GCACATAATTATTCGAGTAGTGTGTGTACCTTATTCTATGTCCATGTCTT
TCTGGTGCGGAAGGTACATGTGCTGACGCTACGGTTTCTATATCCTTGCT
TAACCTGTACCCTTACTTTCGGCCTAACATTTGCTCCTTGACACCTCACA
CATCGTGCTCAACTCAACCACTTCACAGGGATTCGTACCTGCCACTCCGA
TCCTTCCATCCAGCGCACAAGTCTGCCGTCACTGGAACAGTGTCACTCCT
CGCCCgggcgcccttcctccctacgaTGCCCCCTACTCCCAgcctgagga
ggaaaagaactTCTGGGGGAATGACTACGTGCCAAAGCAACGACACCCGG
GAACCATGCCACCGGGTACACGTCTGGAAGACAAGCCCATCGAGGAGTTA
TCCCCCGTCTCCAACATCCCTTACCCGCATTTCCAAGAGTGGCCATTTCA
CTATCGGTTCCCAGCCTACCAACCCCGGCGCTTGGATTTTATCGAATGGA
TGACACAACGAGGCCTGATGGTAGAAGACGACGGGGATACACGCGGGGTC
CGGTTTTTGGGTCGAAAGCGACGCTTTCGCGCGCAAAAAGCGCAGGCAga
caaggccgccgccgaggGGAGTGACCCGATGACTCCGGACGAGAGAAAGC
AAGCGATGGAGGGCATTGACGGGGACTACTGGCGCTCGGAGGGCGCAGAA
TTGATCGAACCAGAGCCTTACCTCTTCGAAATGGCCAAACATAAACGGGA
GCGTGTCCCTTACATTGTGACGGTTCGAGAGGCCAAAGCGGCGAAATTAG
CGGCCGAAgctgcggcgggagggggggaggttatcccggggacgggaaag
gggggagggggagtggagaAAACTgccaaaggaggaaagaaggccaAGCA
GCCACCATCCGCTGAAATCTAA
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Coding sequence (CDS) from alignment at CM002457.1:231877..232948+

>rna1281 ID=rna1281|Name=rna1281|organism=Nannochloropsis gaditana|type=CDS|length=1638bp|location=Sequence derived from alignment at CM002457.1:231877..232948+ (Nannochloropsis gaditana)
ATGAGGACAAGAAGATTCAGCGGCCTCGTCTTTGTGGGCGTCATGTCAGG
CTTCTTGCTGGACTGTCGAGTACGGGGATTCGTACCTGCCACTCCGATCC
TTCCATCCAGCGCACAAGTCTGCCGTCACTGGAACAGTGTCACTCCTCGC
CCgggcgcccttcctccctacgaTGCCCCCTACTCCCAgcctgaggagga
aaagaactTCTGGGGGAATGACTACGTGCCAAAGCAACGACACCCGGGAA
CCATGCCACCGGGTACACGTCTGGAAGACAAGCCCATCGAGGAGTTATCC
CCCGTCTCCAACATCCCTTACCCGCATTTCCAAGAGTGGCCATTTCACTA
TCGGTTCCCAGCCTACCAACCCCGGCGCTTGGATTTTATCGAATGGATGA
CACAACGAGGCCTGATGGTAGAAGACGACGGGGATACACGCGGGGTCCGG
TTTTTGGGTCGAAAGCGACGCTTTCGCGCGCAAAAAGCGCAGGCAgacaa
ggccgccgccgaggGGAGTGACCCGATGACTCCGGACGAGAGAAAGCAAG
CGATGGAGGGCATTGACGGGGACTACTGGCGCTCGGAGGGCGCAGAATTG
ATCGAACCAGAGCCTTACCTCTTCGAAATGGCCAAACATAAACGGGAGCG
TGTCCCTTACATTGTGACGGTTCGAGAGGCCAAAGCGGCGAAATTAGCGG
CCGAAgctgcggcgggagggggggaggttatcccggggacgggaaagggg
ggagggggagtggagaAAACTgccaaaggaggaaagaaggccaAGCAGCC
ACCATCCGCTGAAATCTAAATGAGGACAAGAAGATTCAGCGGCCTCGTCT
TTGTGGGCGTCATGTCAGGCTTCTTGCTGGACTGTCGAGTACGGGGATTC
GTACCTGCCACTCCGATCCTTCCATCCAGCGCACAAGTCTGCCGTCACTG
GAACAGTGTCACTCCTCGCCCgggcgcccttcctccctacgaTGCCCCCT
ACTCCCAgcctgaggaggaaaagaactTCTGGGGGAATGACTACGTGCCA
AAGCAACGACACCCGGGAACCATGCCACCGGGTACACGTCTGGAAGACAA
GCCCATCGAGGAGTTATCCCCCGTCTCCAACATCCCTTACCCGCATTTCC
AAGAGTGGCCATTTCACTATCGGTTCCCAGCCTACCAACCCCGGCGCTTG
GATTTTATCGAATGGATGACACAACGAGGCCTGATGGTAGAAGACGACGG
GGATACACGCGGGGTCCGGTTTTTGGGTCGAAAGCGACGCTTTCGCGCGC
AAAAAGCGCAGGCAgacaaggccgccgccgaggGGAGTGACCCGATGACT
CCGGACGAGAGAAAGCAAGCGATGGAGGGCATTGACGGGGACTACTGGCG
CTCGGAGGGCGCAGAATTGATCGAACCAGAGCCTTACCTCTTCGAAATGG
CCAAACATAAACGGGAGCGTGTCCCTTACATTGTGACGGTTCGAGAGGCC
AAAGCGGCGAAATTAGCGGCCGAAgctgcggcgggagggggggaggttat
cccggggacgggaaaggggggagggggagtggagaAAACTgccaaaggag
gaaagaaggccaAGCAGCCACCATCCGCTGAAATCTAA
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Synonyms
Publications