rna1230, rna1230 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1230
Unique Name	rna1230
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	348
Alignment location	CM002457.1:106469..108621 +

Link to JBrowse

Properties


Property Name	Value
Product	origin recognition complex subunit 4
Orig transcript id	gnl\|cribi\|Naga_100083g6.6766.mrna
Orig protein id	gnl\|cribi\|Naga_100083g6.6766
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:106469..108621 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100083g6	gene1185	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1230	rna1230-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29439.1	cds1229	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:106469..108621+
coding sequence from alignment at CM002457.1:106469..108621+

mRNA sequence

>rna1230 ID=rna1230|Name=rna1230|organism=Nannochloropsis gaditana|type=mRNA|length=348bp
ATGAAAAAGACAAACCCATTGTATCACTCCTCCAGTTCAACGCTCGCAAA
TCAAGCTAGGACGATGGCAACTGTCAAGACTGATACCACTGCGACCGAGC
CCAAGAGCGAAAGTATCACCCTTCGAGTCAAGGATCAGACAGGGGAGGAA
ACCATGTTTAAGGTCAAGAAAACTACCAAGATGGAGAAGGTGTTTGCTTC
CTACGCCGGGCGGAAGGGCGTGAACGTGGATTCCTTGCGGTTTTTACTGG
ATGGACAGCGCATCGAGAAGCACCAGACGTCCGCTGAGCTAGAGCTGGAG
GATGAAGATCAGATTGACGTCATGCTCGAGCAGCTGGGAGGGTGCTAG

protein sequence of rna1230

>rna1230-protein ID=rna1230-protein|Name=rna1230|organism=Nannochloropsis gaditana|type=polypeptide|length=565bp
MLFAMNEGKENRHNATVPPVVRDHIVYLVMGSSAASSPERRKRPRSGGDA
SLCPSSPTPSAPDLDSLEDLRGTPALMSVVSEAQALFKRRLSASYIPPPS
LPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFAR
LRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKK
FTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFAG
QGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIR
SRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEAR
RRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSE
APFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGE
ERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGLLNVLASGLVTLCHRI
PPGGKTYLEHAVHAPGKDFGSLDSVDLGTVPLCIAFYPQDLHDFLVAHEH
SLPALLTRWGSSWTE

mRNA from alignment at CM002457.1:106469..108621+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1230 ID=rna1230|Name=rna1230|organism=Nannochloropsis gaditana|type=mRNA|length=2153bp|location=Sequence derived from alignment at CM002457.1:106469..108621+ (Nannochloropsis gaditana)
ATGCTCTTCGCGATGAATGAAGGTTATTTCCTAATCGGAGTGACCACAGC
ACGCTTAtcctccttcattcccccATTCAAGATGCACTCATCCTGCCGAT
AACGAACCTCCCTCCGTGAACAGACATTATTTTCTTACCTTTCGAAAATA
AAAAGGTAAGGAAAACAGGCACAACGCTACCGTACCACCAGTTGTTCGTG
ATCATATCGTATACCTAGTAATGGGGTCTTCTGCTGCATCCTCACCTGAG
CGGCGGAAACGCCCACGTTCTGGTAAGCGGCTTTCCCTTGTCTctaccct
tccctctcctaTTTGCATGCCGACAAGAATAACAGCATCCGGAGTCTGCG
CCGAAACTTTTCTCTCTTTGctgtcctttcttcctgctcACGTACATACG
ACCTCACCACTCTTGCCCGACCAGGAGGCGATGCCAGCCtgtgcccttct
tccccgacgcCATCAGCCCCCGACTTGGACAGCCTGGAGGACCTCCGAGG
CACCCCCGCCCTGATGAGCGTGGTGTCAGAGGCGCAGGCCCTATTTAAAC
GGCGTCTTTCAGCAAGCtacatccctcctccttcccttccagccccgTTA
GGGCTCGAGACACAGGCGGCTCAAATTTATGAGCTGTTGGTCAAGGCCTT
GGAGAATAAAATGCACGACCCCTTTCTCCTAGTGGGCTCCCGCGGGACGG
GAAAAAGTCTGTGCCTCGAACATGCCTTCGCGCGCCTGCGGGAAAGGTAC
CGGGCCCGGCAAGTGGCTCGGCCGTTCCGGGTCGTGTACGTGGACGGTTG
GTTGGAGAGTACGGACGCGACGGCGATGGCGGAAATTGCGGCGCAGTTGG
AGATGAGCAAAGCCCTGGACACGTCCAAGAAGAAATTTACAGGGGGTAGC
GCGGCAGGTGGTCAAGGGGGTCTGGGCTGTGGGGCCAACCAACATTTGCA
GTTCATTGTGGAGGCGATGCGGCGTGGCACCAGCGAGGAGACGCCCTTGG
TCTTCGTGATCGACCACATCGAAGCATTTGCCGGACAGGGTGgccggggt
ggtggtggcgggggagggaagcagttGTTACTCTACTCTTTGATGGATTT
GCAGCACAGGGAGGACCTGAGttttgtggtggtgggggtctCAAACCAGt
gagtgggaaggggggaggatgcggggCATGGTCAAGGAAGGAATCGTTTG
GGTCCCTACGGATAGGTATGGCATCCCTGTCTgatttcctctccttcctc
cttccctccttccctccttccctccttccctccttccctccctccctcct
tccctccttccctccaaggCTTGACGTCCTGGATCGACTGGAAAAACGCA
TCCGTTCCCGCATTTCCAACAAGCAtatcttctttcccctcgcccactcc
CTAGACCGggtcatcctccccatcctcgcgCAAGCCCTCTCCTTAgacgc
tccctccgcctcttccccggcCGCCCCCACGTCCACCCTGCTCTTCGAGG
CACGACGTCGGTACGCCCATGCATTTAAGCAGGCCTGGgctaccctcctt
ccatccctgcATGGCCTACTGGAATGGCCGCAGAAATTGGGGCGTCCGTT
ACGCTGGTTCACCACCTTAACCTTCCGGGCCGTTTCTCATCTCCAGGGCA
GCGAGGCCCCTTTCCTGACCGTCGCCCATTTCAAGGAGGCATTGCATGCT
CAATCTGCACACGCGACGGCAAATTGCAAGGCGAGCTTTTCCAACTTGGC
GAATTTAGAACTCTTGGTGGTGACGGCCATGAAGCGCCTGGTGGACCGGG
GCGAAGAGCGGTGCACCCTGGATATGATTTGGACGGAGTACGAAGCTTTT
TTGAAACAAGAGCCTTTGTTGCCCTGTCGTTATTCCCGGCCTGTGTTGCA
CAAAGGGTTGCTGAACGTGTTGGCATCGGGATTGGTGACTTTATGCCACC
GAATACCGCCCGGTGGGAAAACGTATCTGGAGCATGCGGTGCATGCGCCG
GGAAAGGATTTCGGTTCCTTGGATTCAGTGGATCTCGGCACAGTACCATT
GTGCATCGCATTTTATCCGCAAGATCTGCACGATTTCCTGGTGGCCCATG
AGCATTCCTTGCCTGCCCTCCTGACACGGTGGGGGAGCAGCTGGACCGAG
TAA

Coding sequence (CDS) from alignment at CM002457.1:106469..108621+

>rna1230 ID=rna1230|Name=rna1230|organism=Nannochloropsis gaditana|type=CDS|length=6792bp|location=Sequence derived from alignment at CM002457.1:106469..108621+ (Nannochloropsis gaditana)
ATGCTCTTCGCGATGAATGAAGGTAAGGAAAACAGGCACAACGCTACCGT
ACCACCAGTTGTTCGTGATCATATCGTATACCTAGTAATGGGGTCTTCTG
CTGCATCCTCACCTGAGCGGCGGAAACGCCCACGTTCTGGAGGCGATGCC
AGCCtgtgcccttcttccccgacgcCATCAGCCCCCGACTTGGACAGCCT
GGAGGACCTCCGAGGCACCCCCGCCCTGATGAGCGTGGTGTCAGAGGCGC
AGGCCCTATTTAAACGGCGTCTTTCAGCAAGCtacatccctcctccttcc
cttccagccccgTTAGGGCTCGAGACACAGGCGGCTCAAATTTATGAGCT
GTTGGTCAAGGCCTTGGAGAATAAAATGCACGACCCCTTTCTCCTAGTGG
GCTCCCGCGGGACGGGAAAAAGTCTGTGCCTCGAACATGCCTTCGCGCGC
CTGCGGGAAAGGTACCGGGCCCGGCAAGTGGCTCGGCCGTTCCGGGTCGT
GTACGTGGACGGTTGGTTGGAGAGTACGGACGCGACGGCGATGGCGGAAA
TTGCGGCGCAGTTGGAGATGAGCAAAGCCCTGGACACGTCCAAGAAGAAA
TTTACAGGGGGTAGCGCGGCAGGTGGTCAAGGGGGTCTGGGCTGTGGGGC
CAACCAACATTTGCAGTTCATTGTGGAGGCGATGCGGCGTGGCACCAGCG
AGGAGACGCCCTTGGTCTTCGTGATCGACCACATCGAAGCATTTGCCGGA
CAGGGTGgccggggtggtggtggcgggggagggaagcagttGTTACTCTA
CTCTTTGATGGATTTGCAGCACAGGGAGGACCTGAGttttgtggtggtgg
gggtctCAAACCAgCTTGACGTCCTGGATCGACTGGAAAAACGCATCCGT
TCCCGCATTTCCAACAAGCAtatcttctttcccctcgcccactccCTAGA
CCGggtcatcctccccatcctcgcgCAAGCCCTCTCCTTAgacgctccct
ccgcctcttccccggcCGCCCCCACGTCCACCCTGCTCTTCGAGGCACGA
CGTCGGTACGCCCATGCATTTAAGCAGGCCTGGgctaccctccttccatc
cctgcATGGCCTACTGGAATGGCCGCAGAAATTGGGGCGTCCGTTACGCT
GGTTCACCACCTTAACCTTCCGGGCCGTTTCTCATCTCCAGGGCAGCGAG
GCCCCTTTCCTGACCGTCGCCCATTTCAAGGAGGCATTGCATGCTCAATC
TGCACACGCGACGGCAAATTGCAAGGCGAGCTTTTCCAACTTGGCGAATT
TAGAACTCTTGGTGGTGACGGCCATGAAGCGCCTGGTGGACCGGGGCGAA
GAGCGGTGCACCCTGGATATGATTTGGACGGAGTACGAAGCTTTTTTGAA
ACAAGAGCCTTTGTTGCCCTGTCGTTATTCCCGGCCTGTGTTGCACAAAG
GGTTGCTGAACGTGTTGGCATCGGGATTGGTGACTTTATGCCACCGAATA
CCGCCCGGTGGGAAAACGTATCTGGAGCATGCGGTGCATGCGCCGGGAAA
GGATTTCGGTTCCTTGGATTCAGTGGATCTCGGCACAGTACCATTGTGCA
TCGCATTTTATCCGCAAGATCTGCACGATTTCCTGGTGGCCCATGAGCAT
TCCTTGCCTGCCCTCCTGACACGGTGGGGGAGCAGCTGGACCGAGTAAAT
GCTCTTCGCGATGAATGAAGGTAAGGAAAACAGGCACAACGCTACCGTAC
CACCAGTTGTTCGTGATCATATCGTATACCTAGTAATGGGGTCTTCTGCT
GCATCCTCACCTGAGCGGCGGAAACGCCCACGTTCTGGAGGCGATGCCAG
CCtgtgcccttcttccccgacgcCATCAGCCCCCGACTTGGACAGCCTGG
AGGACCTCCGAGGCACCCCCGCCCTGATGAGCGTGGTGTCAGAGGCGCAG
GCCCTATTTAAACGGCGTCTTTCAGCAAGCtacatccctcctccttccct
tccagccccgTTAGGGCTCGAGACACAGGCGGCTCAAATTTATGAGCTGT
TGGTCAAGGCCTTGGAGAATAAAATGCACGACCCCTTTCTCCTAGTGGGC
TCCCGCGGGACGGGAAAAAGTCTGTGCCTCGAACATGCCTTCGCGCGCCT
GCGGGAAAGGTACCGGGCCCGGCAAGTGGCTCGGCCGTTCCGGGTCGTGT
ACGTGGACGGTTGGTTGGAGAGTACGGACGCGACGGCGATGGCGGAAATT
GCGGCGCAGTTGGAGATGAGCAAAGCCCTGGACACGTCCAAGAAGAAATT
TACAGGGGGTAGCGCGGCAGGTGGTCAAGGGGGTCTGGGCTGTGGGGCCA
ACCAACATTTGCAGTTCATTGTGGAGGCGATGCGGCGTGGCACCAGCGAG
GAGACGCCCTTGGTCTTCGTGATCGACCACATCGAAGCATTTGCCGGACA
GGGTGgccggggtggtggtggcgggggagggaagcagttGTTACTCTACT
CTTTGATGGATTTGCAGCACAGGGAGGACCTGAGttttgtggtggtgggg
gtctCAAACCAgCTTGACGTCCTGGATCGACTGGAAAAACGCATCCGTTC
CCGCATTTCCAACAAGCAtatcttctttcccctcgcccactccCTAGACC
GggtcatcctccccatcctcgcgCAAGCCCTCTCCTTAgacgctccctcc
gcctcttccccggcCGCCCCCACGTCCACCCTGCTCTTCGAGGCACGACG
TCGGTACGCCCATGCATTTAAGCAGGCCTGGgctaccctccttccatccc
tgcATGGCCTACTGGAATGGCCGCAGAAATTGGGGCGTCCGTTACGCTGG
TTCACCACCTTAACCTTCCGGGCCGTTTCTCATCTCCAGGGCAGCGAGGC
CCCTTTCCTGACCGTCGCCCATTTCAAGGAGGCATTGCATGCTCAATCTG
CACACGCGACGGCAAATTGCAAGGCGAGCTTTTCCAACTTGGCGAATTTA
GAACTCTTGGTGGTGACGGCCATGAAGCGCCTGGTGGACCGGGGCGAAGA
GCGGTGCACCCTGGATATGATTTGGACGGAGTACGAAGCTTTTTTGAAAC
AAGAGCCTTTGTTGCCCTGTCGTTATTCCCGGCCTGTGTTGCACAAAGGG
TTGCTGAACGTGTTGGCATCGGGATTGGTGACTTTATGCCACCGAATACC
GCCCGGTGGGAAAACGTATCTGGAGCATGCGGTGCATGCGCCGGGAAAGG
ATTTCGGTTCCTTGGATTCAGTGGATCTCGGCACAGTACCATTGTGCATC
GCATTTTATCCGCAAGATCTGCACGATTTCCTGGTGGCCCATGAGCATTC
CTTGCCTGCCCTCCTGACACGGTGGGGGAGCAGCTGGACCGAGTAAATGC
TCTTCGCGATGAATGAAGGTAAGGAAAACAGGCACAACGCTACCGTACCA
CCAGTTGTTCGTGATCATATCGTATACCTAGTAATGGGGTCTTCTGCTGC
ATCCTCACCTGAGCGGCGGAAACGCCCACGTTCTGGAGGCGATGCCAGCC
tgtgcccttcttccccgacgcCATCAGCCCCCGACTTGGACAGCCTGGAG
GACCTCCGAGGCACCCCCGCCCTGATGAGCGTGGTGTCAGAGGCGCAGGC
CCTATTTAAACGGCGTCTTTCAGCAAGCtacatccctcctccttcccttc
cagccccgTTAGGGCTCGAGACACAGGCGGCTCAAATTTATGAGCTGTTG
GTCAAGGCCTTGGAGAATAAAATGCACGACCCCTTTCTCCTAGTGGGCTC
CCGCGGGACGGGAAAAAGTCTGTGCCTCGAACATGCCTTCGCGCGCCTGC
GGGAAAGGTACCGGGCCCGGCAAGTGGCTCGGCCGTTCCGGGTCGTGTAC
GTGGACGGTTGGTTGGAGAGTACGGACGCGACGGCGATGGCGGAAATTGC
GGCGCAGTTGGAGATGAGCAAAGCCCTGGACACGTCCAAGAAGAAATTTA
CAGGGGGTAGCGCGGCAGGTGGTCAAGGGGGTCTGGGCTGTGGGGCCAAC
CAACATTTGCAGTTCATTGTGGAGGCGATGCGGCGTGGCACCAGCGAGGA
GACGCCCTTGGTCTTCGTGATCGACCACATCGAAGCATTTGCCGGACAGG
GTGgccggggtggtggtggcgggggagggaagcagttGTTACTCTACTCT
TTGATGGATTTGCAGCACAGGGAGGACCTGAGttttgtggtggtgggggt
ctCAAACCAgCTTGACGTCCTGGATCGACTGGAAAAACGCATCCGTTCCC
GCATTTCCAACAAGCAtatcttctttcccctcgcccactccCTAGACCGg
gtcatcctccccatcctcgcgCAAGCCCTCTCCTTAgacgctccctccgc
ctcttccccggcCGCCCCCACGTCCACCCTGCTCTTCGAGGCACGACGTC
GGTACGCCCATGCATTTAAGCAGGCCTGGgctaccctccttccatccctg
cATGGCCTACTGGAATGGCCGCAGAAATTGGGGCGTCCGTTACGCTGGTT
CACCACCTTAACCTTCCGGGCCGTTTCTCATCTCCAGGGCAGCGAGGCCC
CTTTCCTGACCGTCGCCCATTTCAAGGAGGCATTGCATGCTCAATCTGCA
CACGCGACGGCAAATTGCAAGGCGAGCTTTTCCAACTTGGCGAATTTAGA
ACTCTTGGTGGTGACGGCCATGAAGCGCCTGGTGGACCGGGGCGAAGAGC
GGTGCACCCTGGATATGATTTGGACGGAGTACGAAGCTTTTTTGAAACAA
GAGCCTTTGTTGCCCTGTCGTTATTCCCGGCCTGTGTTGCACAAAGGGTT
GCTGAACGTGTTGGCATCGGGATTGGTGACTTTATGCCACCGAATACCGC
CCGGTGGGAAAACGTATCTGGAGCATGCGGTGCATGCGCCGGGAAAGGAT
TTCGGTTCCTTGGATTCAGTGGATCTCGGCACAGTACCATTGTGCATCGC
ATTTTATCCGCAAGATCTGCACGATTTCCTGGTGGCCCATGAGCATTCCT
TGCCTGCCCTCCTGACACGGTGGGGGAGCAGCTGGACCGAGTAAATGCTC
TTCGCGATGAATGAAGGTAAGGAAAACAGGCACAACGCTACCGTACCACC
AGTTGTTCGTGATCATATCGTATACCTAGTAATGGGGTCTTCTGCTGCAT
CCTCACCTGAGCGGCGGAAACGCCCACGTTCTGGAGGCGATGCCAGCCtg
tgcccttcttccccgacgcCATCAGCCCCCGACTTGGACAGCCTGGAGGA
CCTCCGAGGCACCCCCGCCCTGATGAGCGTGGTGTCAGAGGCGCAGGCCC
TATTTAAACGGCGTCTTTCAGCAAGCtacatccctcctccttcccttcca
gccccgTTAGGGCTCGAGACACAGGCGGCTCAAATTTATGAGCTGTTGGT
CAAGGCCTTGGAGAATAAAATGCACGACCCCTTTCTCCTAGTGGGCTCCC
GCGGGACGGGAAAAAGTCTGTGCCTCGAACATGCCTTCGCGCGCCTGCGG
GAAAGGTACCGGGCCCGGCAAGTGGCTCGGCCGTTCCGGGTCGTGTACGT
GGACGGTTGGTTGGAGAGTACGGACGCGACGGCGATGGCGGAAATTGCGG
CGCAGTTGGAGATGAGCAAAGCCCTGGACACGTCCAAGAAGAAATTTACA
GGGGGTAGCGCGGCAGGTGGTCAAGGGGGTCTGGGCTGTGGGGCCAACCA
ACATTTGCAGTTCATTGTGGAGGCGATGCGGCGTGGCACCAGCGAGGAGA
CGCCCTTGGTCTTCGTGATCGACCACATCGAAGCATTTGCCGGACAGGGT
GgccggggtggtggtggcgggggagggaagcagttGTTACTCTACTCTTT
GATGGATTTGCAGCACAGGGAGGACCTGAGttttgtggtggtgggggtct
CAAACCAgCTTGACGTCCTGGATCGACTGGAAAAACGCATCCGTTCCCGC
ATTTCCAACAAGCAtatcttctttcccctcgcccactccCTAGACCGggt
catcctccccatcctcgcgCAAGCCCTCTCCTTAgacgctccctccgcct
cttccccggcCGCCCCCACGTCCACCCTGCTCTTCGAGGCACGACGTCGG
TACGCCCATGCATTTAAGCAGGCCTGGgctaccctccttccatccctgcA
TGGCCTACTGGAATGGCCGCAGAAATTGGGGCGTCCGTTACGCTGGTTCA
CCACCTTAACCTTCCGGGCCGTTTCTCATCTCCAGGGCAGCGAGGCCCCT
TTCCTGACCGTCGCCCATTTCAAGGAGGCATTGCATGCTCAATCTGCACA
CGCGACGGCAAATTGCAAGGCGAGCTTTTCCAACTTGGCGAATTTAGAAC
TCTTGGTGGTGACGGCCATGAAGCGCCTGGTGGACCGGGGCGAAGAGCGG
TGCACCCTGGATATGATTTGGACGGAGTACGAAGCTTTTTTGAAACAAGA
GCCTTTGTTGCCCTGTCGTTATTCCCGGCCTGTGTTGCACAAAGGGTTGC
TGAACGTGTTGGCATCGGGATTGGTGACTTTATGCCACCGAATACCGCCC
GGTGGGAAAACGTATCTGGAGCATGCGGTGCATGCGCCGGGAAAGGATTT
CGGTTCCTTGGATTCAGTGGATCTCGGCACAGTACCATTGTGCATCGCAT
TTTATCCGCAAGATCTGCACGATTTCCTGGTGGCCCATGAGCATTCCTTG
CCTGCCCTCCTGACACGGTGGGGGAGCAGCTGGACCGAGTAA

Synonyms

Publications