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Properties
| Property Name | Value |
|---|
| Product | deoxycytidylate deaminase |
| Orig transcript id | gnl|cribi|Naga_100083g2.6791.mrna |
| Orig protein id | gnl|cribi|Naga_100083g2.6791 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:116462..118922 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1234 ID=rna1234|Name=rna1234|organism=Nannochloropsis gaditana|type=mRNA|length=3186bp
ATGCCACATCGGAGGTTGGCGCAAGCCATTGCACGGATGAAAGCCAAAGG
TCCCCCCGCCTTGGACGCTTTGGAGGAACCGACCGAGGACCTCCTCCAAG
ATCTCACCCTAGCTGAGCCTCCCAGTGATAAGGCCCGCGAGGAGAACGTC
GTGGAGGAAGAACAGTATGTGAAGGCCATGCTTGCTCGCTCCTTGAACAT
ATTTAAAAGACTAAAGGACGAGGGGAGCGGGTACCGGGAAGGATGGACGT
TGCTTGAGAAAGAGCTGGTTTTGGAGATGGAATACACGAACTGGGCGGTC
CTCTCGGACCGGACGATCTCGGCCCTGGCGGCCTACCTGCTCGACTTGCT
CGTCTTTGTCGAGAAAACATTTGTGGCAGATGGGGAAGGAGGGACCGAGG
CCTTGACGGAGGGCGGGGCGGAGAGAGGGGCGGCAGCCGCCTCACAGGGC
GATGGAACGGGCCAGGGCAGGCCAACGGTTCCGGACAAGTGTCGAGACGG
TGCCCCCCCGGAGGCCTTGGACTGTGCTTTTGCCACCCTGGACGTGGTGG
AGAAGATGATGGAGGCCCGGTTTTTGAAGTGCATGGGGGACGAGTTGGAG
CGTCCCTTTGACCCGGTGGGATCCCTCCACTTGTACCAAAGCCTGGTCAC
CGCCCTGCGCCTGCTCGTGGCAGTGATGCAATTCGAGGGCTACGAGCCGG
CCCCACCCGTGGAGAAGGAGAAAGTCAAGGCTAAGGAGGGGGAGGAGAAA
GTCAAGGCTAAGGAGGGGGAGGAGAAGAGGAAGGGGAATCGACGACCCCC
TCCCGTGCCCGGGAGCCACGGCCTCGCCCTGTCCCGGTCGGAGTCTTTGT
CGTCCTCCTCCCTGGGCTTGCACGGGACGCACCCCTCCCTCTCCTCGCCC
CGGAACGCCCTTGCGCCCAAGACATTCACCTTCGACGACGCGGCGGGCGA
GTCCCAAGTCCACACCAAAAGCAAAGCCAACGAGCCCCTCCAGTACCTGG
TCACGGTCCTTTACCTCCTCTCCCACACCTCTGTCCAGACCGACGTGACC
GCCTTCTGGGAGGCGCCCGACACGATCGTGGAGGAGCAATGGTCGTCCCG
GAATTTTCAGGCGCTGCTTGCGTGCATTGGCATCGTTCTAGACAAGCTCC
ACCACTCCCCCGACACGGAAGACCAGGCCCTGTTGACGATCCTGGTGGAC
CGGTGGGTGCACACCTTGCATGGACTCGTCTGCACTGATAGCATTGGCCG
GCAAATGTCCGCGACCGTGCCGGAGGAAGACTTGGCCCGGGACTACGAAA
ATGACAAGCCTGGCATCGAATGCCTGACGGGCGTCAGCACTTACTTGGGA
CGTTGGATGGACGTGCGGTGCCTCCCTTGTTCCTGTGTGTTTTGTGGGGT
CCAACGCGCAAGCATGGAATGCATGTTGAGCAAGTGGGACCGCCGCTTGG
CCCATCGCTTGATCGAACTCCAGGGGGTGGCGGTGCTGGGCCGCCTGGCG
TTCTGGTTGTTGGAGTCCTTTCGGAGCATCGAGGTGTCGGGGGACAGCAC
GGGGGAGAATTTGTACCGGACGGACGTGGCTTTGGTCACGCAAGTCGTGC
ATTTAGCCGTCTTGTCGGACTACCAAGTGGCCACCTTGGCCGAGGTGCCC
ACATTGCGGGCCCGAGCCGTGAAACAGGCGATCGATTCCGGGTTTTTGAA
CTTCCTCCTTGCCTACTTTATTCCGCGAAAACTCTGTCGCTTGGAGGATC
GGCGGTGCGAGACGACGGAGGATCAGAACAAGGCACGCCGCTTGGCCCGC
ATTTCCTGCAAAAATTGCATCGAATTTTTGTTGCTGTCTGGGGATGGCTG
GATCACCGACACCTGCTACAATGCCCGTGGGAAGGTGAAAATCGAGAAGT
GGATCAACAAACGAATGGCCCCGGCGGCTCAACGGCTGGTGGAACTGTGG
GTGGAAGACCGCCGCGTGTGTAGGACGGTCGAGGAGCTGCTGGAACACTA
TGCGCCCTTCTTTTTGAAGCTTTCCGAAATCATCCGCCTGTCCGCCCGCT
ACGGGTGCATGAAGGAGCATTGGTCCCAGGACCTGTTGGACGCGTGCGTG
AACGTCTTGTCTACGTACACATACCTATCTGTTTCCCACTACTCCTCGCC
TCAGCCCTCCCCCACGCCCTCCTCCCCGACCCCCCCGCCCTCCCCCTCCC
CCTGCCCTTCGCTCCCTCCCAAGAAGGCCCTCCTTTGCGCCATGGCTACC
TTCACCGACATGTGCTCGCCCTTCTTTGGGGGCTGCGACCATTACTCCTC
CGCCTCCCGGGCCGTGCACGGTTGCCAAGTCCTCAAGCGCCTCTTGGAGG
TGGCCAAGAGCGCACACGCCGTCACAAGCTGCATCCGCGCTCTCTCCTAC
ATCTCACGGGTGGAGCTGGTCGTGCGCGTCTCCTCCACCAAGCCGTGTGC
CCAACGTCAGGCAGGGGATCAGTCCGGGGGGGTCCCGTTGCATCCCCCGC
TCCACGCCACGGCCCCGGCCCCTGTCATGGTCTGCCACCAGTGCCACCGC
CCCCCTACCCTCGATCGTCCCCTCCGGCAGTGCAGTCGTTGTAAGCGGGT
TTTTTATTGCTGCGTGGAATGCCAGCGAGCGAATTGGCGCGAACACGAGA
AGGCCTGCGTTCCTCCCGCAGAGCCTGGGAGCGAGGGAGGGGCGAGCAAG
AGTGGGACCACAGGAGGGGGAGGCATCGGGATGGGCCACATGGTGAACGG
GGTGAGAAGCGATGGACTGGTGAGCAACGGAGGCGGCGCAGGTGCCGGCA
CTGGGGGATTGCACCCTGAGAATGGGAATGGAGGGAGCAGTGCCACGACG
GGAAGCGGGGTGGGGAGTCGAGGGGGAGGGGGAGGGGTGGCCACGAGGGT
AGGAGGGGGGAGCCGGGCGGGCGCGGGAGCGGTGGCGGCATGCTGTGCGC
ATTGTGCGGCGAAGGCGGACAGTGATCGGCAACTGATGACGTGTGGTCGG
TGCCGGGAGGCTTTTTATTGTTCCAAGGACTGCCAGACGCGGCACTGGGT
TGTGCACCGCCGCCAATGCGGGCCGGACCCGTTGTTGGTGTACGGGCAGC
AATTGTGGGATACGGGGGGGTTGCATGCAGGCGGTGGGTGTCGGTACGTG
GAGGACCTTATAGCAGATGGCAATGAACCAAAGTAG back to topprotein sequence of rna1234 >rna1234-protein ID=rna1234-protein|Name=rna1234|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTST
TKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDY
FMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWA
RQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLI
IQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFS
SA back to topmRNA from alignment at CM002457.1:116462..118922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1234 ID=rna1234|Name=rna1234|organism=Nannochloropsis gaditana|type=mRNA|length=2461bp|location=Sequence derived from alignment at CM002457.1:116462..118922- (Nannochloropsis gaditana)
AGGACGAGTGCACACGAGACACTAAGGCTTCGACAAATGTGTTTGTACGG
CCCAGTGTCAACAAGATCATGAACAGCAGTAATGTGTTACGCGGTGGCTG
CAGAGTGCAAACGATGGGGAAGTGGCGACCAAGACGCTTGAGCATGGAAA
TGGGCGACTATCACCTACCACAAGACCTGCCGCAGGGTCTCAAACGCACA
AATATGTCCCTGAATGCCTGTGTGACCATTTGGGGGGGGTGAGAGGGTGT
CAAATCCATGCAAATTGAAGCTTACTGGGATTGGACGTGCTCTCGCTCAT
AGACCGTGTAGAAAGCAGCCCCCAACGGCCCAACGCTCTTCGACTGAGAA
AATGGCGTTTAGAAAATTCAACTTCGCATAACGAGCCATGTATTACAGTC
GCTAGTCTGTCTGGCACAACAGGTTGGTAAGGTGCTTAGAAACAAGACAT
TTCAGGACTCCTGTTTTCCTTCTTCGGTCCAAGTCTCCCGCACGTTTCAC
AACCTCCCCACTTCAACCACGGGCCTTCCTCGACCACCCTCGTTTACAAA
CCCCCCTGCCTCCACGCCGCCATTTTTCCTCCTGTCAAGTGCTCTACTTG
CCCTGGTTATCATTTGCGCAAGCGAAGTGGTGCGAGCCTCTCCAATTCAA
CCGTCTTGGTCGTCCCCCCAAATCGAGTCATCTCCTCAGTCGTTCTCACA
CTTCCTGCCAACACCATTTGACTCCGGCAACGGCAAAAGTCACCAAAAAA
CAAGCAGCAGTAGCACTCATAGCCTGTCCTCAACCATGGGCGAAGCGTCT
GGTAATCCCAGCAAGGGACGTCACCATGACGCACCTTCAGCCACCGGCAT
AGCCAGTCCAAGTGGGAAAACTCTCCCCTCCACCTCTGCCTCCCAAGCAA
GCATGGCTTCGACAGCAGCTTCGCTGACCTCAACCACAAAAGAAGAGCCC
ATGGGCCCCGACCGCCGCACAACAGTCACGACGCCGGGGCAGGTTTCGAA
GACAGGCACAGCGCAGGACTCCCAGGGGGGAAGCCCTGTGGGGAGTGTAA
CCAAGAGAGAGGACTATATATCCTGGGATGACTATTTCATGGGGGTGGCA
TTTCTGTCTGCGATGCGCTCCAAGGATCCGTCTACACAGGTGGGCGCTTG
CCTGGTCGACACTGAGAACAAGATCGTGGGCATTGGTAAAAGAGGGAAGG
AGGGAGGGGCAACGGGAGGGCAAGGCAGCGGAGCAGACCTTTTGCGAGTG
ATGAAGTATTCGATTCGATCAATTGTGAGGTGACACTCAATTCAGCATCC
TGCTGCATCCGGTGATATTGGGAGGGCGTGAGCTGCATTGCCGTAGGGGC
CTGGCGCGTCATTCCCCTCCTCTTCACCCAAAACTGTACCTATCAATTGT
TCTTACATACAACTTTTTGAATTTTTGCTTCATGTTACCACAGGATACAA
CGGGTTCCCCCGCGGGTGCAGTGATGATGCCCTCCCATGGGCGCGACAAA
GCGATGGGGGATTCCTGGACACCAAGTACGCTTACGTCTGTCATGCAGAG
ATGAACGCGATTTTAAACAGGAATATTGCTCCTTTACACGGTGGGTTGAT
AACTGCTTGGGGTTGAGCGACGTGCGGGCCAGTACCGGAGGCAGGAGGGA
CGGCGTAAGGGGAGAGGACAGGGGAAGGAGGGAGGGAGGATCAGGACATG
GGGATTCTCCAGCGGTCCCTATGAAGGGGCTTGCCCCTCTTTTACGGACT
GTGCTTGTTGGATAGGTCTTCAATGCTTGGGTAGGGTTGTCATTCCTGCC
TCGCTGACGTCTTCCTTTGCCCTTTCCATCCTTTTTCCTCCCCTTTCGGC
TTAGACTGTCGTATGTACGTGGCCCTCTTTCCATGCAACGAGTGTGCAAA
ACTCATCATTCAAAGCGGCGTAAAAGACGTGATCTATCTTTCTGACAAAT
ATCACGATGACGCCATCATGGTTGCCTCGCGGAGACTCTTCGATCTGGCC
GGGGTAAGGACAGGAGGCATGGTCTATTGTCTGTCTATACGAGTGTGCGT
AGTCTTGTCACAACACTCGGTTTTTGAGCCATTTTTCTTGTATTTTGATT
GTTTCTTCTTCAACTCTGCATCTTCGTGTCCTGTGCTTCTAAGGGCGGAA
GGGACGATGCCGTGGTGACCGGCCCATGTCGCTTTTTCCCCCTGTTGCAT
ATCTCAGATTTCCTTCTTTTTCATTTTAAATCCCACTTGGCATTTTGGGT
TTCCCATGTCTCTAACAGGTCCGGTACCGAAAGCACACGCCTAAAGTGAA
TCGTATCACGATTGATTTCTCTAGTGCTTAGAAGTATTCCTCAATCAGAA
AAGTCCGTTTTACCTGGAAAGGAGCAAGGGGCCATGACATCTCAGACTCC
CGATAAAAAGGTACAAGCAACAGAGCATAAAGAACAAGTGTACACCTCAA
TGTTGGACAAT back to topCoding sequence (CDS) from alignment at CM002457.1:116462..118922- >rna1234 ID=rna1234|Name=rna1234|organism=Nannochloropsis gaditana|type=CDS|length=3036bp|location=Sequence derived from alignment at CM002457.1:116462..118922- (Nannochloropsis gaditana)
GTCCGGTACCGAAAGCACACGCCTAAAGTGAATCGTATCACGATTGATTT
CTCTAGTGCTTAGACTGTCGTATGTACGTGGCCCTCTTTCCATGCAACGA
GTGTGCAAAACTCATCATTCAAAGCGGCGTAAAAGACGTGATCTATCTTT
CTGACAAATATCACGATGACGCCATCATGGTTGCCTCGCGGAGACTCTTC
GATCTGGCCGGGGATACAACGGGTTCCCCCGCGGGTGCAGTGATGATGCC
CTCCCATGGGCGCGACAAAGCGATGGGGGATTCCTGGACACCAAGTACGC
TTACGTCTGTCATGCAGAGATGAACGCGATTTTAAACAGGAATATTGCTC
CTTTACACGATGGGCGAAGCGTCTGGTAATCCCAGCAAGGGACGTCACCA
TGACGCACCTTCAGCCACCGGCATAGCCAGTCCAAGTGGGAAAACTCTCC
CCTCCACCTCTGCCTCCCAAGCAAGCATGGCTTCGACAGCAGCTTCGCTG
ACCTCAACCACAAAAGAAGAGCCCATGGGCCCCGACCGCCGCACAACAGT
CACGACGCCGGGGCAGGTTTCGAAGACAGGCACAGCGCAGGACTCCCAGG
GGGGAAGCCCTGTGGGGAGTGTAACCAAGAGAGAGGACTATATATCCTGG
GATGACTATTTCATGGGGGTGGCATTTCTGTCTGCGATGCGCTCCAAGGA
TCCGTCTACACAGGTGGGCGCTTGCCTGGTCGACACTGAGAACAAGATCG
TGGGCATTGGTCCGGTACCGAAAGCACACGCCTAAAGTGAATCGTATCAC
GATTGATTTCTCTAGTGCTTAGACTGTCGTATGTACGTGGCCCTCTTTCC
ATGCAACGAGTGTGCAAAACTCATCATTCAAAGCGGCGTAAAAGACGTGA
TCTATCTTTCTGACAAATATCACGATGACGCCATCATGGTTGCCTCGCGG
AGACTCTTCGATCTGGCCGGGGATACAACGGGTTCCCCCGCGGGTGCAGT
GATGATGCCCTCCCATGGGCGCGACAAAGCGATGGGGGATTCCTGGACAC
CAAGTACGCTTACGTCTGTCATGCAGAGATGAACGCGATTTTAAACAGGA
ATATTGCTCCTTTACACGATGGGCGAAGCGTCTGGTAATCCCAGCAAGGG
ACGTCACCATGACGCACCTTCAGCCACCGGCATAGCCAGTCCAAGTGGGA
AAACTCTCCCCTCCACCTCTGCCTCCCAAGCAAGCATGGCTTCGACAGCA
GCTTCGCTGACCTCAACCACAAAAGAAGAGCCCATGGGCCCCGACCGCCG
CACAACAGTCACGACGCCGGGGCAGGTTTCGAAGACAGGCACAGCGCAGG
ACTCCCAGGGGGGAAGCCCTGTGGGGAGTGTAACCAAGAGAGAGGACTAT
ATATCCTGGGATGACTATTTCATGGGGGTGGCATTTCTGTCTGCGATGCG
CTCCAAGGATCCGTCTACACAGGTGGGCGCTTGCCTGGTCGACACTGAGA
ACAAGATCGTGGGCATTGGTCCGGTACCGAAAGCACACGCCTAAAGTGAA
TCGTATCACGATTGATTTCTCTAGTGCTTAGACTGTCGTATGTACGTGGC
CCTCTTTCCATGCAACGAGTGTGCAAAACTCATCATTCAAAGCGGCGTAA
AAGACGTGATCTATCTTTCTGACAAATATCACGATGACGCCATCATGGTT
GCCTCGCGGAGACTCTTCGATCTGGCCGGGGATACAACGGGTTCCCCCGC
GGGTGCAGTGATGATGCCCTCCCATGGGCGCGACAAAGCGATGGGGGATT
CCTGGACACCAAGTACGCTTACGTCTGTCATGCAGAGATGAACGCGATTT
TAAACAGGAATATTGCTCCTTTACACGATGGGCGAAGCGTCTGGTAATCC
CAGCAAGGGACGTCACCATGACGCACCTTCAGCCACCGGCATAGCCAGTC
CAAGTGGGAAAACTCTCCCCTCCACCTCTGCCTCCCAAGCAAGCATGGCT
TCGACAGCAGCTTCGCTGACCTCAACCACAAAAGAAGAGCCCATGGGCCC
CGACCGCCGCACAACAGTCACGACGCCGGGGCAGGTTTCGAAGACAGGCA
CAGCGCAGGACTCCCAGGGGGGAAGCCCTGTGGGGAGTGTAACCAAGAGA
GAGGACTATATATCCTGGGATGACTATTTCATGGGGGTGGCATTTCTGTC
TGCGATGCGCTCCAAGGATCCGTCTACACAGGTGGGCGCTTGCCTGGTCG
ACACTGAGAACAAGATCGTGGGCATTGGTCCGGTACCGAAAGCACACGCC
TAAAGTGAATCGTATCACGATTGATTTCTCTAGTGCTTAGACTGTCGTAT
GTACGTGGCCCTCTTTCCATGCAACGAGTGTGCAAAACTCATCATTCAAA
GCGGCGTAAAAGACGTGATCTATCTTTCTGACAAATATCACGATGACGCC
ATCATGGTTGCCTCGCGGAGACTCTTCGATCTGGCCGGGGATACAACGGG
TTCCCCCGCGGGTGCAGTGATGATGCCCTCCCATGGGCGCGACAAAGCGA
TGGGGGATTCCTGGACACCAAGTACGCTTACGTCTGTCATGCAGAGATGA
ACGCGATTTTAAACAGGAATATTGCTCCTTTACACGATGGGCGAAGCGTC
TGGTAATCCCAGCAAGGGACGTCACCATGACGCACCTTCAGCCACCGGCA
TAGCCAGTCCAAGTGGGAAAACTCTCCCCTCCACCTCTGCCTCCCAAGCA
AGCATGGCTTCGACAGCAGCTTCGCTGACCTCAACCACAAAAGAAGAGCC
CATGGGCCCCGACCGCCGCACAACAGTCACGACGCCGGGGCAGGTTTCGA
AGACAGGCACAGCGCAGGACTCCCAGGGGGGAAGCCCTGTGGGGAGTGTA
ACCAAGAGAGAGGACTATATATCCTGGGATGACTATTTCATGGGGGTGGC
ATTTCTGTCTGCGATGCGCTCCAAGGATCCGTCTACACAGGTGGGCGCTT
GCCTGGTCGACACTGAGAACAAGATCGTGGGCATTG back to top
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