rna1251, rna1251 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1251
Unique Name	rna1251
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3219
Alignment location	CM002457.1:147159..148550 +

Link to JBrowse

Properties


Property Name	Value
Product	calcium calmodulin-dependent protein variant variant
Orig transcript id	gnl\|cribi\|Naga_100042g46.5667.mrna
Orig protein id	gnl\|cribi\|Naga_100042g46.5667
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:147159..148550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100042g46	gene1205	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1251	rna1251-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29420.1	cds1250	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:147159..148550+
coding sequence from alignment at CM002457.1:147159..148550+

mRNA sequence

>rna1251 ID=rna1251|Name=rna1251|organism=Nannochloropsis gaditana|type=mRNA|length=3219bp
AAAAAGAAAAATCCTGAGCCTCAAAGCACGTGGCACCCATCGCCTTAACC
CATACACCGCCTGTGGACATGCTCCCAAACGTGCACATGACCACGGAGGG
CGCATCGTGCGGTGTTTGCTGACTTGTTCCACTTGTAGGACGGACCTCAA
GGAGAGGGGTTGCCACGCCATTGCAGCAGTCGAAAAATTCCCATCCCATC
AGAACTCCTGTGAAGAGCTAACTCCCCACCACATGGCTTGGAAATTGCTC
ATTCACTGGACGTCTTTTGAAGGAGAACATCCAGGATGCTTGTGCTGCGT
GGTGTGTCCCCGTCCTACAGGCATGTCGGTGTGTTTGCATGTCTGATAGA
TGCTATAGTGCTCTGCTTGAAGAGATGGTTGAGGCAACGCGCAGAGGTGT
CTTCTGCTCCCAAGAAAATGGATTTGTCTAAACCCCCGCCCGGCCCCCGC
AATGCCGTTTTCCTTTTACTTCTTGTCAAACAAGGATACAGATACGCTAG
TTGCCACGAGAACTTCGCAAAAGCCGGAGCTGAGCGGCCTTACTCTCTGT
CGCTACGCTGGTCTGCCGTCCAAGCACGTTGATCTTTCCCAGCACTGCGT
CGCACACGGGGTATGTCCAACGTCCCACCTGCCGCTAGCCTTCTTTGACG
CGCACAGCACAAGCCACATTGTTTAAGAGGGCGGCGAGAGCAGGAGCAAA
AGCAATCAGGACAAGAAGCATCGCAGATCGGGAGACTATCACTAGACCTC
TCCCCTCCGGTTCAGCATGCCCTTCTCCGAAAAGTCCTATTCTGCAAGCA
GCTCCAATGCGGAGGCTGCATTGCCCACACAACTTGCGACCCAAGCAATG
CAGGGTAAGCCCACGCGATCCGCCCCGGTGGCGCCCCCTTCCTCTCCCGG
AGGGTGTACGGCAGAATCGATCTCGGGAGAAGAAGCAACCCTGTCTACCA
GCCCAGGCTCGTCGACCACATCCTGCGCTTCCTTGGCCCCCTCCATGTCC
GGAAGTGGGGATTCGTGTTCTCTCACGGAGGGATCAGAGCACTCCGTGCG
CGAGGGAAAGGCATCAAAGCCGGGGGCAACAAATGCCCCCCCCCCCGCCC
CGCACGCTCCCGTTGACAGGCGATAGCCACACCATTGCCATGCAAGAGGT
CGGCGTCGGCGACGACAGCCACACGGGGCACTCAGACGGCTCGAACGCGG
TTCCTGCTGGTCCAAACGCTCACCCATCCCTGGGCGGGAATGGGCGTGGT
GCGGGCAAGGCCCTCGGAGGCGACCAAAGTGGCCCCAGGCCCCCTGTCCC
GGGGCCGGGCCACAACGGACAGTGTGGGGTCGTGGAACGGGGGGAAGGCG
GGGATGGCCGACCCTCGCGTCGTCCGCGGCATGTCTACGGGCGCTTACCT
AAATTCAGTCCCTTTGTGGGCGTCTTCCAGCATGCCCCGGGGGCGGGAAA
CCGGGCCCGGGCGACGTTTTTTGACAACCTGCTGTTGACCGAGGAAGAAC
ACGAACGCCGGAAGCGGATCAAGACCAATCCCTTCACTGGCACTTTCCAC
TTCTTGCCCGGGCGCTACTCGAGTTTGCATGGCTTGCAGCGCTTTCGTGA
GCGGCACCGTCAGCAGGCCCACGCGGGTTTGATGACGGCGTCCTTTGATG
AATTGAACCGCCTGGCCGCTTTGTCCGCCCGCGCCGTGTCGCAGTCCATC
GAATCCGCGGACAAGAAGAGTATGTCGGACAAGTTCCTCAAAGGGGCCCT
GGCCCTCTCAGCGGAGCAATACCAACAGTCCCGGCGCCGGTCGTTGTACC
CCCACAAAACCAAGAGCGGCCAAGCCTGGTACGCGGAGTTGACCATGACG
AATGGATTGCCCCGACAACGCTACGGCGGGGCCGTGGACATCTCCCGGAA
GTTTGGCACTTCCCTGGACGACTGTTGCGTGACGGGCCTGAGGACCACCT
GGCGTGGCCCCTCCCTCTACCGGGACATATTATACCGGTGGAACGGCTTC
CGCGTGTACTACGTGCACAAAATGCGACGGCAGGGCCCGGGCATGTGGAG
ACGTCGCGGGAGCATGGGCTCGATGCTGCTGGGCAGCAATGGAGAGGATG
AGCAGCTAGCAACGCACCGGCGGGCCTCAAAAAACTGGAGGCGGGCGAGC
TCAGTGGCTCTCACGGGGCTGTGGTGGGGCCGTGGAGGGGGGAATGGGGG
GGGAGGGCAACGACAGGGGACCGTTGGCCTGTCGCGGTCCACAACCTTGC
CGTCGAACCGTGCGCTTTCCTCCGGGCACATGGCGGTGCCCACCGCAAGC
GTGGACGAGGGCGGGGGAAGGAAAGGCCGTTCCCCTCCGCGGTTGCAGCA
TCTGATCCCAGAGGGCCTGGGCCGGGCGGGGGGAGGGGAGGACTACGCGA
TGGGGCACGACTACCACCACTCCCGCTCCCCATGTGCCAGGGAGGGCATG
TCGGCCCCTGGTTTCTCTGGGACGCAGGAGCATCATGGCGGGACGCGAGG
GGATCGTCCGGAGTACCGGCGCAGTCAAACGGCGACCCTCATTTCGGCCC
ATTTGTTGCACGGCACGGCAGGGGAAGAAGAGGGAGGAGGCAAGCAAGGG
AGGGCAGGAAAGACGGGCCACGAGCGAGAGCGCCCACGAAAAGTAGGGGA
TGACTACGACGTGGATCAGAACCAGGTCCTGGGCGAGGGGAGCTATGCGG
CTGTCTATGGAGGCGTCCACCGGGCCAGCCAAGATCAGGTGGCGGTGAAG
GCGATCAAGCGGCGGTACTTGTTCACAGAGGAGGAGAAGGCGAGCGTTCG
GAACGAAATTGAAAACATGCGGCGCATCCCGCCCCATCGAAACGTGATTA
GGCTGCGGGAGTGCTTTGAAACCGTAGAGCACGTTTACCTCGTCATGGAC
CGGTCCACCCATGGTAATTTGGAACAAATGCTCCAAATTCGTCGGAAACT
CACGGAGTTGGAGACTATGTGGGTGGTGAAACAGATGCTGGATGCCGTGG
ACCTCTTGCACCGGTCGGGGGTGCTACACTGTGACTTGAAGCCCCAGAAT
CTTCTGTTCTCGGACTTTGACGACGGCATTGCCTTGGCCGCGCTTTCCAA
GGGCAACCAGCAGGCTTCCCAGCTTCGGCGCACCTGGATGTATACCTCTC
CATTGGGAATGATTCTCAGGGTACGGGTACAAAGCTTATCTGCGGGCCTG
GGGTTTCTAGACTGACTGA

protein sequence of rna1251

>rna1251-protein ID=rna1251-protein|Name=rna1251|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MPPFPPVLKPPLVSFTALRAVVFPRHVFFSFQSLTPLIPFLPPSPPPSRR
ASFLLPAQVCDFGLSRKVPDVRFFKQTGDIYRVPFSRICGTGGFIPPEII
RKQPFGKPTDLWAVGVICYRMLAGTLPFIPPTKCLDQPVRFQGRAWEGIS
KDAQHFIARLLTPDQNKRATAREALGHRWLQTVPEWGPTPGLPSSGPSST
GRGAAGKGSGKENVGEKRPGEVVVGAEA

mRNA from alignment at CM002457.1:147159..148550+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1251 ID=rna1251|Name=rna1251|organism=Nannochloropsis gaditana|type=mRNA|length=1392bp|location=Sequence derived from alignment at CM002457.1:147159..148550+ (Nannochloropsis gaditana)
GGGGGTTGCTTGTGTGGGGGGATTGGTCGGTCACCTGTAACGAAGGGCTT
CTCAAACCatgccccctttcccgcccgtcctgaAGCCTCCTCTCGTGTCT
TTCACCGCTCTCCGTGCCGTCGTTTTCCCACGCCACGTCTTCTTTTCATT
TCAATCTCTTAcccccctcattccctttctccctccatccccccccccct
cccgccgtgcctctttcctcctccctgctcagGTCTGTGACTTTGGCCTC
TCCCGGAAAGTACCCGACGTGCGGTTTTTCAAACAAACTGGAGACATCTA
CCGCGTCCCGTTCTCCCGCATTTGTGGCACAGGGGGCTTCATTCCCCCGG
AGATCATTCGAAAACAACCGTTTGGAAAACCCACTGATCTGTGGGCCGTG
GGCGTGATTTGCTACCGGATGCTCGCGGGGACCTTGCCCTTTATCCCCCC
GACGAAATGCTTGGATCAACCCGTCCGGTTCCAAGGTCGTGCGTGGGAAG
GGATCAGTAAGGACGCCCAGCATTTCATTGCCCGCCTGCTGACGCCGGAT
CAGAACAAGCGAGCGACGGCTCGGGAGGCATTGGGGCACCGATGGCTGCA
GACAGTGCCGGAGTGGGGTCCGACGCCAGGGCTGCCTTCCTCtggcccgt
cctccaccgggaggggcgcggcagggaagggaagtgggaaggaaaacgtg
GGCGAGAAGCGACCAGGGGAGGTGGTTGTGGGAGCGGAAGCATGAAGGTT
TATAGGGACAGAAGGCAGgtagaagaaaggggcgatATATGCAGGTGATG
GCGAGGATGGTTCGGCATGTGGGTGTGAAAATGTGGTGTACATGGGCGAA
AATTTGAAGAGAAATGTGGACCGGAGACGCCACGGACAAGGCTCTTCGTT
AGGGGTCATGGGAACTGGGGGCATCCTTTCCAGAATTGTGAGAAGGGATG
TGTGGGGAATCGGCAAGGATGCCAGGCGGGCAAAGTATCGTTGAGGGGAA
TCTGCCCCGGCCAGGGTCTGTATCCGGTGGGTACGCCCGAGAAACCGCCT
GGTCAGGTCGGAGGGTAGAATGGTCAAGCACGTATGTGGAAGGACTGAGA
GGAAAGTGACCGCGGAATCACATGCATTGGCACACGCTTTGGTGCCATGG
AAATGACGGAATGGACTGGGTCCTGGATGTCGCGCCCGAGTATGGAGATG
GGCAGTGCCAACGGGCAAATCTCATACTCAGTGACAAGACGGTTCAGTCG
CGCGAATGGAAGATAAATACGGTGCAAATTCGTCCAAAACGTATTGCGTT
GGCCTTCGTCAAATTTGTATTTTTTTGGTGAAAGATGTGTTTTGTCGGGT
ATCATTCCTCCCGCTACTCCTGCCGACAGGCATCATGAGTCC

Coding sequence (CDS) from alignment at CM002457.1:147159..148550+

>rna1251 ID=rna1251|Name=rna1251|organism=Nannochloropsis gaditana|type=CDS|length=687bp|location=Sequence derived from alignment at CM002457.1:147159..148550+ (Nannochloropsis gaditana)
atgccccctttcccgcccgtcctgaAGCCTCCTCTCGTGTCTTTCACCGC
TCTCCGTGCCGTCGTTTTCCCACGCCACGTCTTCTTTTCATTTCAATCTC
TTAcccccctcattccctttctccctccatccccccccccctcccgccgt
gcctctttcctcctccctgctcagGTCTGTGACTTTGGCCTCTCCCGGAA
AGTACCCGACGTGCGGTTTTTCAAACAAACTGGAGACATCTACCGCGTCC
CGTTCTCCCGCATTTGTGGCACAGGGGGCTTCATTCCCCCGGAGATCATT
CGAAAACAACCGTTTGGAAAACCCACTGATCTGTGGGCCGTGGGCGTGAT
TTGCTACCGGATGCTCGCGGGGACCTTGCCCTTTATCCCCCCGACGAAAT
GCTTGGATCAACCCGTCCGGTTCCAAGGTCGTGCGTGGGAAGGGATCAGT
AAGGACGCCCAGCATTTCATTGCCCGCCTGCTGACGCCGGATCAGAACAA
GCGAGCGACGGCTCGGGAGGCATTGGGGCACCGATGGCTGCAGACAGTGC
CGGAGTGGGGTCCGACGCCAGGGCTGCCTTCCTCtggcccgtcctccacc
gggaggggcgcggcagggaagggaagtgggaaggaaaacgtgGGCGAGAA
GCGACCAGGGGAGGTGGTTGTGGGAGCGGAAGCATGA

Synonyms

Publications