EWM29438.1, cds1235 (CDS) Nannochloropsis gaditana

Overview
NameEWM29438.1
Unique Namecds1235
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:118778..119124 +
Alignment locationCM002457.1:119255..119346 +
Alignment locationCM002457.1:119600..119763 +
Alignment locationCM002457.1:119934..119993 +

Link to JBrowse

Properties
Property NameValue
End range.
End range119993
Protein idEWM29438.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100083g1.6765.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:118778..119124 +
CM002457.1supercontigCM002457.1:119255..119346 +
CM002457.1supercontigCM002457.1:119600..119763 +
CM002457.1supercontigCM002457.1:119934..119993 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR006992Amidohydro_2
Homology
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|585111974|gb|EWM29438.1| (hypothetical protein Naga_100083g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 455.677 bits (1171), Expect = 2.564e-162
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MLKRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
            MLKRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV
Sbjct:    1 MLKRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|397564298|gb|EJK44150.1| (hypothetical protein THAOC_37337, partial [Thalassiosira oceanica])

HSP 1 Score: 117.472 bits (293), Expect = 3.029e-29
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 0
Query:   84 RLIDSHHHVWTAG-----LLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKM--DNPTGRALYAEAGRRTMPV 221
            + IDSH HVW +        PYA  + Q  P  +Q++ +  + L     A V   LIVQPI + FDHSYV  A+ RYP+KF GML+ +P+LSP  A   L  L   GF  VRFNPY+WP G+ M  D   G A+Y   G   +PV
Sbjct:   40 KQIDSHLHVWASSDEASSSFPYA-GDDQVPPQSIQDEATPAKLLERMEEAKVDGCLIVQPINHKFDHSYVSDAMRRYPDKFKGMLLHDPSLSPDMAVTRLEELVLAGFCGVRFNPYLWPEGKTMSEDGGNGLAVYKRCGELKVPV 183          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|224002821|ref|XP_002291082.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972858|gb|EED91189.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.939 bits (302), Expect = 3.081e-29
Identity = 77/200 (38.50%), Postives = 105/200 (52.50%), Query Frame = 0
Query:   29 LTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWT-----AGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNP--TGRALYAEAGRRTMPV 221
            L+LG T +F+      +  +++F     ++P  H +R  +T  + +         ++IDSH H+W      +   PYA  E Q+ P  LQ   S    L     AGV  SLIVQPI + +DHSYV  A++ YP+KF GML+ +P LSPQ A   L  L   GF  VRFNPY+WP GE M  P   G A+Y   G   +PV
Sbjct:    5 LSLG-TTSFLLLATYAIQPTTSF-----LKPQTHSIRSTATCMLAT---------KVIDSHLHIWATAEEASSHYPYAGPE-QTPPSQLQNVASPTALLEQMNKAGVDGSLIVQPINHKYDHSYVSDAIKAYPDKFKGMLLHDPYLSPQLAVERLEELVLSGFVGVRFNPYLWPEGELMSTPAGCGLAVYKRCGELNVPV 188          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|298706550|emb|CBJ29520.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.857 bits (294), Expect = 5.862e-29
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 0
Query:  127 NAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWP-AGEKMDNPTGRALYAEAGRRTMPV 221
            +AG+  +LIVQPI Y FDHSYV  A+ ++P KF GM +ANP LSP +A AEL RL  QGF  VRFNPY+WP  GE M + TG AL+ +AG   +PV
Sbjct:    3 DAGIGGALIVQPINYKFDHSYVLDAMSKWPGKFKGMCLANPNLSPHDACAELERLHDQGFCGVRFNPYLWPEGGEGMKDDTGVALFRKAGELGLPV 98          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|255073505|ref|XP_002500427.1| (predicted protein [Micromonas commoda] >gi|226515690|gb|ACO61685.1| predicted protein [Micromonas commoda])

HSP 1 Score: 118.242 bits (295), Expect = 1.343e-28
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   85 LIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
            +ID+H HVW +    Y YAEG++ P  L E  S E  L   A AGV  +L+VQPI   FDHSYV + +++YP KF G  +A+PT        EL RL   G+ +VRFNP +WP+G KM +  GR ++A  G R  PV
Sbjct:   14 VIDAHLHVWPS-PSAYTYAEGKAPPDSLAEVSSAESLLEQFAKAGVDGALVVQPINLKFDHSYVSSVIDKYPGKFVGCCLADPT-EHGGGVDELRRLLDGGYRAVRFNPGLWPSGTKMTDRVGREMFALCGERNAPV 148          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|449469188|ref|XP_004152303.1| (PREDICTED: uncharacterized protein LOC101220161 [Cucumis sativus] >gi|700197878|gb|KGN53036.1| hypothetical protein Csa_4G011830 [Cucumis sativus])

HSP 1 Score: 118.627 bits (296), Expect = 2.096e-28
Identity = 76/180 (42.22%), Postives = 102/180 (56.67%), Query Frame = 0
Query:   47 SSSAFSLSQRIQP-PRHLLRMASTSSVDSVSNKDGFPYRLIDSHHHVWTA---GLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQ-GFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
            SS+A   SQ I   P   LRMAS+SS            ++IDSH HVW +       Y Y  GQ   P L   G V+  L     AGV  +LIVQPI + FDHSYV + L +YP KF G  +ANP  +      +L  L ++ G+++VRFNPY+WP+G+KM N  G+AL++ AG+  +PV
Sbjct:   28 SSAAIFASQSINTNPNFKLRMASSSSSYG---------KVIDSHLHVWASPEEAAAKYPYFPGQE--PTLT--GHVDFLLQSMEEAGVDGALIVQPINHKFDHSYVTSVLNKYPNKFVGCCLANPA-NDGSGIQQLEHLVTKDGYSAVRFNPYLWPSGQKMTNEVGKALFSTAGKLGIPV 193          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|1210530588|dbj|GAX10813.1| (hypothetical protein FisN_1Hh355 [Fistulifera solaris])

HSP 1 Score: 118.242 bits (295), Expect = 2.400e-28
Identity = 71/167 (42.51%), Postives = 95/167 (56.89%), Query Frame = 0
Query:   68 STSSVDSVSNKDGF-PYRL--IDSHHHVWT-----AGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPA-GEK----MDNPTGRALYAEAGRRTMPV 221
            S+SS+ +V +  G  P R+  IDSH HVW      A   PY     Q  P  L+++ S    L     AGV  +LIVQPI + FDHSYV  A++ YP++F GM++ +P++S  +A A+L  L+ +GF  VRFNPY+WP  GEK    M    G ALY   G   MPV
Sbjct:   18 SSSSLTTVMSLSGIGPNRIKVIDSHLHVWASPEEAAAKFPYV----QDPPDSLKDRASASCLLREMEAAGVDGALIVQPINHKFDHSYVIHAIQTYPDRFKGMMLFDPSMSETDAMAQLQELKEKGFVGVRFNPYLWPKLGEKKWSPMSQGVGLALYKRCGELKMPV 180          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|971511792|dbj|GAQ86399.1| (Amidohydrolase family protein [Klebsormidium nitens])

HSP 1 Score: 117.472 bits (293), Expect = 2.870e-28
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 0
Query:   84 RLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEK----GSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRL-QSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
            R++DSH HVW +        E ++ P  L +K    G+ +  L     AGV  +LIVQP  + FDHSYV +AL+++P KF G L+A+PT      T EL RL Q  GF++VRFNPY+WPAGE+M N  GRA++A+AG+   PV
Sbjct:   18 RVLDSHLHVWAS------EEESKTFPYNLSQKPTIPGNTDLLLQEMDVAGVDGALIVQPFDHKFDHSYVSSALKKHPNKFAGCLLADPTPGGG-GTRELERLVQEDGFSAVRFNPYLWPAGEQMTNDIGRAMFAKAGQLGAPV 153          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|743819162|ref|XP_011020814.1| (PREDICTED: uncharacterized protein LOC105123050 [Populus euphratica])

HSP 1 Score: 117.857 bits (294), Expect = 5.747e-28
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 0
Query:   65 RMASTSSVDSVSNKDGFPYRLIDSHHHVWTA---GLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQ----SQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
            RMA++S  D+  N    P ++IDSH HVW +       Y Y  GQ   P L  +G ++  L     AGV  +LIVQPI + FDHS V + L++YP KF G  +ANP     E  + L  L+      G+ +VRFNPY+WP+GEKM N  G+AL+++AG   +PV
Sbjct:   50 RMATSSGADNKKN----PAKVIDSHLHVWASPEEAAGKYPYFPGQE--PNL--RGDLDFLLQSLEEAGVDGALIVQPINHKFDHSLVTSVLKKYPNKFVGCCLANPA----EDGSGLKHLEELILKDGYRAVRFNPYLWPSGEKMTNDIGKALFSKAGELGVPV 201          
BLAST of EWM29438.1 vs. NCBI_GenBank
Match: gi|168068184|ref|XP_001785968.1| (predicted protein [Physcomitrella patens] >gi|162662348|gb|EDQ49223.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 114.775 bits (286), Expect = 3.000e-27
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 0
Query:   86 IDSHHHVWT----AGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRL-QSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
            IDSH HVW     A   PY   +  + P      GS +  L   A AGV  ++I+QPI + FDHSYV + L++YP+KF GM +A+PT     A  E+ RL + + F  VRFNPY+WP+GEKM N  G+A++A+AG   +PV
Sbjct:    4 IDSHLHVWASPDEAKKFPYFPGQEPTLP------GSADFLLKNMAEAGVDGAVIIQPINHKFDHSYVSSVLQKYPDKFVGMCLADPTEGGGGAK-EIERLIKEENFKGVRFNPYLWPSGEKMTNELGKAMFAKAGELGVPV 137          
The following BLAST results are available for this feature:
BLAST of EWM29438.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111974|gb|EWM29438.1|2.564e-162100.00hypothetical protein Naga_100083g1, partial [Nanno... [more]
gi|397564298|gb|EJK44150.1|3.029e-2943.45hypothetical protein THAOC_37337, partial [Thalass... [more]
gi|224002821|ref|XP_002291082.1|3.081e-2938.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298706550|emb|CBJ29520.1|5.862e-2957.29conserved unknown protein [Ectocarpus siliculosus][more]
gi|255073505|ref|XP_002500427.1|1.343e-2845.26predicted protein [Micromonas commoda] >gi|2265156... [more]
gi|449469188|ref|XP_004152303.1|2.096e-2842.22PREDICTED: uncharacterized protein LOC101220161 [C... [more]
gi|1210530588|dbj|GAX10813.1|2.400e-2842.51hypothetical protein FisN_1Hh355 [Fistulifera sola... [more]
gi|971511792|dbj|GAQ86399.1|2.870e-2846.15Amidohydrolase family protein [Klebsormidium niten... [more]
gi|743819162|ref|XP_011020814.1|5.747e-2842.07PREDICTED: uncharacterized protein LOC105123050 [P... [more]
gi|168068184|ref|XP_001785968.1|3.000e-2744.68predicted protein [Physcomitrella patens] >gi|1626... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1236rna1236Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications