EWM29464.1, cds1233 (CDS) Nannochloropsis gaditana

Overview
NameEWM29464.1
Unique Namecds1233
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:117738..118137 -
Alignment locationCM002457.1:117333..117479 -
Alignment locationCM002457.1:116920..117068 -
Alignment locationCM002457.1:116592..116654 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29464.1
Productdeoxycytidylate deaminase
Orig transcript idgnl|cribi|Naga_100083g2.6791.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:117738..118137 -
CM002457.1supercontigCM002457.1:117333..117479 -
CM002457.1supercontigCM002457.1:116920..117068 -
CM002457.1supercontigCM002457.1:116592..116654 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016787hydrolase activity
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR016192APOBEC/CMP_deaminase_Zn-bd
IPR015517dCMP_deaminase-rel
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|585112000|gb|EWM29464.1| (deoxycytidylate deaminase [Nannochloropsis gaditana])

HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSSA 252
            MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSSA
Sbjct:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSSA 252          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|585111999|gb|EWM29463.1| (deoxycytidylate deaminase [Nannochloropsis gaditana])

HSP 1 Score: 272.322 bits (695), Expect = 1.354e-89
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 0
Query:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNG 137
            MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIG  G
Sbjct:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRG 137          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|926638086|ref|XP_013785045.1| (PREDICTED: deoxycytidylate deaminase-like [Limulus polyphemus])

HSP 1 Score: 259.996 bits (663), Expect = 7.704e-85
Identity = 115/162 (70.99%), Postives = 137/162 (84.57%), Query Frame = 0
Query:   90 KREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
            KR DY+ W DYFM +AFLSAMRSKDP++QVGAC+V+ E KIVGIGYNG P GCSDD LPW R++D   LDTKY YVCHAEMNAILN+N A L DC +YVALFPCNECAKLIIQSG+K+++YLSDKYH+D  MVASR+L D+AGV+YR+H P+ ++I IDF S
Sbjct:   16 KRVDYLQWSDYFMAIAFLSAMRSKDPNSQVGACVVNKEKKIVGIGYNGMPNGCSDDDLPWNREADN-ILDTKYPYVCHAEMNAILNKNSADLKDCTIYVALFPCNECAKLIIQSGIKEIVYLSDKYHNDYKMVASRQLLDMAGVKYRQHIPQHSQILIDFDS 176          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|299115986|emb|CBN75987.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 261.151 bits (666), Expect = 7.070e-84
Identity = 119/162 (73.46%), Postives = 138/162 (85.19%), Query Frame = 0
Query:   90 KREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
            KR DY+ WDDYFM VAFLSAMRSKDPSTQVGAC+V+ + +IVGIGYNGFP GCSDD LPWARQ+D   LDTKY YVCHAEMNAILN+N A +  C +YVALFPCNECAKLIIQSG+++V+YLSDKY +   M ASRRLFDL+GV+ R+H PK ++ITIDFSS
Sbjct:  121 KRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNEDKRIVGIGYNGFPMGCSDDDLPWARQADDE-LDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFDLSGVKCRQHIPKQDKITIDFSS 281          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|929412495|ref|XP_005517703.2| (PREDICTED: deoxycytidylate deaminase isoform X2 [Pseudopodoces humilis])

HSP 1 Score: 256.529 bits (654), Expect = 1.849e-83
Identity = 116/175 (66.29%), Postives = 137/175 (78.29%), Query Frame = 0
Query:   77 QDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
            Q   G S   S  KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIGYNG P GCSDD LPW R+     LDTKY YVCHAE+NAI+N+N A +  C MYVALFPCNECAKLIIQ+G+K+VI++SDKYHD   M A+RR+FDLAG+ YR+  PK N+I IDF S
Sbjct:    8 QQRNGFSSEASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWTRRG-ANRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTTEMTAARRMFDLAGIIYREFKPKCNKIIIDFDS 181          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|998684853|ref|XP_015479925.1| (PREDICTED: deoxycytidylate deaminase isoform X4 [Parus major])

HSP 1 Score: 256.144 bits (653), Expect = 2.377e-83
Identity = 116/175 (66.29%), Postives = 137/175 (78.29%), Query Frame = 0
Query:   77 QDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
            Q   G S   S  KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIGYNG P GCSDD LPW R +    LDTKY YVCHAE+NAI+N+N A +  C MYVALFPCNECAKLIIQ+G+K+VI++SDKYHD   M A+RR+FDLAG+ YR+  PK N+I IDF S
Sbjct:    8 QQRNGFSSEASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWTR-TGANRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTTEMTAARRMFDLAGIIYREFKPKCNKIIIDFDS 181          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|765556693|gb|KJE97002.1| (deoxycytidylate deaminase [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 256.144 bits (653), Expect = 3.059e-83
Identity = 118/193 (61.14%), Postives = 145/193 (75.13%), Query Frame = 0
Query:   59 DRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
            + +T+   P  VS    A          +V KR+DY+ W DYFM VAFLSA RSKDPS+QVGAC+V+ ENKIVGIGYNG P GC+DD LPWAR ++   LDTKY YVCHAE+NA+LN+N + +  C +YVALFPCNECAK+IIQSG+K+VIY SDKYHD    V SRRLFD+AG++YR+H PK+ +ITIDF S
Sbjct:    9 NHQTSTFEPATVSDNAPA----------AVKKRQDYLPWADYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCNDDLLPWARTAESP-LDTKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNECAKIIIQSGIKEVIYKSDKYHDRPEFVVSRRLFDMAGIKYRQHIPKMKQITIDFGS 190          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|1062763905|ref|XP_017926050.1| (PREDICTED: deoxycytidylate deaminase isoform X3 [Manacus vitellinus])

HSP 1 Score: 255.373 bits (651), Expect = 4.871e-83
Identity = 115/175 (65.71%), Postives = 138/175 (78.86%), Query Frame = 0
Query:   77 QDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
            ++ +  S   S  KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V+TENKIVGIGYNG P GCSDD LPW R +    LDTKY YVCHAE+NAI+N+N A +  C MYVALFPCNECAKLIIQ+G+K+VI++SDKYHD   M A+RR+FDLAG+ YR+  PK N+I IDF S
Sbjct:    4 KEVESFSNETSCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDVLPWTRTA-ANRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTMEMTAARRMFDLAGIIYREFKPKCNKIIIDFDS 177          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|695139718|ref|XP_009512287.1| (PREDICTED: deoxycytidylate deaminase, partial [Phalacrocorax carbo] >gi|679191403|gb|KFW81720.1| Deoxycytidylate deaminase, partial [Phalacrocorax carbo])

HSP 1 Score: 254.988 bits (650), Expect = 4.995e-83
Identity = 115/166 (69.28%), Postives = 135/166 (81.33%), Query Frame = 0
Query:   86 GSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
             S  KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIGYNG P GCSDD LPW R +    LDTKY YVCHAE+NAI+N+N A +  C MYVALFPCNECAKLIIQ+G+K+VI++SDKYHD A M A+RR+FDLAGV YR+  PK N+I IDF S
Sbjct:    5 ASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWTRTA-AHRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTAEMTAARRMFDLAGVTYREFKPKCNKIIIDFDS 169          
BLAST of EWM29464.1 vs. NCBI_GenBank
Match: gi|678197209|gb|KFV64191.1| (Deoxycytidylate deaminase, partial [Picoides pubescens])

HSP 1 Score: 254.988 bits (650), Expect = 5.752e-83
Identity = 114/166 (68.67%), Postives = 135/166 (81.33%), Query Frame = 0
Query:   86 GSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCSDDALPWARQSDGGFLDTKYAYVCHAEMNAILNRNIAPLHDCRMYVALFPCNECAKLIIQSGVKDVIYLSDKYHDDAIMVASRRLFDLAGVRYRKHTPKVNRITIDFSS 251
             S TKREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIGYNG P GCSDD LPW R +    LDTKY YVCHAE+NAI+N+N A +  C MYVALFPCNECAKLIIQ+G+K+VI++SDKYHD   M A+RR+FDLAG+ YR+  PK N+I IDF S
Sbjct:    4 ASCTKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWTRTA-AHRLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDTVEMTAARRMFDLAGIIYREFKPKCNKIIIDFDS 168          
The following BLAST results are available for this feature:
BLAST of EWM29464.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112000|gb|EWM29464.1|0.000e+0100.00deoxycytidylate deaminase [Nannochloropsis gaditan... [more]
gi|585111999|gb|EWM29463.1|1.354e-8998.54deoxycytidylate deaminase [Nannochloropsis gaditan... [more]
gi|926638086|ref|XP_013785045.1|7.704e-8570.99PREDICTED: deoxycytidylate deaminase-like [Limulus... [more]
gi|299115986|emb|CBN75987.1|7.070e-8473.46conserved unknown protein [Ectocarpus siliculosus][more]
gi|929412495|ref|XP_005517703.2|1.849e-8366.29PREDICTED: deoxycytidylate deaminase isoform X2 [P... [more]
gi|998684853|ref|XP_015479925.1|2.377e-8366.29PREDICTED: deoxycytidylate deaminase isoform X4 [P... [more]
gi|765556693|gb|KJE97002.1|3.059e-8361.14deoxycytidylate deaminase [Capsaspora owczarzaki A... [more]
gi|1062763905|ref|XP_017926050.1|4.871e-8365.71PREDICTED: deoxycytidylate deaminase isoform X3 [M... [more]
gi|695139718|ref|XP_009512287.1|4.995e-8369.28PREDICTED: deoxycytidylate deaminase, partial [Pha... [more]
gi|678197209|gb|KFV64191.1|5.752e-8368.67Deoxycytidylate deaminase, partial [Picoides pubes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1234rna1234Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications