rna1249, rna1249 (mRNA) Nannochloropsis gaditana

Overview
Namerna1249
Unique Namerna1249
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length992
Alignment locationCM002457.1:141968..144123 -

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Properties
Property NameValue
Productisovaleryl- dehydrogenase
Orig transcript idgnl|cribi|Naga_100707g2.7308.mrna
Orig protein idgnl|cribi|Naga_100707g2.7308
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:141968..144123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100707g2gene1203Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29425.1cds1248Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1249rna1249-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1249 ID=rna1249|Name=rna1249|organism=Nannochloropsis gaditana|type=mRNA|length=992bp
GGTTGAACAGGAACAAACAATCGAAGCGGATTTCCTTTCGAGTCAATTTG
GGGTTTTGGCGACTGCGTGGTATCATCGAGCTATGACATCAACGTGGAGA
TTGATTCCTATTCTTGGTCCGGGTGCTCGATATAATGTGCGCGTATCATG
ACTAACTGCATTGTCACACTCATTTCTTGATAACCGCGTGGATCCCAGGC
CCTGTTATTCATGCTGTGCTGACCGGGACCACCGTCCCGTGCAGGGAGAC
TGCGGGGGGAGGAGGGATACATAGGACGCGATGGCTTGGAAAACTTGTCC
TGCTAGCAAGTACTTGGGCATAATTGTTTTCATGACGGTTCTCGTGGTAT
CTCATGCTTTCCAGTCGTCAGCACCTTGGGTGTCACGTATTGGTACAGCC
AGACGGGAGTTTGTCGCGTCGGAGCGATGCAGGAAAAGCCCTACCCATCC
CCCGTTGTGGGCCGCTCCCGCGACCGAGCCTGCACCGTCCGTGGCACAAG
ACGTAGAAGACGAGGCCAAAGGAGCCCAAGTCACGGAAAGCGATGTTGGA
GGGACCTTGTGGGGTGTGAGGGGACGAGAAGAGGAAGGGTCAGTACGCGG
GACGGGACCAACCCCTGAGAGTCTGGAAGCAAATTTGGGTTGGACTGAAG
ATTTCTTAAGCAATATCGGCCTCTCCGGTGATACCTTGCTCGATAACTTG
CGGAGAAGCGCCGACCAGGATGTGTCCAGCAACACTTTGAAAGCCATTCT
CGCGGCTCAGGAGGAATCTCGCTCCTTACTGGCCAAATTACAAGCTGAAT
TGCTCTCTACAAGTGCTTATGCAGCGTCGAAGGCCTTGGCGGACAGCAAA
CTCTTAATCAGCGTGGGTATCGTCGTGGCATCGGAGCTTGCTCAAGTTCT
GGCGCGGCCATTGCTTCCAGCCCCGTCTGATTCCACCCCCCAAGGCACTC
CTGTTCCTCCCTCAAGCCCAGCCCAAGGGGGGCCTTGGACCC
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protein sequence of rna1249

>rna1249-protein ID=rna1249-protein|Name=rna1249|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MLTGFNFSRRAGRARLFSPLPCPSFGAATPPSLIAQRPALQCITTIATKH
SRPFVNQVPRRRFSSEPVPSPPVQIDPFNPTEEHTHLRTTVRAFVEKEVD
PQALVFNRREEFNLPLFRKLGELGLLGLSVPAEYGGSGMDATAVAIAHEE
LSAADPAFCLAYLAHSLLFVNNLAQNGSHAQKSKYLPAACAGTAVGGMCM
SEPGAGTDVLGMGTAATKASDGSHYILNGAKMWITNGTVDGKSTGDVYLV
YAKTGQAAKDVSMFLVEKGSPGFRLGQKLEDKLGMRASMTAELVFDDCRV
PLENLVGKEDGAAACMMRNLEIERVGLAAMSVGLARRCVEVMNAYAQERK
AFGQPLNAFGQVQRHVAESYAEYMAGRAYLYYVANQLDLSSSGNGLDADG
VKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTNEA
HHKNMVRDLKKHHERLL
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mRNA from alignment at CM002457.1:141968..144123-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1249 ID=rna1249|Name=rna1249|organism=Nannochloropsis gaditana|type=mRNA|length=2156bp|location=Sequence derived from alignment at CM002457.1:141968..144123- (Nannochloropsis gaditana)
CATCCTGGATGTTCTCCTTCAAAAGACGTCCAGTGAATGAGCAATTTCCA
AGCCATGTGGTGGGGAGTTAGCTCTTCACAGGAGTTCTGATGGGATGGGA
ATTTTTCGACTGCTGCAATGGCGTGGCAACCCCTCTCCTTGAGGTCCGTC
CTACAAGTGGAACAAGTCAGCAAACACCGCACGATGCGCCCTCCGTGGTC
ATGTGCACGTTTGGGAGCATGTCCACAGGCGGTGTATGGGTTAAGGCGAT
GGGTGCCACGTGCTTTGAGGCTCAGGATTTTTCTTTTTCAAAGCTTTGTC
CTGCCCGACCGGCGCGGAAGGGGAAATAATTGCACAGTCATAATGCCGGC
GAGACCCAAACCGATAAAACACGCGGTGGGAAAGAAAGAGGACACAGGCG
CATTACGCGATCCCTCTCGATCTTTATACACATTGTCCCCTAGGCTGCGA
GCATGCTTACTGGCTTTAATTTTAGTCGTCGCGCGGGCAGAGCCAGACTT
TTTTCTCCCTTGCCATGTCCTTCCTTTGGTGCTGCGACACCACCTTCTTT
AATCGCGCAACGGCCAGCCCTTCAATGCATCACCACGATCGCAACCAAGC
ATTCTCGTCCATTTGTCAACCAAGTGCCTCGTCGCCGCTTCTCCTCGGAA
CCTGTTCCGTCTCCACCCGTGCAAATCGACCCTTTCAATCCGACCGAAGA
ACACACCCACCTCCGTACAACCGTGCGAGCTTTTGTGGAGAAGGAGGTTG
ATCCCCAGGCATTGGTCTTTAACCGCCGCGAAGAGTTCAACTTGCCCCTC
TTTCGAAAGCTTGGAGAGCTAGGCCTGTTGGGTTTGAGCGTCCCGGCGGA
ATACGGTGGGTCTGGTATGGATGCTACCGCGGTGGCCATAGCGCACGAGG
AACTCTCTGCCGCCGATCCTGCCTTTTGCTTGGCCTACCTGGCGCATTCG
TTGCTTTTTGTAAATAACCTGGCTCAGAACGGCTCGCACGCGCAAAAATC
CAAATATTTGCCCGCTGCGTGCGCCGGTACTGCCGTGGGGGGTATGTGTA
TGAGTGAGCCGGGGGCAGGCACAGACGTATTGGGAATGGGCACCGCCGCC
ACAAAAGCAAGCGATGGATCGCACTACATATTGAACGGGGCTAAGATGTG
GATCACAAACGGAACCGTGGACGGGAAGAGCACCGGGGATGTATATTTAG
TGTACGCCAAGACGGGCCAGGCGGCCAAGGACGTGAGCATGTTTCTGGTG
GAGAAGGGATCCCCGGGCTTTCGTTTGGGCCAAAAATTGGAGGACAAGCT
GGGAATGCGGGCGTCCATGACCGCCGAGCTGGTGTTCGACGACTGTCGGG
TTCCGTTGGAGAATCTGGTGGGGAAGGAAGACGGGGCGGCGGCCTGCATG
ATGCGGAACTTGGAAATTGAACGGGTGGGCCTGGCTGCCATGTCCGTAGG
GCTGGCGCGTCGTTGCGTCGAGGTCATGAACGCCTATGCTCAGGAGCGAA
AAGCCTTTGGGCAACCTTTGAATGCTTTTGGTCAGGTGCAACGGCATGTG
GCAGAGTCCTACGCCGAGTATATGGCCGGGCGCGCTTATTTATACTACGT
CGCAAATCAACTGGACTTGTCTTCGTCGGGGAACGGTCTGGACGCAGACG
GGGTTAAATTGTACTGCGCGAAAATGGGCAAGGAGGTGGCGGACAGGGCG
ATTCAGGTTCTGGGCGGGTACGGTTACGTGGGAGAGTATCAGGTGGAGAG
GTTGTGGCGAGATGCCAAGCTCTTGGAGATAGGGGGAGGAACGAACGAGG
CGCACCATAAAAACATGGTCAGGGATTTGAAAAAGCATCATGAGAGGCTG
TTGTAGATTCCAAGGCAGAGAAAGTTGCGGGAAGGAAGGATGGATGTGCA
ATGGGTGGGGCAATGTACTTGTGTAAAGCGCTACGGATGCCAAGGGTCAG
CAAGAGATAATTGTAGCAGAGATGTGGTATATGATGATCATAGCTTGCTT
TGTACAGAATAACGTCAAAAAACAAAGAAAGAGATGTAAAAAGTCGCCCT
GTAAGAAATTTGGATGAAGCACTTCATGGTGTAATTGTTTTTTAGACCGA
AGCACGCGAACACGCCAATGTCTTCCAACTCGTACAGCAAAAATGCCCTT
CAATGC
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Coding sequence (CDS) from alignment at CM002457.1:141968..144123-

>rna1249 ID=rna1249|Name=rna1249|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002457.1:141968..144123- (Nannochloropsis gaditana)
ATGCTTACTGGCTTTAATTTTAGTCGTCGCGCGGGCAGAGCCAGACTTTT
TTCTCCCTTGCCATGTCCTTCCTTTGGTGCTGCGACACCACCTTCTTTAA
TCGCGCAACGGCCAGCCCTTCAATGCATCACCACGATCGCAACCAAGCAT
TCTCGTCCATTTGTCAACCAAGTGCCTCGTCGCCGCTTCTCCTCGGAACC
TGTTCCGTCTCCACCCGTGCAAATCGACCCTTTCAATCCGACCGAAGAAC
ACACCCACCTCCGTACAACCGTGCGAGCTTTTGTGGAGAAGGAGGTTGAT
CCCCAGGCATTGGTCTTTAACCGCCGCGAAGAGTTCAACTTGCCCCTCTT
TCGAAAGCTTGGAGAGCTAGGCCTGTTGGGTTTGAGCGTCCCGGCGGAAT
ACGGTGGGTCTGGTATGGATGCTACCGCGGTGGCCATAGCGCACGAGGAA
CTCTCTGCCGCCGATCCTGCCTTTTGCTTGGCCTACCTGGCGCATTCGTT
GCTTTTTGTAAATAACCTGGCTCAGAACGGCTCGCACGCGCAAAAATCCA
AATATTTGCCCGCTGCGTGCGCCGGTACTGCCGTGGGGGGTATGTGTATG
AGTGAGCCGGGGGCAGGCACAGACGTATTGGGAATGGGCACCGCCGCCAC
AAAAGCAAGCGATGGATCGCACTACATATTGAACGGGGCTAAGATGTGGA
TCACAAACGGAACCGTGGACGGGAAGAGCACCGGGGATGTATATTTAGTG
TACGCCAAGACGGGCCAGGCGGCCAAGGACGTGAGCATGTTTCTGGTGGA
GAAGGGATCCCCGGGCTTTCGTTTGGGCCAAAAATTGGAGGACAAGCTGG
GAATGCGGGCGTCCATGACCGCCGAGCTGGTGTTCGACGACTGTCGGGTT
CCGTTGGAGAATCTGGTGGGGAAGGAAGACGGGGCGGCGGCCTGCATGAT
GCGGAACTTGGAAATTGAACGGGTGGGCCTGGCTGCCATGTCCGTAGGGC
TGGCGCGTCGTTGCGTCGAGGTCATGAACGCCTATGCTCAGGAGCGAAAA
GCCTTTGGGCAACCTTTGAATGCTTTTGGTCAGGTGCAACGGCATGTGGC
AGAGTCCTACGCCGAGTATATGGCCGGGCGCGCTTATTTATACTACGTCG
CAAATCAACTGGACTTGTCTTCGTCGGGGAACGGTCTGGACGCAGACGGG
GTTAAATTGTACTGCGCGAAAATGGGCAAGGAGGTGGCGGACAGGGCGAT
TCAGGTTCTGGGCGGGTACGGTTACGTGGGAGAGTATCAGGTGGAGAGGT
TGTGGCGAGATGCCAAGCTCTTGGAGATAGGGGGAGGAACGAACGAGGCG
CACCATAAAAACATGGTCAGGGATTTGAAAAAGCATCATGAGAGGCTGTT
GTAG
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Synonyms
Publications