EWM29394.1, cds1270 (CDS) Nannochloropsis gaditana

Overview
NameEWM29394.1
Unique Namecds1270
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:206490..206817 +
Alignment locationCM002457.1:207066..207931 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29394.1
ProductC2 membrane targeting protein
Orig transcript idgnl|cribi|Naga_100042g19.5641.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:206490..206817 +
CM002457.1supercontigCM002457.1:207066..207931 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Homology
[Close]
BLAST of EWM29394.1 vs. NCBI_GenBank
Match: gi|585111923|gb|EWM29394.1| (C2 membrane targeting protein [Nannochloropsis gaditana])

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0 
Query:    1 MHQTTRSSRTALLHQVGHLPFSKKIPTFSPFRARLLRDRPTMHRNTHVVLGRVFCVVALLTSSTGAQPLSGCGLGETRLYIQVHGTDKLTACTDYFDNVDPYAIVSVGQDRLAVSKVTRTVDNEASPSWNQVLEFGCVESNTKLTFRVRDQDYFGDEACLGPLRLMGPWPPSGRRQVLCESPAMDPVVAGTPGTGCISFTLYYGLGLPSTIVSGDGTRTSTANTTSSLRPSTTPSLPSTLPSRPDTPSSPLPSVVTPQANVSTSPAENSDPHVPPPPRAPSLPPSSQSSPSPSSTSPRPPLVPSAPGMDHPSVAVRAPAPMGPEASKNTRHRSPKAALLAGGIISLVALVGIAAAVAVTRRRRRRAAVHNQGLEVDGTESGVRGAGGSSALGSAEVL 397
            MHQTTRSSRTALLHQVGHLPFSKKIPTFSPFRARLLRDRPTMHRNTHVVLGRVFCVVALLTSSTGAQPLSGCGLGETRLYIQVHGTDKLTACTDYFDNVDPYAIVSVGQDRLAVSKVTRTVDNEASPSWNQVLEFGCVESNTKLTFRVRDQDYFGDEACLGPLRLMGPWPPSGRRQVLCESPAMDPVVAGTPGTGCISFTLYYGLGLPSTIVSGDGTRTSTANTTSSLRPSTTPSLPSTLPSRPDTPSSPLPSVVTPQANVSTSPAENSDPHVPPPPRAPSLPPSSQSSPSPSSTSPRPPLVPSAPGMDHPSVAVRAPAPMGPEASKNTRHRSPKAALLAGGIISLVALVGIAAAVAVTRRRRRRAAVHNQGLEVDGTESGVRGAGGSSALGSAEVL
Sbjct:    1 MHQTTRSSRTALLHQVGHLPFSKKIPTFSPFRARLLRDRPTMHRNTHVVLGRVFCVVALLTSSTGAQPLSGCGLGETRLYIQVHGTDKLTACTDYFDNVDPYAIVSVGQDRLAVSKVTRTVDNEASPSWNQVLEFGCVESNTKLTFRVRDQDYFGDEACLGPLRLMGPWPPSGRRQVLCESPAMDPVVAGTPGTGCISFTLYYGLGLPSTIVSGDGTRTSTANTTSSLRPSTTPSLPSTLPSRPDTPSSPLPSVVTPQANVSTSPAENSDPHVPPPPRAPSLPPSSQSSPSPSSTSPRPPLVPSAPGMDHPSVAVRAPAPMGPEASKNTRHRSPKAALLAGGIISLVALVGIAAAVAVTRRRRRRAAVHNQGLEVDGTESGVRGAGGSSALGSAEVL 397
The following BLAST results are available for this feature:
BLAST of EWM29394.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111923|gb|EWM29394.1|0.000e+0100.00C2 membrane targeting protein [Nannochloropsis gad... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1272rna1272Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications