rna1265, rna1265 (mRNA) Nannochloropsis gaditana

Overview
Namerna1265
Unique Namerna1265
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2100
Alignment locationCM002457.1:182515..184474 -

Link to JBrowse

Properties
Property NameValue
Producttrna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Orig transcript idgnl|cribi|Naga_100042g30.5648.mrna
Orig protein idgnl|cribi|Naga_100042g30.5648
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:182515..184474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g30gene1219Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29401.1cds1263Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1265rna1265-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1265 ID=rna1265|Name=rna1265|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp
CGAGAAACGTCTGAGACGTGAGAGAAGCTCTCCCTTCCTCACCCGCCATA
AATCGTGTGGACTGTCACACCAGTGACCACATTCCCCGAAAGCGACGTCC
GTCTCATGCGTCTGGTTTGGTGAGGCAGGAAGAAATGTGTGCTACATGCT
GGGGGAGAGAGCTATAATTTAGAAATGTCTCACGGGATTGATTGTAAACG
ACTTGTTCGACATCAGGAGCTGCGTCAAGTCATCTGACTAATGGAAAGAC
TCGCCTCTTTGTCAGACGCCATAAAGGGTTCGGATGCATTTGCAACCAGG
AGAGAAGATGTATGAAATCGTGCATTTTTGGAGTACGCCATACTGACGAC
CCTGCACTTCTTTTTCCCCACGTCCGTCGCACCGTATCACAATCTAAGGG
GATAAAGGAGGCCTTCTTGCACTCTTTCGAAGTGACCGCGACGGCGACTC
TTTGCAGGAATAAGCGTTCAACAACACAACTACATACTTGTACAAGGTTT
CTGGCGCAGGAACATGGAAAATTTTAGGACTACGGTTTACTCTCTGGTAA
AAGAATGGAGTGATACCCAAGGCGTGGACCCCAACGTGGTTTTGATGAGC
GCAGGAGCTGCTACCTTGCTTGGGCTGGGGTTGATGGCCTCACATGCCTG
CGGAGGCAGCAACGGCTCCAAAAAGCGTGGCGGGCACAAGCATAAGAAGG
GCAAGTCCAAAAAGACGGAGGGAATGGGAGGGAACGGTGCTGGCGCCTCC
AAGCCCTTGCCGCCACCGCGACATCAAGCACAGCAGCCGTCGAAGGCAGG
GGCCACGAAGTCGGTGCAAGGAAAGGCGAAAAAACAGAGCGTGCCCACCC
CAGCGAGTGGGGCGCCCGCGGCCGCCATGGCAGCTGCCCGCAATGGTGTC
CACCCGGATCCAGGGGGGGAGGTGGGAAAGAACAAAAAGAAAAAGAACAA
GCACAAGAAAAAGGGTGCCCTGGAAGAAGGGGCAACGGGAGGGGGAAATT
CATCATCGCAGGCGAAGGAGCCGTCCATGGGGGGGAGACAAGCCCAGGGG
GAAGCGGGCCTGGCGAATTCGACCTTCGTCTACAATAACGACCGAGGGAC
GGTGGAGGAGGTAGGAAAGGGGGGATGGAGATGATAAGGAGGTCTAGGAG
GCGATAGTCTCAGGGAAGCTCTGTTGTCTTGACCCGCAAGATTCTTCTCA
CCTCATACGCCTTTGCCCCCCCCCTTTTTGTGACCGCAGTGGGAGGCCTT
CAACGACCCGGACGCTGGGTGGCGCGTGGTGACCAACAAGAGGAAGAGCA
AGGTCAAGAGGGAGGGAGCGGCCGAGGAAGGGGGGGAGGGACCTGTAGAA
GAGACGACGAGGACATCGGAATGATGTCGAGGATAAAGCAGCGGAGAAGG
ATGAACCATGAGTTTTTTGTACCAAATTTTTAGCGATAGGGAGAAAAAGA
CGAGAGTGAGAAGACGGTGAGGATTGGAAGGGACAGTGGGAAGCTTTGCA
CGTGTTGAGACTCGCTCTGCTTGCAAAGCGTCGGAGAAATTTTCTAACTT
TGGTTTGTTTTAATTTTGTACGGGATTCAAGGAGGGCAATATAGGGCGAT
AGAGTAATTGACCACTCACCTGTTGATAGATAGCGCCGGAGGTGAGAAAC
GTGGGAAGGAAGGAAATAGCAAGGGCGGGAAGCCAAAGCAAATCAGCAGT
AGTAGGCCCGCAGTCCTCATCTGTGGCATCAGGCCGCAGGAGGCGGGGGA
ATATGGGAGCGCGGCAAGCATGAACTGAACATAAGGTGGTTGGAAGGGGG
CAACAAAAGGGATGGAAGGAAGTCTGATACCCCTGCTCGTGGTCAGATTT
CCTTCAGGAAGGAGTCGGGGAGGGGGACGTGGGGGGTAAGAGGGAGGGAT
GCGGCGCGGTGCGCACTGCAGTGCACAGTGATTGCACCGTGTCGGGGTGT
TTCAGGCACCAGAGCGAAAACTAGGGGGGAAGAGCTCCATGAAACCTTCC
CAGCCCTCGAGTCGAATGTCAATTTCTGTACGACATCGGAACCAGCTAGA
AGCTCTCAGCCACGTTGCAAAAGAAGAAACAATTCTCTTTTAGCCCTTCT
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protein sequence of rna1265

>rna1265-protein ID=rna1265-protein|Name=rna1265|organism=Nannochloropsis gaditana|type=polypeptide|length=463bp
MAGTFIRNRLLPRVAVGLSGGVDSSVAALLLLEQGYEVIGVHMQNWDTTD
EAGASACPYTEDLRDAEAVSKQLGIPFHRVDFCRPYWTHVFTPFLEEYDK
GLTPNPDILCNREIKFDRFQGFARDVVGTPWIATGHYARLRHFPSLGPSL
PVGPLPSSTSEGGPRNPRACTGSHSSLPELCTGMDEAKDQSYFLSQVPTR
AFQHVLFPLGHLRKGQVRDMAHAAGLCTAEKKESMGICFVGKRRMGAFLP
EYLQPRAGTFVSVTTGEVLGTQEGALTLLTVGQGARIGGAEEKWFVCGKD
MEAGRIYVAPGTDHPALYCDWLLVAKEDFNWIGQAPWEMGKKHEDRSQPT
DRLPSTASPSVAFRCEYRARYRQPLAGCQVSTSSDHPGMLRVDFDVPQRG
VALSQTLALYAGERCLGGGAIVEVGPSYYAQGKRLPERRLTWAVSGGKRC
VAEARGGEESPRA
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mRNA from alignment at CM002457.1:182515..184474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1265 ID=rna1265|Name=rna1265|organism=Nannochloropsis gaditana|type=mRNA|length=1960bp|location=Sequence derived from alignment at CM002457.1:182515..184474- (Nannochloropsis gaditana)
ACGATTTGGTATCTGTGTCGTGAAACCAGCATCTGTTGTGATGCAGTCAT
GGAGATCTTGCTGCTCGCCAGCCATGCAAATACGATTCTCCACCCGCATC
CTATTCAACTTCACTTGGTCACTAATTTTACGGAACACAGGGGAAAGCTA
CGATGGTTGATTTTACATTTAAGATATTGCGCAGGCTTGCTCGTCGTGGA
TAGCTCGCCCTTCACAACAAGTTGAAGGGGTTAAGGGGGATGGTGGAGAA
GAGGGGGGTGGACCCCAATACTCTCCTTCCATCCTGCGCAGGAAGCCGGC
AAGTTTACTTACGTGTCGTCGGTGCATCCCGCAAATAATCGCAACATACT
GAAATTTTTTCTTTAGTATTTGTGAAATACTCTGGCCAGTGCCATGGCCG
GTACATTCATACGTAACCGGCTTCTTCCTCGAGTGGCAGTAGGCCTCTCT
GGCGGCGTCGACTCTTCAGTCGCAGCCTTGCTTCTGCTCGAACAAGGGTA
CGAAGTCATCGGCGTTCACATGCAAAATTGGGACACTACAGACGAGGCCG
GTGCAAGCGCATGCCCTTACACAGAGGACTTGAGAGATGCCGAAGCAGTG
AGCAAACAGCTGGGGATCCCATTCCACAGGGTCGATTTCTGCCGTCCGTA
TTGGACGCACGTGTTCACTCCGTTCTTGGAGGAGTATGACAAGGGTCTGA
CCCCAAATCCAGACATACTCTGCAATCGCGAGATCAAATTTGACCGGTTC
CAAGGATTTGCCCGGGACGTGGTAGGCACGCCCTGGATCGCGACGGGCCA
CTACGCCCGCCTTCGCCACTTCCCTTCGCTTGGCCCCTCCCTACCTGTTG
GCCCACTCCCGTCCTCCACTTCAGAAGGAGGGCCGCGCAATCCACGTGCA
TGCACCGGCTCGCATTCTTCCCTTCCGGAGCTGTGCACAGGGATGGACGA
GGCGAAGGACCAAAGCTACTTCCTCTCCCAGGTGCCGACCCGGGCTTTCC
AACACGTCCTCTTCCCGCTGGGACACCTCCGAAAGGGGCAAGTGCGCGAC
ATGGCGCATGCGGCGGGACTTTGCACGGCAGAGAAGAAGGAGAGCATGGG
CATATGCTTCGTAGGCAAGCGACGGATGGGCGCGTTTCTGCCCGAGTATC
TCCAGCCGCGGGCGGGGACCTTCGTGTCCGTGACCACGGGCGAGGTCCTG
GGTACGCAAGAGGGGGCTTTGACCCTGTTGACGGTCGGACAGGGGGCAAG
GATAGGGGGGGCAGAGGAGAAGTGGTTCGTGTGTGGGAAGGACATGGAGG
CAGGGAGGATATACGTGGCGCCCGGGACGGACCACCCCGCGTTGTACTGC
GACTGGCTCCTGGTGGCCAAGGAGGACTTCAATTGGATCGGACAAGCTCC
GTGGGAGATGGGGAAGAAGCATGAGGACAGGAGCCAGCCGACCGACCGCC
TGCCTTCCACAGCATCCCCCTCCGTCGCGTTTCGGTGCGAATATCGAGCC
CGATACCGGCAGCCCTTGGCAGGATGCCAGGTATCTACCTCCTCGGATCA
CCCCGGTATGTTGCGTGTGGACTTTGATGTGCCTCAGCGGGGGGTGGCCT
TGAGCCAAACACTGGCTTTGTACGCCGGTGAACGTTGTCTTGGAGGAGGG
GCAATTGTGGAGGTAGGGCCGAGCTACTACGCGCAGGGGAAGCGCCTGCC
GGAGAGGAGGTTGACATGGGCCGTATCTGGAGGGAAGCGATGTGTTGCAG
AGGCGAGGGGTGGGGAGGAATCACCCAGGGCCTGAAGGGCGAGGTGCGGG
CAGCGTGGAAGCTCGCAGACTCGCAGGCGGGAGGGGAGGGAGGGTGTTTG
TATGGAACCCGGCGTGGAGAAGCATGAAGTAACGTCGAATTCCGTTCCCG
CCCGGGAAAAGTACAGTTCAAGCTCGCAAGAAGGGCTAAAAGAGAATTGT
TTCTTCTTTT
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Coding sequence (CDS) from alignment at CM002457.1:182515..184474-

>rna1265 ID=rna1265|Name=rna1265|organism=Nannochloropsis gaditana|type=CDS|length=1392bp|location=Sequence derived from alignment at CM002457.1:182515..184474- (Nannochloropsis gaditana)
ATGGCCGGTACATTCATACGTAACCGGCTTCTTCCTCGAGTGGCAGTAGG
CCTCTCTGGCGGCGTCGACTCTTCAGTCGCAGCCTTGCTTCTGCTCGAAC
AAGGGTACGAAGTCATCGGCGTTCACATGCAAAATTGGGACACTACAGAC
GAGGCCGGTGCAAGCGCATGCCCTTACACAGAGGACTTGAGAGATGCCGA
AGCAGTGAGCAAACAGCTGGGGATCCCATTCCACAGGGTCGATTTCTGCC
GTCCGTATTGGACGCACGTGTTCACTCCGTTCTTGGAGGAGTATGACAAG
GGTCTGACCCCAAATCCAGACATACTCTGCAATCGCGAGATCAAATTTGA
CCGGTTCCAAGGATTTGCCCGGGACGTGGTAGGCACGCCCTGGATCGCGA
CGGGCCACTACGCCCGCCTTCGCCACTTCCCTTCGCTTGGCCCCTCCCTA
CCTGTTGGCCCACTCCCGTCCTCCACTTCAGAAGGAGGGCCGCGCAATCC
ACGTGCATGCACCGGCTCGCATTCTTCCCTTCCGGAGCTGTGCACAGGGA
TGGACGAGGCGAAGGACCAAAGCTACTTCCTCTCCCAGGTGCCGACCCGG
GCTTTCCAACACGTCCTCTTCCCGCTGGGACACCTCCGAAAGGGGCAAGT
GCGCGACATGGCGCATGCGGCGGGACTTTGCACGGCAGAGAAGAAGGAGA
GCATGGGCATATGCTTCGTAGGCAAGCGACGGATGGGCGCGTTTCTGCCC
GAGTATCTCCAGCCGCGGGCGGGGACCTTCGTGTCCGTGACCACGGGCGA
GGTCCTGGGTACGCAAGAGGGGGCTTTGACCCTGTTGACGGTCGGACAGG
GGGCAAGGATAGGGGGGGCAGAGGAGAAGTGGTTCGTGTGTGGGAAGGAC
ATGGAGGCAGGGAGGATATACGTGGCGCCCGGGACGGACCACCCCGCGTT
GTACTGCGACTGGCTCCTGGTGGCCAAGGAGGACTTCAATTGGATCGGAC
AAGCTCCGTGGGAGATGGGGAAGAAGCATGAGGACAGGAGCCAGCCGACC
GACCGCCTGCCTTCCACAGCATCCCCCTCCGTCGCGTTTCGGTGCGAATA
TCGAGCCCGATACCGGCAGCCCTTGGCAGGATGCCAGGTATCTACCTCCT
CGGATCACCCCGGTATGTTGCGTGTGGACTTTGATGTGCCTCAGCGGGGG
GTGGCCTTGAGCCAAACACTGGCTTTGTACGCCGGTGAACGTTGTCTTGG
AGGAGGGGCAATTGTGGAGGTAGGGCCGAGCTACTACGCGCAGGGGAAGC
GCCTGCCGGAGAGGAGGTTGACATGGGCCGTATCTGGAGGGAAGCGATGT
GTTGCAGAGGCGAGGGGTGGGGAGGAATCACCCAGGGCCTGA
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Synonyms
Publications