rna1248, rna1248 (mRNA) Nannochloropsis gaditana

Overview
Namerna1248
Unique Namerna1248
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1614
Alignment locationCM002457.1:140566..141557 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100707g1.7309.mrna
Orig protein idgnl|cribi|Naga_100707g1.7309
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:140566..141557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100707g1gene1202Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29426.1cds1247Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1248rna1248-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1248 ID=rna1248|Name=rna1248|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp
ACCCCCTCCCACGACCGACCGCTAGACTTTTCCGGGACTAGCAACACCCT
TCCACCAGGCCCAGCGTCCACCCCTCTCTTCAGCCTGGCCGAGAAAGTCG
CGCTCGTCCAACGCGGCATCTACCCCTACGATTGGTCCGGCTATCTGTCA
GGCACACCTTCCACATTCATCCTCCCTTCCTTTTCCTCCGCCGGCGATCC
CGACGCACTCTTTCAAGACATGTACCGCAAAACGGCCAAACCAAAAAAGC
TGCCATCCCTTCCCTTCCTGCCCCGCCTCCCCCAGGCCCTTGCCCTCCCC
CTCGACCTCCTGGCCGCCCTCCCTGCGATCCCCAGCCAAGCCTTCCGCAC
CGTGGACGCTGCCCGCCGTCTCAACAAACAGGCCGCCAGCAGGCAGCCCT
CTAGGCAGCTGTGGGCGCAGAGTCTGGCCATGGCCTCCACCATCGCCCGT
CCCCTCCTCGAGCAACCGACCGGGTCCCGGCAACGGCTGCCGTCACCGGA
CGAGAAACGGTTACCGTTACGAGGAGAAAAACGGTCCCCGCGGTCGCAAC
GTCCGGAAGGGCCTCAACAAGAGGAAGAGCTGATGCGACAAGGACGGTCG
CGTAGATTCAGGGAGGGGAATGCGGATGGTCGGGAAGGACCTCCGGCCTA
TCCCAAGGAAGAAGAGGAGGACGAGCCGAGCTGGGCACCGCGGTCGAGAA
CGCGATCCCAATGGTGGGATGGCATACGGCCAAGGCGGCCCAGCGACGTG
GTTGCATCCCCTTTCTCCGCCTCGTCCTCCCTCCCGTCCTCGCCCCCTGT
CCTCGATGCACGTGTCGAAGCCTCAGGGACGGGGGCGGACGTTCGCGCCC
AAATTCCGCGAACGGAGGCGACAAGCCTGGGCCTGGATCCGGGTAGCTTT
CCATCGCTGTCTTCCTTGATGGAAGACTGGGAGGAAGAGGAGGGGGAGGC
AGGGATGGAGGAAGTGATGAGCGTCTCTCGCATGGGCCGGGCGCGAGGAG
GCGCAAGGGGAGGTGGTGCGACGGTGATGGATGGGAGGGAGACGGCATGG
GAGGGAGGGAGGGAGGGAGGGAGGGTAGAGGTACTGTATGCGACCGAGTT
GAAAGGGGGCGACGTGCGCCGTTTGGGCGGGGGAGAGGAGGAAGTGATCG
AGCTTCGGGTGGAGGAGGTGGAGGAGGAAGGGTGGGAGGCAAAGGATTGG
TCAACCGTGTTGGGCAAGGTGGGCCTGCGGATGCTGGACGTGGCCCTGCT
CGGCTTGGAGTATGTTACGGTGGAAGGCCTACCACGGGTCCAGAAACGGC
TGGTAACGGCCGGGAAACGGTTGCAACAGGCCGCCTGGGGGGAAAGAGGA
AAGCCTGGGTGGGACCTGATGCCGGCGTTCGAGAAGCCCATGGACGCCAA
GACCATGTCCACGCGCCGATAGTCCCTTCCTTCCCTTCCTTCCTTCCGCC
CTCCATCCTTCCCGCCTTGCCTTCCTTCCTCCCTTCCGTCGGCCCCTACT
TCCCTCCCACCCTGTTTTCTTCCCCTCCATGGACTGGGAAATGATTTATA
CACGTTTTCCTTCCCTACAATAACACTTCAAGAAAGCAAAATGAACAATA
ACTTTTCTTTGTAC
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protein sequence of rna1248

>rna1248-protein ID=rna1248-protein|Name=rna1248|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MAWKTCPASKYLGIIVFMTVLVVSHAFQSSAPWVSRIGTARREFVASERC
RKSPTHPPLWAAPATEPAPSVAQDVEDEAKGAQVTESDVGGTLWGVRGRE
EEGSVRGTGPTPESLEANLGWTEDFLSNIGLSGDTLLDNLRRSADQDVSS
NTLKAILAAQEESRSLLAKLQAELLSTSAYAASKALADSKLLISVGIVVA
SELAQVLARPLLPAPSDSTPQGTPVPPSSPAQGGPWT
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mRNA from alignment at CM002457.1:140566..141557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1248 ID=rna1248|Name=rna1248|organism=Nannochloropsis gaditana|type=mRNA|length=992bp|location=Sequence derived from alignment at CM002457.1:140566..141557- (Nannochloropsis gaditana)
GGTTGAACAGGAACAAACAATCGAAGCGGATTTCCTTTCGAGTCAATTTG
GGGTTTTGGCGACTGCGTGGTATCATCGAGCTATGACATCAACGTGGAGA
TTGATTCCTATTCTTGGTCCGGGTGCTCGATATAATGTGCGCGTATCATG
ACTAACTGCATTGTCACACTCATTTCTTGATAACCGCGTGGATCCCAGGC
CCTGTTATTCATGCTGTGCTGACCGGGACCACCGTCCCGTGCAGGGAGAC
TGCGGGGGGAGGAGGGATACATAGGACGCGATGGCTTGGAAAACTTGTCC
TGCTAGCAAGTACTTGGGCATAATTGTTTTCATGACGGTTCTCGTGGTAT
CTCATGCTTTCCAGTCGTCAGCACCTTGGGTGTCACGTATTGGTACAGCC
AGACGGGAGTTTGTCGCGTCGGAGCGATGCAGGAAAAGCCCTACCCATCC
CCCGTTGTGGGCCGCTCCCGCGACCGAGCCTGCACCGTCCGTGGCACAAG
ACGTAGAAGACGAGGCCAAAGGAGCCCAAGTCACGGAAAGCGATGTTGGA
GGGACCTTGTGGGGTGTGAGGGGACGAGAAGAGGAAGGGTCAGTACGCGG
GACGGGACCAACCCCTGAGAGTCTGGAAGCAAATTTGGGTTGGACTGAAG
ATTTCTTAAGCAATATCGGCCTCTCCGGTGATACCTTGCTCGATAACTTG
CGGAGAAGCGCCGACCAGGATGTGTCCAGCAACACTTTGAAAGCCATTCT
CGCGGCTCAGGAGGAATCTCGCTCCTTACTGGCCAAATTACAAGCTGAAT
TGCTCTCTACAAGTGCTTATGCAGCGTCGAAGGCCTTGGCGGACAGCAAA
CTCTTAATCAGCGTGGGTATCGTCGTGGCATCGGAGCTTGCTCAAGTTCT
GGCGCGGCCATTGCTTCCAGCCCCGTCTGATTCCACCCCCCAAGGCACTC
CTGTTCCTCCCTCAAGCCCAGCCCAAGGGGGGCCTTGGACCC
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Coding sequence (CDS) from alignment at CM002457.1:140566..141557-

>rna1248 ID=rna1248|Name=rna1248|organism=Nannochloropsis gaditana|type=CDS|length=712bp|location=Sequence derived from alignment at CM002457.1:140566..141557- (Nannochloropsis gaditana)
ATGGCTTGGAAAACTTGTCCTGCTAGCAAGTACTTGGGCATAATTGTTTT
CATGACGGTTCTCGTGGTATCTCATGCTTTCCAGTCGTCAGCACCTTGGG
TGTCACGTATTGGTACAGCCAGACGGGAGTTTGTCGCGTCGGAGCGATGC
AGGAAAAGCCCTACCCATCCCCCGTTGTGGGCCGCTCCCGCGACCGAGCC
TGCACCGTCCGTGGCACAAGACGTAGAAGACGAGGCCAAAGGAGCCCAAG
TCACGGAAAGCGATGTTGGAGGGACCTTGTGGGGTGTGAGGGGACGAGAA
GAGGAAGGGTCAGTACGCGGGACGGGACCAACCCCTGAGAGTCTGGAAGC
AAATTTGGGTTGGACTGAAGATTTCTTAAGCAATATCGGCCTCTCCGGTG
ATACCTTGCTCGATAACTTGCGGAGAAGCGCCGACCAGGATGTGTCCAGC
AACACTTTGAAAGCCATTCTCGCGGCTCAGGAGGAATCTCGCTCCTTACT
GGCCAAATTACAAGCTGAATTGCTCTCTACAAGTGCTTATGCAGCGTCGA
AGGCCTTGGCGGACAGCAAACTCTTAATCAGCGTGGGTATCGTCGTGGCA
TCGGAGCTTGCTCAAGTTCTGGCGCGGCCATTGCTTCCAGCCCCGTCTGA
TTCCACCCCCCAAGGCACTCCTGTTCCTCCCTCAAGCCCAGCCCAAGGGG
GGCCTTGGACCC
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Synonyms
Publications