EWM29431.1, cds1245 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|585111962|gb|EWM29431.1| (ribosomal protein s27a [Nannochloropsis gaditana]) HSP 1 Score: 312.768 bits (800), Expect = 7.556e-108 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFTSTPAV 154
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFTSTPAV
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFTSTPAV 154
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961374714|gb|ALS04101.1| (40S ribosomal protein S27a [Acartia pacifica]) HSP 1 Score: 248.825 bits (634), Expect = 1.227e-82 Identity = 122/155 (78.71%), Postives = 134/155 (86.45%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFTSTPA 153
MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKK+ YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP +CGAGV +A H DR CG+C + Y F A
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKENYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPSEECGAGVFMAAHFDRQTCGKCGLTYVFNKPAA 155
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|1214680403|gb|OWY99641.1| (Ubiquitin [Phytophthora megakarya]) HSP 1 Score: 228.794 bits (582), Expect = 1.184e-74 Identity = 125/150 (83.33%), Postives = 138/150 (92.00%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDC--PDCGAGVRLAVHADRYYCGRCTVAYKF 148
MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YTKPKKIKHKH+ VKLA LK+YKV+D GK++RL+K+C P CGAGV +A H DR+YCG+C V Y+F
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTKPKKIKHKHRKVKLAVLKYYKVDDNGKIQRLKKECPAPQCGAGVFMATHFDRHYCGKCHVTYQF 150
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|748547656|emb|CDO94046.1| (unnamed protein product [Kluyveromyces dobzhanskii CBS 2104]) HSP 1 Score: 224.942 bits (572), Expect = 3.064e-73 Identity = 121/146 (82.88%), Postives = 133/146 (91.10%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAY 146
MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYT PKKI+HKHK+VKLA L +YKV+D GKV +LRK+CP+CGAG+ LA H DRYYCG+C +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIRHKHKNVKLAVLNYYKVDDEGKVAKLRKECPNCGAGIFLANHGDRYYCGKCHSTF 146
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961376172|gb|ALS04830.1| (hypothetical protein [Pseudodiaptomus poplesia]) HSP 1 Score: 223.016 bits (567), Expect = 2.808e-72 Identity = 123/151 (81.46%), Postives = 134/151 (88.74%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFT 149
MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP +CGAGV +A H DR YCG+C + Y F
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKITRLRRECPGEECGAGVFMAAHFDRQYCGKCGLTYVFN 151
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|509391726|gb|AGN29644.1| (40S ribosomal protein S27a [Acartia pacifica] >gi|961374716|gb|ALS04102.1| 40S ribosomal protein S27a [Acartia pacifica]) HSP 1 Score: 221.861 bits (564), Expect = 6.457e-72 Identity = 123/155 (79.35%), Postives = 134/155 (86.45%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFTSTPA 153
MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP +CGAGV +A H DR CG+C + Y F A
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPSEECGAGVFMAAHFDRQTCGKCGLTYVFNKPAA 155
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961375722|gb|ALS04605.1| (ubiquitin-40S ribosomal protein S27a [Pseudodiaptomus poplesia]) HSP 1 Score: 221.476 bits (563), Expect = 9.903e-72 Identity = 123/151 (81.46%), Postives = 133/151 (88.08%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFT 149
MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP CGAGV +A H DR YCG+C + Y F
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKITRLRRECPGEGCGAGVFMAAHFDRQYCGKCGLTYVFN 151
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|50307755|ref|XP_453871.1| (ubiquitin-40S ribosomal protein S31 fusion protein [Kluyveromyces lactis NRRL Y-1140] >gi|302393747|sp|P69061.2|RS27A_KLULA RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=40S ribosomal protein S27a; Flags: Precursor >gi|704360269|pdb|3J80|FF Chain f, Cryoem Structure Of 40s-eif1-eif1a Preinitiation Complex >gi|704360319|pdb|3J81|FF Chain f, Cryoem Structure Of A Partial Yeast 48s Preinitiation Complex >gi|914684548|pdb|3JAM|FF Chain f, Cryoem Structure Of 40s-eif1a-eif1 Complex From Yeast >gi|5531281|emb|CAB50894.1| ubiquitin fusion protein [Kluyveromyces lactis] >gi|49643005|emb|CAH00967.1| KLLA0D18304p [Kluyveromyces lactis]) HSP 1 Score: 220.32 bits (560), Expect = 2.130e-71 Identity = 119/146 (81.51%), Postives = 131/146 (89.73%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAY 146
MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYT PKKI+HKHK VKLA L +YKV+D GKV +LRK+CP+CG G+ LA H DR+YCG+C +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIRHKHKKVKLAVLNYYKVDDEGKVAKLRKECPNCGPGIFLANHGDRFYCGKCHSTF 146
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961376338|gb|ALS04913.1| (ubiquitin-40S ribosomal protein S27a [Pseudodiaptomus poplesia]) HSP 1 Score: 220.32 bits (560), Expect = 2.432e-71 Identity = 122/151 (80.79%), Postives = 133/151 (88.08%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFT 149
MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQ EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP +CGAGV +A H DR YCG+C + Y F
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQSEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKITRLRRECPGEECGAGVFMAAHFDRQYCGKCGLTYVFN 151
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|1063245714|gb|ODQ68473.1| (ubiquitin [Nadsonia fulvescens var. elongata DSM 6958]) HSP 1 Score: 220.32 bits (560), Expect = 2.565e-71 Identity = 120/146 (82.19%), Postives = 131/146 (89.73%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAY 146
MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYT PKKI HKHK VKLA L +YKV+ GKV+RLR++CP CGAGV +A HADR YCG+C + +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIAHKHKKVKLAVLNYYKVDSDGKVERLRRECPHCGAGVFMANHADRNYCGKCGLTF 146 The following BLAST results are available for this feature:
BLAST of EWM29431.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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