EWM29438.1, cds1235 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|585111974|gb|EWM29438.1| (hypothetical protein Naga_100083g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 455.677 bits (1171), Expect = 2.564e-162 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 MLKRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
MLKRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV
Sbjct: 1 MLKRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|397564298|gb|EJK44150.1| (hypothetical protein THAOC_37337, partial [Thalassiosira oceanica]) HSP 1 Score: 117.472 bits (293), Expect = 3.029e-29 Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 0
Query: 84 RLIDSHHHVWTAG-----LLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKM--DNPTGRALYAEAGRRTMPV 221
+ IDSH HVW + PYA + Q P +Q++ + + L A V LIVQPI + FDHSYV A+ RYP+KF GML+ +P+LSP A L L GF VRFNPY+WP G+ M D G A+Y G +PV
Sbjct: 40 KQIDSHLHVWASSDEASSSFPYA-GDDQVPPQSIQDEATPAKLLERMEEAKVDGCLIVQPINHKFDHSYVSDAMRRYPDKFKGMLLHDPSLSPDMAVTRLEELVLAGFCGVRFNPYLWPEGKTMSEDGGNGLAVYKRCGELKVPV 183
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|224002821|ref|XP_002291082.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972858|gb|EED91189.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 120.939 bits (302), Expect = 3.081e-29 Identity = 77/200 (38.50%), Postives = 105/200 (52.50%), Query Frame = 0
Query: 29 LTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWT-----AGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNP--TGRALYAEAGRRTMPV 221
L+LG T +F+ + +++F ++P H +R +T + + ++IDSH H+W + PYA E Q+ P LQ S L AGV SLIVQPI + +DHSYV A++ YP+KF GML+ +P LSPQ A L L GF VRFNPY+WP GE M P G A+Y G +PV
Sbjct: 5 LSLG-TTSFLLLATYAIQPTTSF-----LKPQTHSIRSTATCMLAT---------KVIDSHLHIWATAEEASSHYPYAGPE-QTPPSQLQNVASPTALLEQMNKAGVDGSLIVQPINHKYDHSYVSDAIKAYPDKFKGMLLHDPYLSPQLAVERLEELVLSGFVGVRFNPYLWPEGELMSTPAGCGLAVYKRCGELNVPV 188
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|298706550|emb|CBJ29520.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 117.857 bits (294), Expect = 5.862e-29 Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 0
Query: 127 NAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWP-AGEKMDNPTGRALYAEAGRRTMPV 221
+AG+ +LIVQPI Y FDHSYV A+ ++P KF GM +ANP LSP +A AEL RL QGF VRFNPY+WP GE M + TG AL+ +AG +PV
Sbjct: 3 DAGIGGALIVQPINYKFDHSYVLDAMSKWPGKFKGMCLANPNLSPHDACAELERLHDQGFCGVRFNPYLWPEGGEGMKDDTGVALFRKAGELGLPV 98
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|255073505|ref|XP_002500427.1| (predicted protein [Micromonas commoda] >gi|226515690|gb|ACO61685.1| predicted protein [Micromonas commoda]) HSP 1 Score: 118.242 bits (295), Expect = 1.343e-28 Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 0
Query: 85 LIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
+ID+H HVW + Y YAEG++ P L E S E L A AGV +L+VQPI FDHSYV + +++YP KF G +A+PT EL RL G+ +VRFNP +WP+G KM + GR ++A G R PV
Sbjct: 14 VIDAHLHVWPS-PSAYTYAEGKAPPDSLAEVSSAESLLEQFAKAGVDGALVVQPINLKFDHSYVSSVIDKYPGKFVGCCLADPT-EHGGGVDELRRLLDGGYRAVRFNPGLWPSGTKMTDRVGREMFALCGERNAPV 148
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|449469188|ref|XP_004152303.1| (PREDICTED: uncharacterized protein LOC101220161 [Cucumis sativus] >gi|700197878|gb|KGN53036.1| hypothetical protein Csa_4G011830 [Cucumis sativus]) HSP 1 Score: 118.627 bits (296), Expect = 2.096e-28 Identity = 76/180 (42.22%), Postives = 102/180 (56.67%), Query Frame = 0
Query: 47 SSSAFSLSQRIQP-PRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTA---GLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQ-GFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
SS+A SQ I P LRMAS+SS ++IDSH HVW + Y Y GQ P L G V+ L AGV +LIVQPI + FDHSYV + L +YP KF G +ANP + +L L ++ G+++VRFNPY+WP+G+KM N G+AL++ AG+ +PV
Sbjct: 28 SSAAIFASQSINTNPNFKLRMASSSSSYG---------KVIDSHLHVWASPEEAAAKYPYFPGQE--PTLT--GHVDFLLQSMEEAGVDGALIVQPINHKFDHSYVTSVLNKYPNKFVGCCLANPA-NDGSGIQQLEHLVTKDGYSAVRFNPYLWPSGQKMTNEVGKALFSTAGKLGIPV 193
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|1210530588|dbj|GAX10813.1| (hypothetical protein FisN_1Hh355 [Fistulifera solaris]) HSP 1 Score: 118.242 bits (295), Expect = 2.400e-28 Identity = 71/167 (42.51%), Postives = 95/167 (56.89%), Query Frame = 0
Query: 68 STSSVDSVSNKDGF-PYRL--IDSHHHVWT-----AGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPA-GEK----MDNPTGRALYAEAGRRTMPV 221
S+SS+ +V + G P R+ IDSH HVW A PY Q P L+++ S L AGV +LIVQPI + FDHSYV A++ YP++F GM++ +P++S +A A+L L+ +GF VRFNPY+WP GEK M G ALY G MPV
Sbjct: 18 SSSSLTTVMSLSGIGPNRIKVIDSHLHVWASPEEAAAKFPYV----QDPPDSLKDRASASCLLREMEAAGVDGALIVQPINHKFDHSYVIHAIQTYPDRFKGMMLFDPSMSETDAMAQLQELKEKGFVGVRFNPYLWPKLGEKKWSPMSQGVGLALYKRCGELKMPV 180
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|971511792|dbj|GAQ86399.1| (Amidohydrolase family protein [Klebsormidium nitens]) HSP 1 Score: 117.472 bits (293), Expect = 2.870e-28 Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 0
Query: 84 RLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEK----GSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRL-QSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
R++DSH HVW + E ++ P L +K G+ + L AGV +LIVQP + FDHSYV +AL+++P KF G L+A+PT T EL RL Q GF++VRFNPY+WPAGE+M N GRA++A+AG+ PV
Sbjct: 18 RVLDSHLHVWAS------EEESKTFPYNLSQKPTIPGNTDLLLQEMDVAGVDGALIVQPFDHKFDHSYVSSALKKHPNKFAGCLLADPTPGGG-GTRELERLVQEDGFSAVRFNPYLWPAGEQMTNDIGRAMFAKAGQLGAPV 153
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|743819162|ref|XP_011020814.1| (PREDICTED: uncharacterized protein LOC105123050 [Populus euphratica]) HSP 1 Score: 117.857 bits (294), Expect = 5.747e-28 Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 0
Query: 65 RMASTSSVDSVSNKDGFPYRLIDSHHHVWTA---GLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQ----SQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
RMA++S D+ N P ++IDSH HVW + Y Y GQ P L +G ++ L AGV +LIVQPI + FDHS V + L++YP KF G +ANP E + L L+ G+ +VRFNPY+WP+GEKM N G+AL+++AG +PV
Sbjct: 50 RMATSSGADNKKN----PAKVIDSHLHVWASPEEAAGKYPYFPGQE--PNL--RGDLDFLLQSLEEAGVDGALIVQPINHKFDHSLVTSVLKKYPNKFVGCCLANPA----EDGSGLKHLEELILKDGYRAVRFNPYLWPSGEKMTNDIGKALFSKAGELGVPV 201
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|168068184|ref|XP_001785968.1| (predicted protein [Physcomitrella patens] >gi|162662348|gb|EDQ49223.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 114.775 bits (286), Expect = 3.000e-27 Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 0
Query: 86 IDSHHHVWT----AGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRL-QSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
IDSH HVW A PY + + P GS + L A AGV ++I+QPI + FDHSYV + L++YP+KF GM +A+PT A E+ RL + + F VRFNPY+WP+GEKM N G+A++A+AG +PV
Sbjct: 4 IDSHLHVWASPDEAKKFPYFPGQEPTLP------GSADFLLKNMAEAGVDGAVIIQPINHKFDHSYVSSVLQKYPDKFVGMCLADPTEGGGGAK-EIERLIKEENFKGVRFNPYLWPSGEKMTNELGKAMFAKAGELGVPV 137 The following BLAST results are available for this feature:
BLAST of EWM29438.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|