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Properties
| Property Name | Value |
|---|
| Product | ribosomal protein s27a |
| Orig transcript id | gnl|cribi|Naga_100305g7.5917.mrna |
| Orig protein id | gnl|cribi|Naga_100305g7.5917 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:137689..138786 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1246 ID=rna1246|Name=rna1246|organism=Nannochloropsis gaditana|type=mRNA|length=5086bp
GTGACCGTGTCTGGATAAAAGGCGAAAGGCCGACCAACTTCCTGCACAGT
CTCAAATTTGTAGTCGAGCATCGACTGTCCCCCTCAAAGGAAGTAGCGGA
ACCCAGGGACTCAAATAAAAGCGGAATAGCAGCGCTCTTGGTGGCGGTAG
AAATAGTCGAGCAACGTTCAAAAATATGTCAGAGACGTCTTCCTTTGGCA
TTCTCATCGTAGGCCTAGGGGGAAATAATGGAGTGACCTTGCTGGCTGGT
CTCCGGGCCAATCAGCTCGGTTTGGAATGGGAGGCGCCGACTGGAAAGGT
TAAGGCGAATTACTTAGGATGTATTACGCAACTGCCAAAAAAAGGTGGAA
AGGGAGGATACAAGGAGGCATACGAGCTGGCCGATGCAAATCGGGCCGCA
GTGGGAGGATGGGACATTCGCTCGACCCCACTCGGCGACGCCCTGTATGC
TAGCCACGTCTTGGACTATGACCTCGTGCGGCAAGTGCGCGCGTCCCTGA
ACCAAGTGGAAAAATGGAAAGGTGTCTGGGATCCGTCGTTCATTGGTGAA
AGCCAGCATGCTACGGCCACGAACGCGGTGGATTTGAGCACCACCACCCA
CGCCCAGGCGCTGGCCCTCCTGCGAGCAGACATTCGACGTTTTCGGCGCC
TACACAACATCCCTTTGGCCGGGCATATCACCGTAATCTGGTCCGCAAGT
GTGGAACGCCCAAGCCTGGGCGACTATCCTACTGCCACCGCCTTGTTGGC
TGGCATCGAGGCTAACGACCCTGAAGTCTCCCCATCCTTGCTGTATGCGG
CAGCGGCCTGCCTGGAAGGCTGCTCTTTCGTGAACGGAGGGTCCCAAAAT
ACCCTGTGCCCTGGCTTGACCGAGCTGGCCGCCTCGCGTGCCCAGCTGCA
CACGCCCAACGGGCCCGTGAAAGCCCGGTGCTACGTCCTTGGCACGGACT
TCAAGGCCGGTCAAACCAAGTTCAAAACGGCCGCAGTGGAGTACCTGCGG
GCCTTGGGCCTGGCCCCGACGGTGATTGCCTCCTCCAACCACCTGGGGAA
CAATGACATGCTGAATTTGACGAGCAAGAAAACGCTGGACGCGAAAATGC
GGGTGAAAAGCGACATTTTTGCCGGGTGGGAGGAAGCTATCGACCATCAG
GTCCGGGTCATGTACACCCCTTTCATGGGAGACGAGAAACGGGACGTGGT
CGAGTACACCAGCCTCGGGTTCCTGGGCGCGCCGCACACGATGCTGACCT
ACACTCGCTGCATGGACTCGATACTCTGCGTCCCCCTCATGCTGGACGTG
GCGGTGTGGTGCGATTATTTTGCGCGAAAGAATGTGCCCCCCCGACGGGT
GGCTTTGGCGACCGCCTACCTGTTCAAGGTCCCAGAGGGGGCGGCCAAGG
GCACCGACCCTGGCTTCTTCCATCAGATGGCCGCCTTGGAGGATGTTCTG
GCCGAAACCAAGGAGGGAGGGCGGGAAGGAGGAGTCGGTCGAGGGTTGAC
AAGGAAGGGGTTGGTCAAGGACGTCGAGGGAGGGGGGGGCATGACAGAGC
CCTGGGTGGGAGGGGTGCTATGCGTGGGCCTGAGCTGCTTGGATTTGATG
CTGGTGGGCGCGTCCGGAGACGGGGAGACCTTTGGGGCCATAAACACCTT
TCAAACGCAGGTGTTTTGCCCGGGCGGCGCGGCGCCACAGGCCTCTGTGG
CCTTGGCGGACATGCTGGGGATGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GAGAGGGAATGCGCCTTTACTACGTCCATCGTCCACGTCTTGACCAAAAT
GGGTCGGGACGTGCACGGAGACGAGCTGCTGCGGCAGTTAGAACAGGCGG
GGACCGACACATCCCTGGTCATCCGAGACGCTCAGCATTGCACCAGTTTG
GCGGTGCTGCCCATTTTGGCCTCTTCAGGTGCCCGGGGCTGCTTTGTGAA
CCTGCAGGCGAACGATTCCTTCACCCCGGGGGAGGCCTTGGCTGCCCTGA
GGGAGGGAGTGCGAGCAGGCGAGGTCCAGGGCGTGGCCGCGTTTCACTTT
GGGTACCCCCACCTGATGATCAATTTCCAAGGTCCAGCCTTGCGCGATTT
TTTCCAAGCAGCGGCAGAAATTCTAGATGGGGTCAATGGGGGGGAGAAGG
AGGTGGGAAGGCGCCCCGCGAGGAGAAGACTGTTGATAAGCATGGACTTG
AACGGAGTAACGACGCGAAACAGCGAGCCGGATGTCCTGGCGGAGGCATG
GGCGATGACGGACGTGCTACATTTGAATCAGGAGGAGGCTGGCTTGCTCT
TGGACTGGGAGGCGACGGGCCTGGGTGCCTTCGACGAGGTCCTCTCCCTC
CCTTCCCTGCGGGCGGTAGGGGATGCTTTGCTGCAAAATGGCCTGGGCGT
CGTGGCCCTGACGCTGGGGGAGCAGGGGGCGTACGTCAAGGTCACAAATG
ATGAAAAACGCTTGCAGGCGTCCGCAACCTTGGCGTGGCAGGCTGCCAAG
TGGGTCGGTCAGGAGGCCTTTTTACCTCCCTTTCCCGTGCAAGCGGGCGC
AGAGGTGAATACGAATGGGGCCGGCGACGCCTTCATTGCAGGGCTATTGG
CGGCGATGCTCTGTAAGACTGAGTCGTTGAGTCTGAAGCAAGCCACTTGC
TTCGCTTTGCTGACAGCCCGGGAGCGAGTTGACTCTTTACGACGGGCCAG
TACGCCCAAGGCTTCGTACAACGAACTTTTGGCGGAGGCGATGAACTTGA
AAGGAAACCGCGCGCTTAGGCTTCAGAGGATGAGGCGGCGACGACCGTCA
TGGCTCTACAGAGGCATTTCCGCCTTTTCGACGGTGATGCTTTGCGTGAA
TGTGGTGCATGCCACACCATCAAGAGGGTTCTCGAGGCATGATTTGCCTC
CCCACAGCAGCGCGTTCATCCCCCGCCTCCCCGTCTCAAGGGCATGCCAA
GGACCCGATCGAGGCCCCGCCACTGACAAAAACACCAGAAGGAGCAGCAT
TCGTAAGATGGCCATGTCAATCAACCATCGAAAACCGCCAAGAAAATACC
GTGGGCCCATCCAGGGTTACCGCGACGAACCCCTCCACCACATTCCCCCA
CCTCAAAGCGCCCCACGTCCCATACCCACGCCCTCCTCCTCTTCCCCCTC
TCCACCCTCCTCCGCACGAGCACCTCGCATTGCGGCCAGTATTCCCCTCT
CGAAAGCAGCCAGTGCTGCCGCAGCCTCTCCGTTTGAGCCGTTGCACCCG
AGCCTTTCTCACTTCCCCCCGTCCTCCCCCTCCACCTCGCCCTCCGCCGC
CGGCGCGGCTACTCAGGGGTCTCATCCCACGTACAAACTCCCTTCCCAGA
CCGTGGAATGGCAGCGACTGGTCCGCCACGCGGCAGAAATCAAGGCCTTA
CACTTGCGGCACTTGGTCCAAGACCCGGTGCGATCGGATGCTTTGTGCGT
GGATTATGACGGTGTGTACATGGACTACAGCCGGCAACAGATGACAATGG
AGACGCGGACGCTCTTGATCGAGCTGGCCAAGCGGACGCAGGTTGGGGAG
AAAGTGGCGGCCATGGCTCGAGGCGAGAAGATCAACCACACGGAAGGCCG
GGCCGTGCTGCACATGGCCACGCGGGCGGGCCGGGAGGAAAGCGTGGTGG
TCGACGGGGTAGACGTGGTCCGCCAAGTCCACAGGGTGCTGGACAAGGTC
AAGGCTTTTTCAGAGGGGGTCCGCCAGGGCACGATTCGGGGGGCGACGGG
CAAGCGGATCCGGAACATTGTGGCCGTGGGCATTGGGGGCAGCTACCTAG
GGCCCGCCTGCATCCACGAGGTGTTCAAGACGGAGGAGGAAGGCTCGCAG
TCCTGCCGGGACTTTCGGCTCCGTTTCCTCTCGAACGTGGACCCGGTAGA
CGTGGCCCGGGCCCAGGAGAAACTCGACCCGGAGGAGACCTTGGTGGTAG
TGGTCAGCAAGTCCTTTGCCACCGCCGAGACCATGCTGAACGCGCGGACG
ATGCGGCAATGGCTGTGGGACGGCATGGGCACCCACCCGGATGTATGTGC
CAAACACATGGCGGCCTGTGCTTCCGCCTCGGCCACGCAGTTGGTGGAGG
CGTTCGGAATTCCGGGCGAACGTCTTTTTGAATTTTGGGACTGGGTGGGC
GGCCGTTACAGCGTCTGCGCCTCCCCAGGGGCCTTGCCCATCTCGCTGAA
ATTCGGCTTCTCGGTCTTCGAAAAATTCTTGGCGGGGGCTCGGAGCATGG
ACCGTCACTTCCTCACTGCCCCTTTCGAGAAGAATTTGCCCGTCCTGATG
GGTCTTTTGGGGGTGTGGAACATGTCTTTCCTGGGCTACCGTTGTCGGAC
GATCATCCCGTACGCGGAGGCGATGATGAAATTCCCCGCGCACATCCAGC
AGGTGGACATGGAGAGCAACGGCAAGCACGTGACGGTGGACGGGGAGGAG
ATCAACTACGACATTGGCGAGATTGATTTCGGGGAGCCAGGCACCAACGG
CCAGCATTCTTTCTTCCAGCTCTTGCACATGGGCCAGGTGGTCCCCGTGG
ATTTTATCGGGTTCGCCGAGTCCCAAAAAGCCTTGCACGTGGCGGGGGAA
GAATTGTCCTCCCACGATGAGCTCATGTGCAATTTCTTTGCCCAACCGGA
TGCCCTGGCCGTTGGGAAAACGGGGGCCGAGTTGCTGGCCGAAGGGATCC
CGCCCGACCACGTCCCGCACCGGACCTTCAAAGGCAACCGTCCTTCCCTC
TCCTTGTTGCTCCCCCGCCTGAACGCGTATTCCATGGGGCAGCTCTTGGC
CCTCTACGAGCATCGAACCGCCGTCCAGGGCTTTGTGTGGCACGTGAATT
CCTTCGACCAGTGGGGGGTGGAGCTGGGGAAGCAGCTGGCAAAGTCGGTC
CGGGAGGAGATGAAATTGGCGCGGACAGGGCAGGCTCCGAATTTGCATGC
ATTGGTGCCCGCAACGGCACGCATCTTGCAGCGGTACTGGAGGGGTGGGG
GGGGGAAGGGGGGCAAGGAAAGGAGTCTGGGGGCGAGGAGGGTTTGGGGG
AAAGCCGGGAGGAACGGGAGGGGCTCGGGCATGTGA back to topprotein sequence of rna1246 >rna1246-protein ID=rna1246-protein|Name=rna1246|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKL
ATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFTS
TPAV back to topmRNA from alignment at CM002457.1:137689..138786+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1246 ID=rna1246|Name=rna1246|organism=Nannochloropsis gaditana|type=mRNA|length=1098bp|location=Sequence derived from alignment at CM002457.1:137689..138786+ (Nannochloropsis gaditana)
TATGTGCGTTGGGAGACAAAAACTTGGAAGACTGGAGGAGCTGAGGacca
tccatctcctcccttgctccctcgcTGCTTCTTCGTTGCTCACAGCAGGA
TTACACGCAATCTGAAAGCTTTGACAAGGCTTTGACGCACGCATTGAGAA
AATGTCGTAATTGAGCGTAGTAATCAAGGACACAGACGGTGGTGACCTGG
AGATAAAGTGCTGCCAAGGCATCTTTTCTACTGTCATCCATCCTACACAC
CGTGCCTCGGTCTCGTCCCGGTCTCATCCCATTTCTCACTCTTTTCTATT
TTGCAGGCGGATCTGTTTCAACCATGCAGATCTTCGTCAAGACCCTGACG
GGCAAGACCATCACATTGGATGTCGAGCCCAGCGATACCATCGAAAATGT
GAAGCAAAAGATtcaagacaaggagggcattCCCCCCGATCAGCAGCGCC
TAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTAC
AACATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGG
GGGCAAGAAGCGCAAGAAGAAGGTATACACGAAACCCAAGAAGATCAAGC
ATAAGCACAAGTCTGTGAAACTGGCCACCCTGAAATTTTATaaggtggag
gatggaggcaaggTGAAGCGTTTGCGAAAGGATTGCCCGGATTGCGGTGC
GGGTGTTCGCCTGGCTGTGCATGCTGACCGGTACTACTGCGGCAGGTGCA
CTGTGGCGGTGAGTTgggagaggcgaagggcgggaggacgggagggaggg
agggagggagggagcgagggaggagaagagggagggaaacagggaAAGAA
GACTAGACCACACTTTTCTGCAGTAGTCACATATCTTGAAAAATAACGCA
TGTAGACACGAGCTCAATCTCTCAATTACTCGGACCCGCACCTCGTCACA
GTACAAATTCACGTCGACGCCAGCGGTATGAGGCGGCGGCTccaaggaag
ggggtaggCCATGACTATACCTGCAGTGATATCCTGGTctaggtgggagg
gggatggggtctcagacgcggaggagggagcgggacgagggggaaggg back to topCoding sequence (CDS) from alignment at CM002457.1:137689..138786+ >rna1246 ID=rna1246|Name=rna1246|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at CM002457.1:137689..138786+ (Nannochloropsis gaditana)
ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGT
CGAGCCCAGCGATACCATCGAAAATGTGAAGCAAAAGATtcaagacaagg
agggcattCCCCCCGATCAGCAGCGCCTAATTTTCGCAGGAAAGCAGCTG
GAAGACGGACGCACGCTGTCTGACTACAACATTCAGAAAGAGTCAACCTT
GCACTTGGTCTTGCGCTTGCGTGGTGGGGGCAAGAAGCGCAAGAAGAAGG
TATACACGAAACCCAAGAAGATCAAGCATAAGCACAAGTCTGTGAAACTG
GCCACCCTGAAATTTTATaaggtggaggatggaggcaaggTGAAGCGTTT
GCGAAAGGATTGCCCGGATTGCGGTGCGGGTGTTCGCCTGGCTGTGCATG
CTGACCGGTACTACTGCGGCAGGTGCACTGTGGCGTACAAATTCACGTCG
ACGCCAGCGGTATGAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGAC
CATCACATTGGATGTCGAGCCCAGCGATACCATCGAAAATGTGAAGCAAA
AGATtcaagacaaggagggcattCCCCCCGATCAGCAGCGCCTAATTTTC
GCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAACATTCA
GAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGGGGGCAAGA
AGCGCAAGAAGAAGGTATACACGAAACCCAAGAAGATCAAGCATAAGCAC
AAGTCTGTGAAACTGGCCACCCTGAAATTTTATaaggtggaggatggagg
caaggTGAAGCGTTTGCGAAAGGATTGCCCGGATTGCGGTGCGGGTGTTC
GCCTGGCTGTGCATGCTGACCGGTACTACTGCGGCAGGTGCACTGTGGCG
TACAAATTCACGTCGACGCCAGCGGTATGA back to top
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