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Properties
| Property Name | Value |
|---|
| Product | C2 membrane targeting protein |
| Orig transcript id | gnl|cribi|Naga_100042g19.5641.mrna |
| Orig protein id | gnl|cribi|Naga_100042g19.5641 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:206138..208369 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1272 ID=rna1272|Name=rna1272|organism=Nannochloropsis gaditana|type=mRNA|length=1627bp
GACATCAAAAGATGTTGCGTTGGAAAACAAAGAGTAGTCAATTCATGGCA
TGCAAGCAAGGGTCGTTCTAACACGTGGATATGGCCTTGTGGTGTGCTGG
AACTTGAGACATACCGATCAGTGCTAACTATTCCCGGCTAGAAGCGAGTA
GTACGTTGTCGCTGGCGTCAAATTTCTGCTACGCTTTCTCTTTCACCCTT
CAGCACCCCTAATAACTAAAATGAGCTAGCTGTAGACTGATTTCCAGGGA
TAAGGGTGAGAAATCCTTATGATTCTCTTGCTTACAAGTGCTTACACATA
TTGATAGGTCACTCTCGCAAGACTTCACGTCCTCTTGGTGCCTTCAACTG
CTCCCTTGATAGACCAGGACCGTATGGCCACATTACACATTTCTAACCTG
ACGCTAACCATCTACAACCACGGGATATTTGTTTTGATGTCCGCTGCTTT
ATCCTTTCTCTTGATAGTTTGGAGATTCTCCCTGGCTGAAGCGGGCCGAT
CTCACCATTTTGAAGGACCGTCTTCTAACCCCGTGAAGCCTCACAGTATA
ACTATCGTGGGTAGCGGCAACTTTGGATCCGCAATAGCCCGCCTTCTGGG
GCGAAATGTTTTGCGGTCGCCCAAACACTTCAGGTCGGAGGTGCGCATGT
GGGTCTTTGAGGAAGAGCTGGACGACGGGCGGAAACTCAGCGACGTCATC
AATGCTGATCACGAGAATGTAAAGTATTTGCCGGGCATACAACTACCTAC
AAACGTTCGTGCGGTCCCAGACCTAAGTGATGCTGTCCGAAATGCATCCA
TTGTCGTCTTTGTGCTACCGCATCAATTTCTTCCCGGCTTGCTCCCGCGG
ATCTCTTCATGCCTACACCGGGGGGCCATGGCTGTCTCCCTCGTCAAGGG
ACTGGACTTCGATGACGAAGGGCCCGTCCTTATCACGGACATGATCCGTG
AGGGTTTGGGTGAGGATGTCTCCGAAGTCTGTGTCTTGATGGGCGCCAAC
GTGGCGGATGAAATGGCCCGGGACGAATTTTGTGAGGCGACCTTGGGGTG
CCCCGATCCCGAAGGCGCCGGGGCGGTGCTTCAGCAGCTTTTCGATTGCC
CCACCTTCCGGGTGGAAGTAACCCCGGACCCGATCGGCGTGGAGCTCTGT
GGAGCCCTCAAGAATGTGGTGGCCTTGGCGGCCGGATTCTGCGATGGCTT
GGACTGGGGCGGGAATACCAAGGCAGCCATCATCCGGCGGGGCCTGGAGG
AAATGCGGTTATTCTGCAAATTGTTGCATCCCAGCGTCCGGGACATGACG
TTTTTCGAGAGCTGCGGGGTGGCAGATTTGATCACAACCTGCTACGGTGG
GAGGAACCGAAAATGCGCGGAAACGTTCGCCAGGGCGGGGGGTACCATGG
CTTGGGATGAGATTGAGAAAGAGGAGCTGGGGGGACAGCACTTGCAGGGA
CCTCAAACGACGTCGAAGCTACACAAAGTGCTCGAGCAGAAGAAGTGGCT
GAGTAGGTTCCCCCTCTTCCGGTCTGTGTACCAGATCGCCTACCAGGGAA
GGCCGCCCGCCACCTTGGTGCAGGATTTGTAACATGCGTGACTCGTAAAG
CAACAACCCAGGACATTCATAACCTTC back to topprotein sequence of rna1272 >rna1272-protein ID=rna1272-protein|Name=rna1272|organism=Nannochloropsis gaditana|type=polypeptide|length=397bp
MHQTTRSSRTALLHQVGHLPFSKKIPTFSPFRARLLRDRPTMHRNTHVVL
GRVFCVVALLTSSTGAQPLSGCGLGETRLYIQVHGTDKLTACTDYFDNVD
PYAIVSVGQDRLAVSKVTRTVDNEASPSWNQVLEFGCVESNTKLTFRVRD
QDYFGDEACLGPLRLMGPWPPSGRRQVLCESPAMDPVVAGTPGTGCISFT
LYYGLGLPSTIVSGDGTRTSTANTTSSLRPSTTPSLPSTLPSRPDTPSSP
LPSVVTPQANVSTSPAENSDPHVPPPPRAPSLPPSSQSSPSPSSTSPRPP
LVPSAPGMDHPSVAVRAPAPMGPEASKNTRHRSPKAALLAGGIISLVALV
GIAAAVAVTRRRRRRAAVHNQGLEVDGTESGVRGAGGSSALGSAEVL back to topmRNA from alignment at CM002457.1:206138..208369+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1272 ID=rna1272|Name=rna1272|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp|location=Sequence derived from alignment at CM002457.1:206138..208369+ (Nannochloropsis gaditana)
ACACCACAAGGCCATATCCACGTGTTAGAACGACCCTTGCTTGCATGCCA
TGAATTGACTACTCTTTGTTTTCCAACGCAACATCTTTTGATGTCGAATG
GACGACGTGGGACGATGGAATTGGTgacttggtggaggaaaaggttgCTT
CGGGAAAAGATATCTTCCGATCCGATGATGAGAGAGATATCATGCAGCAC
ACAACATTCGGGCACACGCGATGTTAGCGCGGCTTTCACGCGCAAAGGGA
TTGCGTCAGGACACGTGCCATGCATACTGCAAAGTCAATGAGCTTTTAAG
ATGACGCTTCCAGGACAAAGCTTTTTCAGTGCATGGTGTTGTGGAATTTT
CAATGCATCAAACTACAAGATCAAGCAGAACAGCCCTGCTTCATCAAGTT
GGTCACCTCCCTTTTTCTAAAAAAATCCCTACATTCTCACCATTCAGGGC
ACGGTTACTACGAGATAGGCCAACCATGCATCGCAACACTCATGTGGTTC
TTGGGAGAGTGTTTTGTGTCGTTGCATTGCTGACTTCGTCCACGGGCGCG
CAGCCTCTCTCTGGATGTGGGTTGGGCGAAACCCGGCTATATATCCAAGT
GCACGGCACTGATAAATTGACAGCATGCACGGACTATTTCGACAATGTGG
ATCCTTACGCAATTGTTAGTGTCGGTCAAGGTGCGTGAAATGACGGCAGG
GGTGTCTTGGGATGCCCTTTGTGCCGTGAGGAAGCTGGAGACAGAATCTa
tccatcgccttcttcccttgtcGATGTGTAATCGTACGCGCTCGTTGTCA
CTTTTTAAACTTACATATTCGATTGAACGATTTCGTTCATCCATTTTAGC
TTTTGGTGGAGGATTTCTCGCAATGCTGCAAGCCCTTTGATTAGTtttac
ttccctccctcccctctcccccgcgcAGACCGCCTCGCTGTCTCCAAAGT
GACAAGGACCGTTGACAACGAAGCTTCTCCCAGCTGGAACCAAGTTCTAG
AGTTCGGGTGCGTAGAGTCTAACACCAAACTCACCTTCCGAGTGCGCGAT
CAAGACTACTTCGGGGACGAGGCATGTCTGGGGCCTTTGCGCCTGAtggg
gccgtggccgcccTCCGGTCGTCGACAGGTCTTGTGCGAAAGCCCCGCCA
TGGACCCCGTCGTGGCCGGGACGCCTGGCACGGGTTGTATCTCCTTTACC
CTCTACTACGGCTTGGGTCTGCCTTCCACCATCGTCTCGGGGGACGGGAC
CCGGACCAGCACCGCCaacaccacgtcctccctccgcccctcgaccacgc
cctccctcccgtccaccttgccctcccgccctgacACCCCATcgtcgccc
cttccctccgtaGTCACGCCCCAGGCCAACGTCAGCACCTCCCCTGCCGA
GAACAGCGACCCTCACgttccaccccctccacgcgctcccagcctccctc
cctcctcccagtcctccccctctccctcctccacctcaccccgccccccg
ctcGTGCCATCGGCTCCGGGCATGGACCATCCGTCGGTGGCAGTGCGTGC
CCCGGCGCCCATGGGCCCGGAGGCGAGCAAAAACACAAGGCATCGCTCCC
CCAAGGCAGCCCTTCTAGCGGGAGGAATCATCTCGCTCGTGGCCCTGGTG
GGGATTGCCGCCGCGGTGGCGGTGACGCGCCGGCGGCGTCGACGGGCAGC
GGTGCACAACCAAGggctggaggtggatggGACGGAGAGTGGCGTccgcg
gggcagggggaagctCTGCCTTGGGGTCGGCCGAAGTGCTGTGAGCCCAA
CGGGGCTGCTTGCTGattgggaagaagggaagagtagagaggaaaaggca
acGCTGAAAGGCATAGGGCAAGAAGAACGTTGATTTTGACGTGTAGAACG
GGAGACAGGGGCCCATATTGCGTCCGAgcgatggatgtggaggggaaatg
gtGCCGGAGGCATCACTGCATGGGCGTCAAAGGACTAGATGCGGCGACCT
GCaacgagaagagggaggcgaagggagtaaggggacggaggcaggtgTGA
AAATTTTACAAGTACAAAGACTAGCGGCGAGAGAACACGGTACCATGTGG
GCAAGACGGGCATTGTGATGTGGGGACGGGTGGGTGTGAGAAAGCAACAG
ACACACGGGCGCCAAGAGGGGAGATGCTGCGAGAGAGGAGCAACGTTCAC
CAACAAAGAAGAATCTGGTGCATGTCATGTCT back to topCoding sequence (CDS) from alignment at CM002457.1:206138..208369+ >rna1272 ID=rna1272|Name=rna1272|organism=Nannochloropsis gaditana|type=CDS|length=2388bp|location=Sequence derived from alignment at CM002457.1:206138..208369+ (Nannochloropsis gaditana)
ATGCATCAAACTACAAGATCAAGCAGAACAGCCCTGCTTCATCAAGTTGG
TCACCTCCCTTTTTCTAAAAAAATCCCTACATTCTCACCATTCAGGGCAC
GGTTACTACGAGATAGGCCAACCATGCATCGCAACACTCATGTGGTTCTT
GGGAGAGTGTTTTGTGTCGTTGCATTGCTGACTTCGTCCACGGGCGCGCA
GCCTCTCTCTGGATGTGGGTTGGGCGAAACCCGGCTATATATCCAAGTGC
ACGGCACTGATAAATTGACAGCATGCACGGACTATTTCGACAATGTGGAT
CCTTACGCAATTGTTAGTGTCGGTCAAGACCGCCTCGCTGTCTCCAAAGT
GACAAGGACCGTTGACAACGAAGCTTCTCCCAGCTGGAACCAAGTTCTAG
AGTTCGGGTGCGTAGAGTCTAACACCAAACTCACCTTCCGAGTGCGCGAT
CAAGACTACTTCGGGGACGAGGCATGTCTGGGGCCTTTGCGCCTGAtggg
gccgtggccgcccTCCGGTCGTCGACAGGTCTTGTGCGAAAGCCCCGCCA
TGGACCCCGTCGTGGCCGGGACGCCTGGCACGGGTTGTATCTCCTTTACC
CTCTACTACGGCTTGGGTCTGCCTTCCACCATCGTCTCGGGGGACGGGAC
CCGGACCAGCACCGCCaacaccacgtcctccctccgcccctcgaccacgc
cctccctcccgtccaccttgccctcccgccctgacACCCCATcgtcgccc
cttccctccgtaGTCACGCCCCAGGCCAACGTCAGCACCTCCCCTGCCGA
GAACAGCGACCCTCACgttccaccccctccacgcgctcccagcctccctc
cctcctcccagtcctccccctctccctcctccacctcaccccgccccccg
ctcGTGCCATCGGCTCCGGGCATGGACCATCCGTCGGTGGCAGTGCGTGC
CCCGGCGCCCATGGGCCCGGAGGCGAGCAAAAACACAAGGCATCGCTCCC
CCAAGGCAGCCCTTCTAGCGGGAGGAATCATCTCGCTCGTGGCCCTGGTG
GGGATTGCCGCCGCGGTGGCGGTGACGCGCCGGCGGCGTCGACGGGCAGC
GGTGCACAACCAAGggctggaggtggatggGACGGAGAGTGGCGTccgcg
gggcagggggaagctCTGCCTTGGGGTCGGCCGAAGTGCTGTGAATGCAT
CAAACTACAAGATCAAGCAGAACAGCCCTGCTTCATCAAGTTGGTCACCT
CCCTTTTTCTAAAAAAATCCCTACATTCTCACCATTCAGGGCACGGTTAC
TACGAGATAGGCCAACCATGCATCGCAACACTCATGTGGTTCTTGGGAGA
GTGTTTTGTGTCGTTGCATTGCTGACTTCGTCCACGGGCGCGCAGCCTCT
CTCTGGATGTGGGTTGGGCGAAACCCGGCTATATATCCAAGTGCACGGCA
CTGATAAATTGACAGCATGCACGGACTATTTCGACAATGTGGATCCTTAC
GCAATTGTTAGTGTCGGTCAAGACCGCCTCGCTGTCTCCAAAGTGACAAG
GACCGTTGACAACGAAGCTTCTCCCAGCTGGAACCAAGTTCTAGAGTTCG
GGTGCGTAGAGTCTAACACCAAACTCACCTTCCGAGTGCGCGATCAAGAC
TACTTCGGGGACGAGGCATGTCTGGGGCCTTTGCGCCTGAtggggccgtg
gccgcccTCCGGTCGTCGACAGGTCTTGTGCGAAAGCCCCGCCATGGACC
CCGTCGTGGCCGGGACGCCTGGCACGGGTTGTATCTCCTTTACCCTCTAC
TACGGCTTGGGTCTGCCTTCCACCATCGTCTCGGGGGACGGGACCCGGAC
CAGCACCGCCaacaccacgtcctccctccgcccctcgaccacgccctccc
tcccgtccaccttgccctcccgccctgacACCCCATcgtcgccccttccc
tccgtaGTCACGCCCCAGGCCAACGTCAGCACCTCCCCTGCCGAGAACAG
CGACCCTCACgttccaccccctccacgcgctcccagcctccctccctcct
cccagtcctccccctctccctcctccacctcaccccgccccccgctcGTG
CCATCGGCTCCGGGCATGGACCATCCGTCGGTGGCAGTGCGTGCCCCGGC
GCCCATGGGCCCGGAGGCGAGCAAAAACACAAGGCATCGCTCCCCCAAGG
CAGCCCTTCTAGCGGGAGGAATCATCTCGCTCGTGGCCCTGGTGGGGATT
GCCGCCGCGGTGGCGGTGACGCGCCGGCGGCGTCGACGGGCAGCGGTGCA
CAACCAAGggctggaggtggatggGACGGAGAGTGGCGTccgcggggcag
ggggaagctCTGCCTTGGGGTCGGCCGAAGTGCTGTGA back to top
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