rna125, rna125 (mRNA) Nannochloropsis gaditana

Overview
Namerna125
Unique Namerna125
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1119
Alignment locationCM002455.1:329778..331743 +

Link to JBrowse

Properties
Property NameValue
ProductCell differentiation, Rcd1-like protein
Orig transcript idgnl|cribi|Naga_100033g52.8424.mrna
Orig protein idgnl|cribi|Naga_100033g52.8424
GbkeymRNA
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:329778..331743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g52gene121Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna125rna125-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30585.1cds125Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna125 ID=rna125|Name=rna125|organism=Nannochloropsis gaditana|type=mRNA|length=1119bp
ATGTACGAACCGGTGAACGTGGCCCCCCAGTCCACGCCGTCACTCGGACC
CAAAAGAAACACTGGAACATGGCCTCGCGCCCGGTGCTCGCCGGCTGCAG
ATGCCATATTGCTAATGCTGGGCATGAATCCTCTGAATACTTTGGGTGCA
GTGAATGTCAGTGTTCCTGCACAGTCGAATAGCCTTGCAGGAGGAGGTGG
ACAGGCGTATGAGGAATTGATCCCACTGGTGTTGCAGCTGTCGGAGCTGA
GTAAGCGGGAGACGGCGTTGATGGAGCTGAGTAAGAAGAGGGAAGTCTAC
CCGGACCTGGCGCCTGTCCTGTGGCACTCGGTCGGGACCATGGCCGCGCT
CCTGCAAGAGATCATCGCCATCTACCCCATGCTCACTCCACCAACCTTGA
CGGCGCAGGCCAGCAACCGAGTGTGCAACGCCTTGGCGCTCCTGCAGTGC
GTGGCCTCCCACACGGAGACCCGGGGCCTCTTCCTTCAAGCACACATCCC
CATGTACCTCTACCCGTTCCTGAACACGGTCATGAGCAAGAGCCGACCCT
TCGAATACCTGCGCCTGACCTCTTTAGGCGTGATTGGCGCACTCGTCAAG
GTGGACGACGCGGAAGTAATCTCCTTCCTCCTCCAAACCGAGATCATTCC
GCTCTGTCTGCGCATCATGGAGACCGGGAACGAGCTTTCCAAAACCGTCG
CCACCTTCATCGTGCAAAAAGTGCTATTGGATGAGATGGGTCTGAACTAC
ATTTGTGCCACAGCCGAGCGTTTTTTCGCAGTATCCACCGTCTTGAGCAA
TATGGTTCAGGCTTTGATCGAAGTGCCCTCCGTCCGCCTGCTAAAGCACA
TCGTCCGATGCTACCTGCGCCTGTCTGAGAACCCTCGTGCCCGCGATGCC
CTCCGCCAGTGCTTGCCTGACGCGTTGAGGAGCGATCAGACGTTTTCTCA
ATGCCTGAAGGACGACGTGACGATAAATCGGTGGCTGGCGAATTTGCTGT
ACAACATAACTGAGGGAGCGTGAGAGGAAATATCTTCGATTTGTAAATGG
AATAAAGCACTCCAAGGCTCAATACAGGATAAAAAGAAAAATTCATAAAT
TGTGGGTGTCAAAAGCTTG
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protein sequence of rna125

>rna125-protein ID=rna125-protein|Name=rna125|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNR
VCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLT
SLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQK
VLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLR
LSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
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mRNA from alignment at CM002455.1:329778..331743+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna125 ID=rna125|Name=rna125|organism=Nannochloropsis gaditana|type=mRNA|length=1966bp|location=Sequence derived from alignment at CM002455.1:329778..331743+ (Nannochloropsis gaditana)
TCGTGGCTCTGGCTGTTATTGATGACGAAACTGTCATAATGGTGTATCGT
ATGTGCATATCGCGGGCTTCGCCCTGATACCGGCAACAGATTCTCTCCCA
TGGCCCTCCCAGACGCCACTAGATCACTGATACCCCCTTCATCACCAACA
TTACATGCTCAGATGCCATATTGCTAATGCTGGGCATGAATCCTCTGAAT
ACTTTGGGTGCAGGTACGTGGAAAACATCTATGCATGTTTGTTTGTGTGG
ACACCAACATGTCTTGCTAGTAGCAACGACAGAAGTGTAAAATACCAGCA
CCATGGCGGACATCGCGGGAACAGAGGACAGGCATATGTCTATTCTCCAC
ACCAACGACCATATTATTTTTGTGTGGGATCTGTACTCCTGTGTTCTGCC
ACACCAAAATGCGTAGTACGGGCCTTACCTAAGCGTGCGCAACCGCATCC
ATTCTCTCACATCGCTTTCATTCCCAATGCGAACTACCAATTGCAACGTA
CGCCTAGTGAATGTCAGTGTTCCTGCACAGTCGAATAGccttgcaggagg
aggtggacaggCGTATGAGGAATTGATCCCACTGGTGTTGCAGCTGTCGG
AGCTGAGTAAGGTAGAGTTGGGGATGAAGAGCGAAGTCGTAGAATCCCTG
GGGCAAGCACGTAGGTTAGAAAATGCCATAAAGCACAGCGTGGAATGGAC
ATGCTTCACTCAAACGAGCAGGCCCGGGCAATCAAGGCGCACGCCAACTA
GGCGAGCGCGAGGGAGTGAAgtagaagaagggggagaggggccgaGTTGG
GATCCCTGAATCatcccccacgtcctctctctgccctttTCTCACCCGTC
CTTGtaactccctccctcttttctctgcATCTCacttccgtctccttccc
tgcttcccggCACGCAGCGGGAGACGGCGTTGATGGAGCTGAGTAAGAAG
AGGGAAGTCTACCCGGACCTGGCGCCTGTCCTGTGGCACTCGGTCGGGAC
CATGGCCGCGCTCCTGCAAGAGATCATCGCCATCTACCCCATGCTCACTC
CACCAACCTTGACGGCGCAGGCCAGCAACCGAGTGTGCAACGCCTTGGCG
CTCCTGCAGTGCGTGGCCTCCCACACGGAGACCCGgggcctcttccttca
aggTTGGttggggcgaggggagggggcgcggaggtaggaagggagcggag
agAGGCGTGCAGTCTTTGTGTTCAGCATTTGGGCTCATGCACTTGTGTGG
GTGCGGTGTTCGAGGGCACAGGCGAGCTACCAGAGCGATGGCTCCTATCT
CTGACGTTtgtgtccttctcttcctcccggcctccaGCACACATCCCCAT
GTACCTCTACCCGTTCCTGAACACGGTCATGAGCAAGAGCCGACCCTTCG
AATACCTGCGCCTGACCTCTTTAGGCGTGATTGGCGCACTCGTCAAGGTG
GACGACGCGGAAGtaatctccttcctcctccaaaccGAGATCATTCCGCT
CTGTCTGCGCATCATGGAGACCGGGAACGAGCTTTCCAAAACCGTCGCCA
CCTTCATCGTGCAAAAAGTGCTATTGGATGAGATGGGTCTGAACTACATT
TGTGCCACAGCCGAGCGTTTTTTCGCAGTATCCACCGTCTTGAGCAATAT
GGTTCAGGCTTTGATCGAAGTGCCCTCCGTCCGCCTGCTAAAGCACATCG
TCCGATGCTACCTGCGCCTGTCTGAGAACCCTCGTGCCCGCGATGCCCTC
CGCCAGTGCTTGCCTGACGCGTTGAGGAGCGATCAGACGTTTTCTCAATG
CCTGAAGGACGACGTGACGATAAATCGGTGGCTGGCGAATTTGCTGTACA
ACATAACTGAGGGAGCGTGAGAGGAAATATCTTCGATTTGTAAATGGAAT
AAAGCACTCCAAGGCTCAATACAGgataaaaagaaaaattcATAAATTGT
GGGTGTCAAAAGCTTG
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Coding sequence (CDS) from alignment at CM002455.1:329778..331743+

>rna125 ID=rna125|Name=rna125|organism=Nannochloropsis gaditana|type=CDS|length=1506bp|location=Sequence derived from alignment at CM002455.1:329778..331743+ (Nannochloropsis gaditana)
ATGGAGCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGTCCT
GTGGCACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCATCGCCA
TCTACCCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGCAACCGA
GTGTGCAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGAGAC
CCGgggcctcttccttcaagCACACATCCCCATGTACCTCTACCCGTTCC
TGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCTGCGCCTGACC
TCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACGCGGAAGtaat
ctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTGCGCATCATGG
AGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCATCGTGCAAAAA
GTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCACAGCCGAGCG
TTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAGGCTTTGATCG
AAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATGCTACCTGCGC
CTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGTGCTTGCCTGA
CGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAGGACGACGTGA
CGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAACTGAGGGAGCG
TGAATGGAGCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGT
CCTGTGGCACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCATCG
CCATCTACCCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGCAAC
CGAGTGTGCAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGA
GACCCGgggcctcttccttcaagCACACATCCCCATGTACCTCTACCCGT
TCCTGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCTGCGCCTG
ACCTCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACGCGGAAGt
aatctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTGCGCATCA
TGGAGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCATCGTGCAA
AAAGTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCACAGCCGA
GCGTTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAGGCTTTGA
TCGAAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATGCTACCTG
CGCCTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGTGCTTGCC
TGACGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAGGACGACG
TGACGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAACTGAGGGA
GCGTGA
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Synonyms
Publications