rna1236, rna1236 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1236
Unique Name	rna1236
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1763
Alignment location	CM002457.1:118486..119993 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100083g1.6765.mrna
Orig protein id	gnl\|cribi\|Naga_100083g1.6765
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:118486..119993 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100083g1	gene1190	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1236	rna1236-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29438.1	cds1235	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:118486..119993+
coding sequence from alignment at CM002457.1:118486..119993+

mRNA sequence

>rna1236 ID=rna1236|Name=rna1236|organism=Nannochloropsis gaditana|type=mRNA|length=1763bp
AGGACGAGTGCACACGAGACACTAAGGCTTCGACAAATGTGTTTGTACGG
CCCAGTGTCAACAAGATCATGAACAGCAGTAATGTGTTACGCGGTGGCTG
CAGAGTGCAAACGATGGGGAAGTGGCGACCAAGACGCTTGAGCATGGAAA
TGGGCGACTATCACCTACCACAAGACCTGCCGCAGGGTCTCAAACGCACA
AATATGTCCCTGAATGCCTGTGTGACCATTTGGGGGGGGTGAGAGGGTGT
CAAATCCATGCAAATTGAAGCTTACTGGGATTGGACGTGCTCTCGCTCAT
AGACCGTGTAGAAAGCAGCCCCCAACGGCCCAACGCTCTTCGACTGAGAA
AATGGCGTTTAGAAAATTCAACTTCGCATAACGAGCCATGTATTACAGTC
GCTAGTCTGTCTGGCACAACAGGTTGGTAAGGTGCTTAGAAACAAGACAT
TTCAGGACTCCTGTTTTCCTTCTTCGGTCCAAGTCTCCCGCACGTTTCAC
AACCTCCCCACTTCAACCACGGGCCTTCCTCGACCACCCTCGTTTACAAA
CCCCCCTGCCTCCACGCCGCCATTTTTCCTCCTGTCAAGTGCTCTACTTG
CCCTGGTTATCATTTGCGCAAGCGAAGTGGTGCGAGCCTCTCCAATTCAA
CCGTCTTGGTCGTCCCCCCAAATCGAGTCATCTCCTCAGTCGTTCTCACA
CTTCCTGCCAACACCATTTGACTCCGGCAACGGCAAAAGTCACCAAAAAA
CAAGCAGCAGTAGCACTCATAGCCTGTCCTCAACCATGGGCGAAGCGTCT
GGTAATCCCAGCAAGGGACGTCACCATGACGCACCTTCAGCCACCGGCAT
AGCCAGTCCAAGTGGGAAAACTCTCCCCTCCACCTCTGCCTCCCAAGCAA
GCATGGCTTCGACAGCAGCTTCGCTGACCTCAACCACAAAAGAAGAGCCC
ATGGGCCCCGACCGCCGCACAACAGTCACGACGCCGGGGCAGGTTTCGAA
GACAGGCACAGCGCAGGACTCCCAGGGGGGAAGCCCTGTGGGGAGTGTAA
CCAAGAGAGAGGACTATATATCCTGGGATGACTATTTCATGGGGGTGGCA
TTTCTGTCTGCGATGCGCTCCAAGGATCCGTCTACACAGGTGGGCGCTTG
CCTGGTCGACACTGAGAACAAGATCGTGGGCATTGGTAAAAGAGGGAAGG
AGGGAGGGGCAACGGGAGGGCAAGGCAGCGGAGCAGACCTTTTGCGAGTG
ATGAAGTATTCGATTCGATCAATTGATACAACGGGTTCCCCCGCGGGTGC
AGTGATGATGCCCTCCCATGGGCGCGACAAAGCGATGGGGGATTCCTGGA
CACCAAGTACGCTTACGTCTGTCATGCAGAGATGAACGCGATTTTAAACA
GGAATATTGCTCCTTTACACGACTGTCGTATGTACGTGGCCCTCTTTCCA
TGCAACGAGTGTGCAAAACTCATCATTCAAAGCGGCGTAAAAGACGTGAT
CTATCTTTCTGACAAATATCACGATGACGCCATCATGGTTGCCTCGCGGA
GACTCTTCGATCTGGCCGGGGTCCGGTACCGAAAGCACACGCCTAAAGTG
AATCGTATCACGATTGATTTCTCTAGTGCTTAGAAGTATTCCTCAATCAG
AAAAGTCCGTTTTACCTGGAAAGGAGCAAGGGGCCATGACATCTCAGACT
CCCGATAAAAAGGTACAAGCAACAGAGCATAAAGAACAAGTGTACACCTC
AATGTTGGACAAT

protein sequence of rna1236

>rna1236-protein ID=rna1236-protein|Name=rna1236|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MLKRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSA
FSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTAGLLPY
AYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRA
ALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGE
KMDNPTGRALYAEAGRRTMPV

mRNA from alignment at CM002457.1:118486..119993+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1236 ID=rna1236|Name=rna1236|organism=Nannochloropsis gaditana|type=mRNA|length=1508bp|location=Sequence derived from alignment at CM002457.1:118486..119993+ (Nannochloropsis gaditana)
AAGCACCTTACCAACCTGTTGTGCCAGACAGACTAGCGACTGTAATACAT
GGCTCGTTATGCGAAGTTGAATTTTCTAAACGCCATTTTCTCAGTCGAAG
AGCGTTGGGCCGTTGGGGGCTGCTTTCTACACGGTCTATGAGCGAGAGCA
CGTCCAATCCCAGTAAGCTTCAATTTGCATGGATTTGACACCCTCTCACC
CCCCCCAAATGGTCACACAGGCATTCAGGGACATATTTGTGCGTTTGAGA
CCCTGCGGCAGGTCTTGTGGTAGGTGATAGTCGCCCATTTCCATGCTCAA
GCGTCTTGGTCGCCACTTCCCCATCGTTTGCACTCTGCAGCCACCGCGTA
ACACATTACTGCTGTTCATGATCTTGTTGACACTGGGCCGTACAAACACA
TTTGTCGAAGCCTTAGTGTCTCGTGTGCACTCGTCCTCTGCTTTCTCACT
CAGCCAACGTATTCAGCCGCCGCGTCACTTGCTGAGGATGGcatcaacct
cctctgtcgACTCGGTTAGCAATAAGGACGGATTTCCCTACAGGCTCATC
GACTCGCACCATCACGTCTGGACAGCGGGTTTGCTTCCATATGCATACGC
TGAGGGGCAAAGCGCACCGCCGGGTCTGCAAGAGAAAGGGTGCGTGCATT
CATGTCCACGCAATGGGCTGATGGAGTGCCTTAGAGAGCAGACAGGCTTA
CTGCTAAGACATCGTTGTCCTTTTTGTCACGCCCCTTTTAAACAAATATG
GCGGGCACTCATTCATCAGGAGTGTGGAGGAGTTTCTGGGTCTGGCAGCA
AACGCTGGTGTTCAGCGCTCCTTGATTGTACAGCCTATTCTGTACATGTT
TGATCACTCTTGTAAGTAGCCCGGCTTCCGCTTTATTTTTAGGCTTTCGT
ATCAACGACTCACGGACGAAATCCCAGCCTGGTCAGGTTTCGGACGGCGT
TGTCCCCTTCTACCGGCCCCATCCCCCAATCCGTTCCACACAAGCTAGTC
AATTCTACCCTATAACCGCtgtttttcctctctctatCCACGCGCATGCC
TCGGCAAAACCTGCGTTGCATggcctccgtcttccctcggacctctctct
cctctctttcccagaCGTCCGTGCCGCCTTGGAACGATACCCGGAGAAAT
TCCATGGCATGCTGGTCGCCAACCCAACCCTGTCTCCTCAGGAGGCGACC
GCCGAGCTCGGGCGTTTACAGTCCCAAGGGTTCAACTCCGTCCGGTTCAA
TCCTTACATTTGGCCGGCCGGGGAGAAGGTGCGACGCGAGAAACGtaaaa
ggggaagagagggaccGTAGGGGGGAAGGTATGGGTGTACGGGTGCTCCC
AAGTCAGGCCTATCGGCCCCATGGACGCGTGCCAATCTGActgccctcca
cggccttcatccccaccccctccctccctccctccctccctcctctagaT
GGACAACCCCACCGGGCGAGCCCTGTACGCGGAGGCCGGGCGTCGGACCA
TGCCCGTC

Coding sequence (CDS) from alignment at CM002457.1:118486..119993+

>rna1236 ID=rna1236|Name=rna1236|organism=Nannochloropsis gaditana|type=CDS|length=2652bp|location=Sequence derived from alignment at CM002457.1:118486..119993+ (Nannochloropsis gaditana)
ATGCTCAAGCGTCTTGGTCGCCACTTCCCCATCGTTTGCACTCTGCAGCC
ACCGCGTAACACATTACTGCTGTTCATGATCTTGTTGACACTGGGCCGTA
CAAACACATTTGTCGAAGCCTTAGTGTCTCGTGTGCACTCGTCCTCTGCT
TTCTCACTCAGCCAACGTATTCAGCCGCCGCGTCACTTGCTGAGGATGGc
atcaacctcctctgtcgACTCGGTTAGCAATAAGGACGGATTTCCCTACA
GGCTCATCGACTCGCACCATCACGTCTGGACAGCGGGTTTGCTTCCATAT
GCATACGCTGAGGGGCAAAGCGCACCGCCGGGTCTGCAAGAGAAAGGGAG
TGTGGAGGAGTTTCTGGGTCTGGCAGCAAACGCTGGTGTTCAGCGCTCCT
TGATTGTACAGCCTATTCTGTACATGTTTGATCACTCTTaCGTCCGTGCC
GCCTTGGAACGATACCCGGAGAAATTCCATGGCATGCTGGTCGCCAACCC
AACCCTGTCTCCTCAGGAGGCGACCGCCGAGCTCGGGCGTTTACAGTCCC
AAGGGTTCAACTCCGTCCGGTTCAATCCTTACATTTGGCCGGCCGGGGAG
AAGaTGGACAACCCCACCGGGCGAGCCCTGTACGCGGAGGCCGGGCGTCG
GACCATGCCCGTCATGCTCAAGCGTCTTGGTCGCCACTTCCCCATCGTTT
GCACTCTGCAGCCACCGCGTAACACATTACTGCTGTTCATGATCTTGTTG
ACACTGGGCCGTACAAACACATTTGTCGAAGCCTTAGTGTCTCGTGTGCA
CTCGTCCTCTGCTTTCTCACTCAGCCAACGTATTCAGCCGCCGCGTCACT
TGCTGAGGATGGcatcaacctcctctgtcgACTCGGTTAGCAATAAGGAC
GGATTTCCCTACAGGCTCATCGACTCGCACCATCACGTCTGGACAGCGGG
TTTGCTTCCATATGCATACGCTGAGGGGCAAAGCGCACCGCCGGGTCTGC
AAGAGAAAGGGAGTGTGGAGGAGTTTCTGGGTCTGGCAGCAAACGCTGGT
GTTCAGCGCTCCTTGATTGTACAGCCTATTCTGTACATGTTTGATCACTC
TTaCGTCCGTGCCGCCTTGGAACGATACCCGGAGAAATTCCATGGCATGC
TGGTCGCCAACCCAACCCTGTCTCCTCAGGAGGCGACCGCCGAGCTCGGG
CGTTTACAGTCCCAAGGGTTCAACTCCGTCCGGTTCAATCCTTACATTTG
GCCGGCCGGGGAGAAGaTGGACAACCCCACCGGGCGAGCCCTGTACGCGG
AGGCCGGGCGTCGGACCATGCCCGTCATGCTCAAGCGTCTTGGTCGCCAC
TTCCCCATCGTTTGCACTCTGCAGCCACCGCGTAACACATTACTGCTGTT
CATGATCTTGTTGACACTGGGCCGTACAAACACATTTGTCGAAGCCTTAG
TGTCTCGTGTGCACTCGTCCTCTGCTTTCTCACTCAGCCAACGTATTCAG
CCGCCGCGTCACTTGCTGAGGATGGcatcaacctcctctgtcgACTCGGT
TAGCAATAAGGACGGATTTCCCTACAGGCTCATCGACTCGCACCATCACG
TCTGGACAGCGGGTTTGCTTCCATATGCATACGCTGAGGGGCAAAGCGCA
CCGCCGGGTCTGCAAGAGAAAGGGAGTGTGGAGGAGTTTCTGGGTCTGGC
AGCAAACGCTGGTGTTCAGCGCTCCTTGATTGTACAGCCTATTCTGTACA
TGTTTGATCACTCTTaCGTCCGTGCCGCCTTGGAACGATACCCGGAGAAA
TTCCATGGCATGCTGGTCGCCAACCCAACCCTGTCTCCTCAGGAGGCGAC
CGCCGAGCTCGGGCGTTTACAGTCCCAAGGGTTCAACTCCGTCCGGTTCA
ATCCTTACATTTGGCCGGCCGGGGAGAAGaTGGACAACCCCACCGGGCGA
GCCCTGTACGCGGAGGCCGGGCGTCGGACCATGCCCGTCATGCTCAAGCG
TCTTGGTCGCCACTTCCCCATCGTTTGCACTCTGCAGCCACCGCGTAACA
CATTACTGCTGTTCATGATCTTGTTGACACTGGGCCGTACAAACACATTT
GTCGAAGCCTTAGTGTCTCGTGTGCACTCGTCCTCTGCTTTCTCACTCAG
CCAACGTATTCAGCCGCCGCGTCACTTGCTGAGGATGGcatcaacctcct
ctgtcgACTCGGTTAGCAATAAGGACGGATTTCCCTACAGGCTCATCGAC
TCGCACCATCACGTCTGGACAGCGGGTTTGCTTCCATATGCATACGCTGA
GGGGCAAAGCGCACCGCCGGGTCTGCAAGAGAAAGGGAGTGTGGAGGAGT
TTCTGGGTCTGGCAGCAAACGCTGGTGTTCAGCGCTCCTTGATTGTACAG
CCTATTCTGTACATGTTTGATCACTCTTaCGTCCGTGCCGCCTTGGAACG
ATACCCGGAGAAATTCCATGGCATGCTGGTCGCCAACCCAACCCTGTCTC
CTCAGGAGGCGACCGCCGAGCTCGGGCGTTTACAGTCCCAAGGGTTCAAC
TCCGTCCGGTTCAATCCTTACATTTGGCCGGCCGGGGAGAAGaTGGACAA
CCCCACCGGGCGAGCCCTGTACGCGGAGGCCGGGCGTCGGACCATGCCCG
TC

Synonyms

Publications