rna1264, rna1264 (mRNA) Nannochloropsis gaditana

Overview
Namerna1264
Unique Namerna1264
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1238
Alignment locationCM002457.1:180227..182546 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100042g31.5668.mrna
Orig protein idgnl|cribi|Naga_100042g31.5668
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:180227..182546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100042g31gene1218Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1264rna1264-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29421.1cds1262Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1264 ID=rna1264|Name=rna1264|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp
ATGAAGAAAAAGACGAAGAGCACCTCTTCGACACCGAAAGGGTGCGGAAA
GCGGCCGCACAAGGATGCGGAGCCGGCCCCAGATGGAACGGAGGCAGCAG
AGCTTTCATTGGCCTCTTCTTCTTCTTCCTCCGACGACGACTACACGGAG
GACGAAATCAAGCTCTACGGGACAGGGGAGGTCGGTAGCGGGAGTAGCAG
CAGCAGTAGTAGCGATGAAGAAGACCCAAAAAACTCCACTACTGGTGGCG
CAAATTCTACAATTTCTAAAAACTACAAAGAGAAGGAGAGGTCGATAAAG
GAGCACGAGATCAAGGAGGAAAACGGCAAGGAAGTGCAAGTGAGCTTCGA
TGTTTCCGACCCAGAGGAAAACTTCGTCTTTGGGATTCGCTCCCTGTTGC
AGTGGCTAGAGCCGGAGGGCGTGAATGTAACCTCGCTGGCAGACCTAATA
GTCGAAGAGAAAGGGTTGGGAAGCATTATCCATTGTACGGCTGAGACGGA
CGTCTTCGCCTTTGCCACCACTCTCAGCCTGGCCGCGCATCAAAAGAATG
AGGGGATACACAGCCTCTGCGACAAATTGTTGCGTCCCCGCTGTCCACCT
ACATTGAAAAAGGCCTTGGAGCATGCCTTGGGGAGCCCGGAAACCTTTGT
GTTCTTGCACGCCCGCTTCGTCAACCTACCTCTACCCTTGGTGCCCGTCC
TTCACTCGTCCAGCGAAGAGGACCGGGCGTGGGCACAATCCAATGATGCA
ACGTTCCCAGCTATCAAGAACCTGATCACCCTAAGCCCTTGCTCAGTGGA
TCTGGGACGTGGAAACAATAAGAACGGGTCCTCATTACCCTATGCACCGA
ATGAAGCAATATATGATCGCTTCGAAGACGAATTATTGGTGCAGGCCGCA
GAGATGAATTACTGTTTCGCCCGTGCACCGCCTCAGGAGGCGAAAAAGAA
AGAAAAAGAACCAAACAGCAAACACGAATTGATGAAAGATGGGGAGAGTG
ATGTGAAAGTGGCTGTTGAAGTGCTCAAAAAAAGAAAGAGAAGTAGCAAG
GTCGGCGCGAAAAATGATAGAGAGGGTGGTGAAAGCGTGGCCGGTCAAGG
GGTGGTGATTAGTCTCATTGAGACCAAGAAACTATCGGAATGTCTTCGAC
AAATGAAAGAAATGGTGGGATAGGGAAGCAAAACGTCATTCAAGGAACGG
ATGAAACTAAATAAAGCCCGATGCACCGTCCATGCTGC
back to top

protein sequence of rna1264

>rna1264-protein ID=rna1264-protein|Name=rna1264|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MENFRTTVYSLVKEWSDTQGVDPNVVLMSAGAATLLGLGLMASHACGGSN
GSKKRGGHKHKKGKSKKTEGMGGNGAGASKPLPPPRHQAQQPSKAGATKS
VQGKAKKQSVPTPASGAPAAAMAAARNGVHPDPGGEVGKNKKKKNKHKKK
GALEEGATGGGNSSSQAKEPSMGGRQAQGEAGLANSTFVYNNDRGTVEEV
GKGGWR
back to top

mRNA from alignment at CM002457.1:180227..182546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1264 ID=rna1264|Name=rna1264|organism=Nannochloropsis gaditana|type=mRNA|length=2320bp|location=Sequence derived from alignment at CM002457.1:180227..182546+ (Nannochloropsis gaditana)
CGAGAAACGTCTGAGACGTGAGAGaagctctcccttcctcacccgcCATA
AATCGTGTGGACTGTCACACCAGTGACCACATTCCCCGAAAGCGACGTCC
GTCTCATGCGTCTGGTTTGGTGAGGCAGGAAGAAATGTGTGCTACATGCT
GGGGGAGAGAGCTATAATTTAGAAATGTCTCACGGGATTGATTGTAAACG
ACTTGTTCGACATCAGGAGCTGCGTCAAGTCATCTGACTAATGGAAAGAC
TCGCCTCTTTGTCAGACGCCATAAAGGGTTCGGATGCATTTGCAACCAGG
AGAGAAGATGTATGAAATCGTGCATTTTTGGAGTACGCCATACTGACGAC
CCTGCacttctttttccccacgTCCGTCGCACCGTATCACAATCTAAGGG
GATAAAGGAGGCCTTCTTGCACTCTTTCGAAGTGACCGCGACGGCGACTC
TTTGCAGGAATAAGCGTTCAACAACACAACTACATACTTGTACAAGGTTT
CTGGCGCAGGAACATGGAAAATTTTAGGACTACGGTTTACTCTCTGGTAA
AAGAATGGAGTGATACCCAAGGCGTGGACCCCAACGTGGTTTTGATGAGC
GCAGGAGCTGCTACCTTGCTTGGTGAGTTGGGGCGGACAGTGCTCGTATG
TCATGAGGGAGTCACATTTCTTGGGGGCGAAAAACTTTGCTGGGCGTGTT
CTAGTACAGCTTGAGGTTTTAAAGGTATTTTGTTTCGGAGGTAGACGAGG
CGGGAGGCCCCGCGTCCTTACAATTAGGGCGTAAGATCGACGCAACGGta
aacctccctcccgtaACCTTCCTCCCGATCCACCACATACAGGGCTGGGG
TTGATGGCCTCACATGCCTGCGGAGGCAGCAACGGCTCCAAAAAGCGTGG
CGGGCACAAGCATAAGAAGGGCAAGTCCAAAAAGAcggagggaatgggag
ggaacGGTGCTGGCGCCTCCAAGCCCTTGCCGCCACCGCGACATCAAGCA
CAGCAGCCGTCGAAGGCAGGGGCCACGAAGTCGGTGCAAGGAAAGGCGAA
AAAACAGAGCGTGCCCACCCCAGCGAGTGGGGCgcccgcggccgccatgg
cAGCTGCCCGCAATGGTGTCCACCCGGAtccagggggggaggtgggaaag
aacaaaaagaaaaagaacaagcacaagaaaaagggtgccctggaagaagg
ggcaacgggagggggaaattcATCATCGCAGGCGAAGGAGCCGTCCATGG
GGGGGAGACAAGCccagggggaagcgggcctGGCGAATTCGACCTTCGTC
TACAATAACGACCgagggacggtggaggaggtaggaaaggggggatggag
atgaTAAGGAGGTCTAGGAGGCGATAGTCTCAGGGAAGCTCTGTTGTCTT
GACCCGCAAGATTCTTCTCACCTCATACgcctttgccccccccctttttg
tGACCGCAGTGGGAGGCCTTCAACGACCCGGACGCTGGGTGGCGCGTGGT
GACcaacaagaggaagagcaaggtcaagagggagggagcggccgaggaag
ggggggagggacctgTAGAAgagacgacgaggacatcGGAATGATGTCGA
GGATAAAGCAGCGGAGAAGGATGAACCATGAGTTTTTTGTACCAAATTTT
TAGCGAtagggagaaaaagacgagaGTGAGAAGACGGTGAGGATTGGAAG
GGACAGTGGGAAGCTTTGCACGTGTTGAGACTCGCTCTGCTTGCAAAGCG
TCGGAGAAATTTTCTAACTTTGGTTTGTTTTAATTTTGTACGGGATTCAA
GGAGGGCAATATAGGGCGATAGAGTAATTGACCACTCACCTGTTGATAGA
TAGCGCCGGAGGTGAGAAacgtgggaaggaaggaaatagcaagggcggga
agccaAAGCAAATCAGCAGTAGTAGGCCCGCAGTCCTCATCTGTGGCATC
AGgccgcaggaggcgggggaataTGGGAGCGCGGCAAGCATGAACTGAAC
ATAAGGTGGTTGGAAGGGGGCAACaaaagggatggaaggaagtCTGATAC
CCCTGCTCGTGGTCAGATTTCCTTCAGGAAGGagtcggggagggggacgt
ggggggtaagagggagggatgcggCGCGGTGCGCACTGCAGTGCACAGTG
ATTGCACCGTGTCGGGGTGTTTCAGGCACCAGAGCGAAAACTAGGGGGGA
AGAGCTCCATGAAACCTTCCCAGCCCTCGAGTCGAATGTCAATTTCTGTA
CGACATCGGAACCAGCTAGAAGCTCTCAGCCACGTTgcaaaagaagaaac
aaTTCTCTTTTAGCCCTTCT
back to top

Coding sequence (CDS) from alignment at CM002457.1:180227..182546+

>rna1264 ID=rna1264|Name=rna1264|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002457.1:180227..182546+ (Nannochloropsis gaditana)
ATGGAAAATTTTAGGACTACGGTTTACTCTCTGGTAAAAGAATGGAGTGA
TACCCAAGGCGTGGACCCCAACGTGGTTTTGATGAGCGCAGGAGCTGCTA
CCTTGCTTGGGCTGGGGTTGATGGCCTCACATGCCTGCGGAGGCAGCAAC
GGCTCCAAAAAGCGTGGCGGGCACAAGCATAAGAAGGGCAAGTCCAAAAA
GAcggagggaatgggagggaacGGTGCTGGCGCCTCCAAGCCCTTGCCGC
CACCGCGACATCAAGCACAGCAGCCGTCGAAGGCAGGGGCCACGAAGTCG
GTGCAAGGAAAGGCGAAAAAACAGAGCGTGCCCACCCCAGCGAGTGGGGC
gcccgcggccgccatggcAGCTGCCCGCAATGGTGTCCACCCGGAtccag
ggggggaggtgggaaagaacaaaaagaaaaagaacaagcacaagaaaaag
ggtgccctggaagaaggggcaacgggagggggaaattcATCATCGCAGGC
GAAGGAGCCGTCCATGGGGGGGAGACAAGCccagggggaagcgggcctGG
CGAATTCGACCTTCGTCTACAATAACGACCgagggacggtggaggaggta
ggaaaggggggatggagatgaATGGAAAATTTTAGGACTACGGTTTACTC
TCTGGTAAAAGAATGGAGTGATACCCAAGGCGTGGACCCCAACGTGGTTT
TGATGAGCGCAGGAGCTGCTACCTTGCTTGGGCTGGGGTTGATGGCCTCA
CATGCCTGCGGAGGCAGCAACGGCTCCAAAAAGCGTGGCGGGCACAAGCA
TAAGAAGGGCAAGTCCAAAAAGAcggagggaatgggagggaacGGTGCTG
GCGCCTCCAAGCCCTTGCCGCCACCGCGACATCAAGCACAGCAGCCGTCG
AAGGCAGGGGCCACGAAGTCGGTGCAAGGAAAGGCGAAAAAACAGAGCGT
GCCCACCCCAGCGAGTGGGGCgcccgcggccgccatggcAGCTGCCCGCA
ATGGTGTCCACCCGGAtccagggggggaggtgggaaagaacaaaaagaaa
aagaacaagcacaagaaaaagggtgccctggaagaaggggcaacgggagg
gggaaattcATCATCGCAGGCGAAGGAGCCGTCCATGGGGGGGAGACAAG
CccagggggaagcgggcctGGCGAATTCGACCTTCGTCTACAATAACGAC
Cgagggacggtggaggaggtaggaaaggggggatggagatga
back to top
Synonyms
Publications