EWM29431.1, cds1245 (CDS) Nannochloropsis gaditana

Overview
NameEWM29431.1
Unique Namecds1245
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:138012..138446 +
Alignment locationCM002457.1:138640..138669 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29431.1
Productribosomal protein s27a
Orig transcript idgnl|cribi|Naga_100305g7.5917.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:138012..138446 +
CM002457.1supercontigCM002457.1:138640..138669 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR029071Ubiquitin-rel_dom
IPR019954Ubiquitin_CS
IPR002906Ribosomal_S27a
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|585111962|gb|EWM29431.1| (ribosomal protein s27a [Nannochloropsis gaditana])

HSP 1 Score: 312.768 bits (800), Expect = 7.556e-108
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFTSTPAV 154
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFTSTPAV
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAYKFTSTPAV 154          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961374714|gb|ALS04101.1| (40S ribosomal protein S27a [Acartia pacifica])

HSP 1 Score: 248.825 bits (634), Expect = 1.227e-82
Identity = 122/155 (78.71%), Postives = 134/155 (86.45%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFTSTPA 153
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKK+ YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP  +CGAGV +A H DR  CG+C + Y F    A
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKENYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPSEECGAGVFMAAHFDRQTCGKCGLTYVFNKPAA 155          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|1214680403|gb|OWY99641.1| (Ubiquitin [Phytophthora megakarya])

HSP 1 Score: 228.794 bits (582), Expect = 1.184e-74
Identity = 125/150 (83.33%), Postives = 138/150 (92.00%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDC--PDCGAGVRLAVHADRYYCGRCTVAYKF 148
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YTKPKKIKHKH+ VKLA LK+YKV+D GK++RL+K+C  P CGAGV +A H DR+YCG+C V Y+F
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTKPKKIKHKHRKVKLAVLKYYKVDDNGKIQRLKKECPAPQCGAGVFMATHFDRHYCGKCHVTYQF 150          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|748547656|emb|CDO94046.1| (unnamed protein product [Kluyveromyces dobzhanskii CBS 2104])

HSP 1 Score: 224.942 bits (572), Expect = 3.064e-73
Identity = 121/146 (82.88%), Postives = 133/146 (91.10%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAY 146
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYT PKKI+HKHK+VKLA L +YKV+D GKV +LRK+CP+CGAG+ LA H DRYYCG+C   +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIRHKHKNVKLAVLNYYKVDDEGKVAKLRKECPNCGAGIFLANHGDRYYCGKCHSTF 146          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961376172|gb|ALS04830.1| (hypothetical protein [Pseudodiaptomus poplesia])

HSP 1 Score: 223.016 bits (567), Expect = 2.808e-72
Identity = 123/151 (81.46%), Postives = 134/151 (88.74%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFT 149
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP  +CGAGV +A H DR YCG+C + Y F 
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKITRLRRECPGEECGAGVFMAAHFDRQYCGKCGLTYVFN 151          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|509391726|gb|AGN29644.1| (40S ribosomal protein S27a [Acartia pacifica] >gi|961374716|gb|ALS04102.1| 40S ribosomal protein S27a [Acartia pacifica])

HSP 1 Score: 221.861 bits (564), Expect = 6.457e-72
Identity = 123/155 (79.35%), Postives = 134/155 (86.45%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFTSTPA 153
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP  +CGAGV +A H DR  CG+C + Y F    A
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKINRLRRECPSEECGAGVFMAAHFDRQTCGKCGLTYVFNKPAA 155          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961375722|gb|ALS04605.1| (ubiquitin-40S ribosomal protein S27a [Pseudodiaptomus poplesia])

HSP 1 Score: 221.476 bits (563), Expect = 9.903e-72
Identity = 123/151 (81.46%), Postives = 133/151 (88.08%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFT 149
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP   CGAGV +A H DR YCG+C + Y F 
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKITRLRRECPGEGCGAGVFMAAHFDRQYCGKCGLTYVFN 151          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|50307755|ref|XP_453871.1| (ubiquitin-40S ribosomal protein S31 fusion protein [Kluyveromyces lactis NRRL Y-1140] >gi|302393747|sp|P69061.2|RS27A_KLULA RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=40S ribosomal protein S27a; Flags: Precursor >gi|704360269|pdb|3J80|FF Chain f, Cryoem Structure Of 40s-eif1-eif1a Preinitiation Complex >gi|704360319|pdb|3J81|FF Chain f, Cryoem Structure Of A Partial Yeast 48s Preinitiation Complex >gi|914684548|pdb|3JAM|FF Chain f, Cryoem Structure Of 40s-eif1a-eif1 Complex From Yeast >gi|5531281|emb|CAB50894.1| ubiquitin fusion protein [Kluyveromyces lactis] >gi|49643005|emb|CAH00967.1| KLLA0D18304p [Kluyveromyces lactis])

HSP 1 Score: 220.32 bits (560), Expect = 2.130e-71
Identity = 119/146 (81.51%), Postives = 131/146 (89.73%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAY 146
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYT PKKI+HKHK VKLA L +YKV+D GKV +LRK+CP+CG G+ LA H DR+YCG+C   +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIRHKHKKVKLAVLNYYKVDDEGKVAKLRKECPNCGPGIFLANHGDRFYCGKCHSTF 146          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|961376338|gb|ALS04913.1| (ubiquitin-40S ribosomal protein S27a [Pseudodiaptomus poplesia])

HSP 1 Score: 220.32 bits (560), Expect = 2.432e-71
Identity = 122/151 (80.79%), Postives = 133/151 (88.08%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCP--DCGAGVRLAVHADRYYCGRCTVAYKFT 149
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQ EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKK YT PKKIKHKH+ VKLA LK+YKV+D GK+ RLR++CP  +CGAGV +A H DR YCG+C + Y F 
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQSEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHRKVKLAVLKYYKVDDNGKITRLRRECPGEECGAGVFMAAHFDRQYCGKCGLTYVFN 151          
BLAST of EWM29431.1 vs. NCBI_GenBank
Match: gi|1063245714|gb|ODQ68473.1| (ubiquitin [Nadsonia fulvescens var. elongata DSM 6958])

HSP 1 Score: 220.32 bits (560), Expect = 2.565e-71
Identity = 120/146 (82.19%), Postives = 131/146 (89.73%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIKHKHKSVKLATLKFYKVEDGGKVKRLRKDCPDCGAGVRLAVHADRYYCGRCTVAY 146
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYT PKKI HKHK VKLA L +YKV+  GKV+RLR++CP CGAGV +A HADR YCG+C + +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTTPKKIAHKHKKVKLAVLNYYKVDSDGKVERLRRECPHCGAGVFMANHADRNYCGKCGLTF 146          
The following BLAST results are available for this feature:
BLAST of EWM29431.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111962|gb|EWM29431.1|7.556e-108100.00ribosomal protein s27a [Nannochloropsis gaditana][more]
gi|961374714|gb|ALS04101.1|1.227e-8278.7140S ribosomal protein S27a [Acartia pacifica][more]
gi|1214680403|gb|OWY99641.1|1.184e-7483.33Ubiquitin [Phytophthora megakarya][more]
gi|748547656|emb|CDO94046.1|3.064e-7382.88unnamed protein product [Kluyveromyces dobzhanskii... [more]
gi|961376172|gb|ALS04830.1|2.808e-7281.46hypothetical protein [Pseudodiaptomus poplesia][more]
gi|509391726|gb|AGN29644.1|6.457e-7279.3540S ribosomal protein S27a [Acartia pacifica] >gi|... [more]
gi|961375722|gb|ALS04605.1|9.903e-7281.46ubiquitin-40S ribosomal protein S27a [Pseudodiapto... [more]
gi|50307755|ref|XP_453871.1|2.130e-7181.51ubiquitin-40S ribosomal protein S31 fusion protein... [more]
gi|961376338|gb|ALS04913.1|2.432e-7180.79ubiquitin-40S ribosomal protein S27a [Pseudodiapto... [more]
gi|1063245714|gb|ODQ68473.1|2.565e-7182.19ubiquitin [Nadsonia fulvescens var. elongata DSM 6... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1246rna1246Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications