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Properties
| Property Name | Value |
|---|
| Product | prolyl-trna synthetase |
| Orig transcript id | gnl|cribi|Naga_100042g42.5644.mrna |
| Orig protein id | gnl|cribi|Naga_100042g42.5644 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:153540..156444 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of rna1254 >rna1254-protein ID=rna1254-protein|Name=rna1254|organism=Nannochloropsis gaditana|type=polypeptide|length=687bp
MLPQPLLRGRRLLFGSAGMILLFTGRLAPLAAWVAPRPSPAPRNYLPQAF
ASLSSYSLGPFSASTRLDRRRTKGHARSRLFSSSTPRVSSPALETLREAI
GRKGDEIRGLKVGGADKAALQPLVSELLDLKAQFEDVAGVPYDPPKGGGG
KKQGAKNGGKQKTKLAAGDADEEEGVMKQHADRSSLAITPRDENYSQWYL
DVIAAADLVDQSPVKGCMVIKPYGMALWDALRDELDKRIKANGAQNAYFP
LFIPRSFLSKEAEHVEGFAKECAVVTHHRLCVDPAGGPGLVPDPSAQLEE
PLIVRPTSETMIWNMFGKWITSHRDLPLKINQWANVVRWEMRTRPFLRSS
EFLWQEGHTAHASREEAVGYARDQLDLYGNVCRDMLALPVVKGVKSASER
FAGAEETFTIEALMQNGWALQSGTSHFLGQNFARAFDVDFQTAEGTRELV
WATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQVVVVPILKGAGSEED
DRTTAFMNTVASALRTQNVRVHVDNRANMRPGAKYFEWERKGVPIRLEIG
PRDAAAGVVTLARRTGGAKETIPAGNTFGHVIQNELEACQSYLLEEAEKR
VASHTYRVDAYVEMKERLAGGGREDIGFFLAPWKDDAVNEAAIKEDCRAT
IRCYPLDLNADPDRVQARKCFYSGEPATHIALFARAY back to topmRNA from alignment at CM002457.1:153540..156444+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1254 ID=rna1254|Name=rna1254|organism=Nannochloropsis gaditana|type=mRNA|length=2905bp|location=Sequence derived from alignment at CM002457.1:153540..156444+ (Nannochloropsis gaditana)
GTGGCGTCAGCGTtcacgggagggggggaaatgaacGACACCTTTAGCAA
GACATACCGGCTTTCCAGTGCCTTAGGCGTCGTTTCGCATCCATTTTGAA
TAAGCATGCCTTAGTTCTTTCGTGCAATAGGCGAATCAGATGCTGAATGA
AGGATAAGTGTCGCGGGAAAGCGTGAGCTTCATGACTCTCCTAACCTCCC
AACTACAAACTAGCTGGGCATGCTGATGGGCTTTTTGACCAACTTCAATG
GATGACATGCTATAAATTTTTACACAGCATTGGGTAAAAATGGCGTAATT
GTGCGGCCCGCGGAAAATCGAGCTATGAAATGGAATTTCCTCCTGATAGC
ACTGAGATATCTCCCTGTCAGAGCCCTTCAGTCGATTCTTCCACCACGAA
ATACAATGCAGGAGAAATCGCAGGGATGAATGCACTAAAAGATAGAAAAA
GCATATTGTTATACCAGCTGATTTGACATTGTCTCTCATAGGGGCTACTT
CGCCTCCGTCAGTCATGCTAGCCCTCGTGCATGACCGAGTTTTCCTAGCG
CTCACGCCCCGATCCgtccttgctcctcttgGGGTGACAATCTGTTCCTT
CTCACAGGGACTACTTTTTCCGCGTGCATCCACCCACGCATGCTGCCTCA
GCCATTGCTGCGTggccgccgtctcctctttGGCAGTGCTGGCATGATTC
TTTTGTTCACAGGACGTCTGGCCCCCCTCGCGGCTTGGGTCGccccgcgt
ccttctcctgccccacGGAACTATCTTCCACAAGCctttgcttccctctc
ctcgtacTCGCTTGGACCTTTCTCTGCCTCTACACGCCTTGACAGAAGAA
GAACCAAAGGCCATGCCCGAAGCCGACTCTTCAGCAGCAGTACTCCGAGG
GTCTCTAGCCCAGCCTTGGAAACCCTCCGGGAAGCTATTGGGCGCAAAGG
GGACGAGATTCGAGGCTTGAAAGTTGGTGGAGCCGACAAAGCAGCTCTTC
AGCCCTTAGTAAGCGAGTTGTTGGACCTGAAAGCCCAGTTTGAAGACGTA
GCGGGCGTGCCCTACGACCCACCcaagggtggcggggggaaaaaacaagG
CGCAAAGAATGGAGGCAAGCAGAAGACAAAGCTCGCAGCAGGCGacgccg
acgaggaggaaggtgtgATGAAGCAGCATGCGGATCGAAGCTCCCTGGCC
ATTACTCCGCGCGACGAGAATTATTCGCAGTGGTACCTGGACGTGATCGC
CGCGGCGGATTTGGTGGACCAGAGTCCGGTGAAAGGGTGCATGGTCATCA
AGCCGTACGGCATGGCCCTCTGGGACGCCTTGCGCGACGAGCTTGACAAA
CGAATCAAAGCGAACGGCGCTCAAAACGCCTACTTTCCCCTCTTTATCCC
ACGCTCCTTCTTGAGCAAGGAAGCCGAGCACGTGGAAGGCTTTGCCAAAG
AATGCGCGGTCGTCACTCACCACCGTCTTTGTGTGGACCCAGCgggcggc
cctggccttgTCCCAGACCCAAGTGCCCAGCTCGAAGAACCCCTGATCGT
GCGACCGACGTCGGAGACGATGATTTGGAACATGTTTGGCAAGTGGATAA
CGTCCCATCGGGATCTGCCCCTCAAGATCAACCAATGGGCCAATGTAGTC
CGGTGGGAGATGCGGAcacggcccttcctccggtCCTCCGAGTTCTTATG
GCAGGAAGGACACACCGCGCACGcgtcgcgggaggaggccgtggggtACG
CCCGCGATCAGTTGGATTTATATGGGAACGTGTGTAGGGACATGCTGGCC
CTGCCCGTCGTCAAGGGGGTGAAAAGCGCCAGCGAGCGTTTcgcgggcgc
ggaggagacCTTCACGATTGAAGCCTTGATGCAAAACGGATGGGCGTTGC
AAAGCGGTACCAGTCATTTCTTGGGGCAAAACTTTGCCCGAGCCTTCGAC
GTGGATTTCcagacggcggaggggacgCGGGAGTTGGTATGGGCCACCTC
CTGGGGGGTGAGTACGCGCCTGATCGGTGCTTTGGTGATGACGCATTCCG
ACGACAAGGGCCTGGTCCTGCCCCCCTCGGTCGCGCCAGTGCAGGTGGTG
GTCGTCCCGATTTtaaagggggcggggagcgaggaggatgaccggACCAC
GGCTTTCATGAACACGGTCGCATCGGCCCTGCGGACCCAGAACGTACGGG
TGCATGTCGACAACCGCGCAAATATGCGGCCCGGTGCCAAATATTTCGAG
TGGGAACGGAAGGGGGTGCCGATACGCTTGGAGATAGGCCCTAGGGACGC
GGCGGCAGGGGTCGTGACCTTGGCGCGTCGCACGGGGGGGGCCAAAGAGA
CCATCCCGGCGGGGAACACCTTTGGGCACGTGATTCAAAACGAGCTGGAA
GCTTGCCAGTCCTACCTGTTGGAAGAAGCTGAGAAACGGGTGGCCTCGCA
CACGTACCGGGTAGACGCGTACGTGGAAATGAAAGAACGGcttgcagggg
gagggcgggaggacatTGGGTTCTTCCTGGCCCCATGGAAAGATGACGCT
GTGAACGAGGCAGCCATCAAAGAAGATTGCCGAGCTACGATTCGCTGCTA
CCCCTTGGACTTGAACGCGGACCCTGACAGGGTCCAGGCACGGAAATGCT
TTTACAGCGGCGAACCGGCCACCCACATCGCCCTTTTCGCTCGGGCTTAT
TGAGAATATGTGGGAAAAGACGAGGGAGttggagagagagacgagtgggg
ggaagaagagaaagtagTTTGCTTTCCCGCTGCGTCTATACATAGATACT
TTTTTTCCAAAAGAGAACGTGAGTCCAAAAGAACTGAAGGCAGAAGCATG
CACGAGTTGCTGTGGCCAAAGGGCCTGGGGGATGGACAATGCTTTCATCC
ATTTT back to topCoding sequence (CDS) from alignment at CM002457.1:153540..156444+ >rna1254 ID=rna1254|Name=rna1254|organism=Nannochloropsis gaditana|type=CDS|length=2064bp|location=Sequence derived from alignment at CM002457.1:153540..156444+ (Nannochloropsis gaditana)
ATGCTGCCTCAGCCATTGCTGCGTggccgccgtctcctctttGGCAGTGC
TGGCATGATTCTTTTGTTCACAGGACGTCTGGCCCCCCTCGCGGCTTGGG
TCGccccgcgtccttctcctgccccacGGAACTATCTTCCACAAGCcttt
gcttccctctcctcgtacTCGCTTGGACCTTTCTCTGCCTCTACACGCCT
TGACAGAAGAAGAACCAAAGGCCATGCCCGAAGCCGACTCTTCAGCAGCA
GTACTCCGAGGGTCTCTAGCCCAGCCTTGGAAACCCTCCGGGAAGCTATT
GGGCGCAAAGGGGACGAGATTCGAGGCTTGAAAGTTGGTGGAGCCGACAA
AGCAGCTCTTCAGCCCTTAGTAAGCGAGTTGTTGGACCTGAAAGCCCAGT
TTGAAGACGTAGCGGGCGTGCCCTACGACCCACCcaagggtggcgggggg
aaaaaacaagGCGCAAAGAATGGAGGCAAGCAGAAGACAAAGCTCGCAGC
AGGCGacgccgacgaggaggaaggtgtgATGAAGCAGCATGCGGATCGAA
GCTCCCTGGCCATTACTCCGCGCGACGAGAATTATTCGCAGTGGTACCTG
GACGTGATCGCCGCGGCGGATTTGGTGGACCAGAGTCCGGTGAAAGGGTG
CATGGTCATCAAGCCGTACGGCATGGCCCTCTGGGACGCCTTGCGCGACG
AGCTTGACAAACGAATCAAAGCGAACGGCGCTCAAAACGCCTACTTTCCC
CTCTTTATCCCACGCTCCTTCTTGAGCAAGGAAGCCGAGCACGTGGAAGG
CTTTGCCAAAGAATGCGCGGTCGTCACTCACCACCGTCTTTGTGTGGACC
CAGCgggcggccctggccttgTCCCAGACCCAAGTGCCCAGCTCGAAGAA
CCCCTGATCGTGCGACCGACGTCGGAGACGATGATTTGGAACATGTTTGG
CAAGTGGATAACGTCCCATCGGGATCTGCCCCTCAAGATCAACCAATGGG
CCAATGTAGTCCGGTGGGAGATGCGGAcacggcccttcctccggtCCTCC
GAGTTCTTATGGCAGGAAGGACACACCGCGCACGcgtcgcgggaggaggc
cgtggggtACGCCCGCGATCAGTTGGATTTATATGGGAACGTGTGTAGGG
ACATGCTGGCCCTGCCCGTCGTCAAGGGGGTGAAAAGCGCCAGCGAGCGT
TTcgcgggcgcggaggagacCTTCACGATTGAAGCCTTGATGCAAAACGG
ATGGGCGTTGCAAAGCGGTACCAGTCATTTCTTGGGGCAAAACTTTGCCC
GAGCCTTCGACGTGGATTTCcagacggcggaggggacgCGGGAGTTGGTA
TGGGCCACCTCCTGGGGGGTGAGTACGCGCCTGATCGGTGCTTTGGTGAT
GACGCATTCCGACGACAAGGGCCTGGTCCTGCCCCCCTCGGTCGCGCCAG
TGCAGGTGGTGGTCGTCCCGATTTtaaagggggcggggagcgaggaggat
gaccggACCACGGCTTTCATGAACACGGTCGCATCGGCCCTGCGGACCCA
GAACGTACGGGTGCATGTCGACAACCGCGCAAATATGCGGCCCGGTGCCA
AATATTTCGAGTGGGAACGGAAGGGGGTGCCGATACGCTTGGAGATAGGC
CCTAGGGACGCGGCGGCAGGGGTCGTGACCTTGGCGCGTCGCACGGGGGG
GGCCAAAGAGACCATCCCGGCGGGGAACACCTTTGGGCACGTGATTCAAA
ACGAGCTGGAAGCTTGCCAGTCCTACCTGTTGGAAGAAGCTGAGAAACGG
GTGGCCTCGCACACGTACCGGGTAGACGCGTACGTGGAAATGAAAGAACG
GcttgcagggggagggcgggaggacatTGGGTTCTTCCTGGCCCCATGGA
AAGATGACGCTGTGAACGAGGCAGCCATCAAAGAAGATTGCCGAGCTACG
ATTCGCTGCTACCCCTTGGACTTGAACGCGGACCCTGACAGGGTCCAGGC
ACGGAAATGCTTTTACAGCGGCGAACCGGCCACCCACATCGCCCTTTTCG
CTCGGGCTTATTGA back to top
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