EWM29439.1, cds1229 (CDS) Nannochloropsis gaditana

Overview
NameEWM29439.1
Unique Namecds1229
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:106469..106490 +
Alignment locationCM002457.1:106624..106740 +
Alignment locationCM002457.1:106893..107616 +
Alignment locationCM002457.1:107787..108621 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29439.1
Productorigin recognition complex subunit 4
Orig transcript idgnl|cribi|Naga_100083g6.6766.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:106469..106490 +
CM002457.1supercontigCM002457.1:106624..106740 +
CM002457.1supercontigCM002457.1:106893..107616 +
CM002457.1supercontigCM002457.1:107787..108621 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|585111975|gb|EWM29439.1| (origin recognition complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 1155.2 bits (2987), Expect = 0.000e+0
Identity = 565/565 (100.00%), Postives = 565/565 (100.00%), Query Frame = 0
Query:    1 MLFAMNEGKENRHNATVPPVVRDHIVYLVMGSSAASSPERRKRPRSGGDASLCPSSPTPSAPDLDSLEDLRGTPALMSVVSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGLLNVLASGLVTLCHRIPPGGKTYLEHAVHAPGKDFGSLDSVDLGTVPLCIAFYPQDLHDFLVAHEHSLPALLTRWGSSWTE 565
            MLFAMNEGKENRHNATVPPVVRDHIVYLVMGSSAASSPERRKRPRSGGDASLCPSSPTPSAPDLDSLEDLRGTPALMSVVSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGLLNVLASGLVTLCHRIPPGGKTYLEHAVHAPGKDFGSLDSVDLGTVPLCIAFYPQDLHDFLVAHEHSLPALLTRWGSSWTE
Sbjct:    1 MLFAMNEGKENRHNATVPPVVRDHIVYLVMGSSAASSPERRKRPRSGGDASLCPSSPTPSAPDLDSLEDLRGTPALMSVVSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGLLNVLASGLVTLCHRIPPGGKTYLEHAVHAPGKDFGSLDSVDLGTVPLCIAFYPQDLHDFLVAHEHSLPALLTRWGSSWTE 565          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|671691087|emb|CDS05825.1| (hypothetical protein LRAMOSA08353 [Lichtheimia ramosa])

HSP 1 Score: 136.732 bits (343), Expect = 6.084e-31
Identity = 131/504 (25.99%), Postives = 219/504 (43.45%), Query Frame = 0
Query:   22 RDHIVYLVMGSSAASSPERR-KRPRSGGDASLCPSSPTPSAPDLDSLED---------LRGTPALMSVVSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIF-FPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLL--PSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEERCTLDMIWTEYEAFLKQEPLL-----PCRYSRPVLHKGLLNVLASGLVTLCHRIPPGGKTY 507
            R H+    + S  + SP+R  KR RS G +    S+   S+  L+ L+D          R    L   V+ A++    RLS    PP        L+ Q A +Y+LL + +     +  LL+G+RG GK++ +  A   L ++Y     A  F V+ ++G  E+TD  A++EIA QL + +     ++     S A           +   +++  ++ G     P++F++D  + FA Q          KQ LLY+L D          V+G++ +LD L  LEKR++SR S++ I+ FP +   +   + +    L L        A             Y   F  A   L   P+++ +L     L + +R F  L F  VS L   E P+L V  F+E   AQ + A          ++ LEL+++ +MK+L+++       +M++ EY+ F+ +  +         Y RPV  K   N+    +V     I    K Y
Sbjct:    7 RKHLDKFYISSPNSKSPQRTMKRRRSLGASPDAVSTKRQSSSVLNVLDDDPFAEPENTTRNESDLQHQVACARSRLLERLSEKSSPPQMY----CLQDQYATLYDLLDQTVSKGESNSCLLIGNRGVGKTMLVRRALEDLDKQYNRTSEASNFCVIRLNGQTETTDRLALSEIARQLFLQQKQPQQQQSRQFASFA-----------ESFDYLLSLIKAGDKSTLPIIFILDEFDLFAQQ---------PKQALLYNLFDAAQSAQNPMAVIGLTCRLDALSLLEKRVKSRFSHRQIYVFPPSTFGE--FIELAKSQLRLQVVLGDHAAYSV----------YVEKFNAALEDLFQNPTMNTILRRIFDLTKDIRSFYKLCFEPVSKL-SQENPYLRVEDFQETSIAQRSDAKTEI---LKGVSMLELVLIVSMKKLLEKDITTFNFEMVYDEYKDFMNRTQVSGGGFGVKLYKRPVALKAFENLQGFEIVCPVEDIAKCPKEY 470          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|1004663514|ref|XP_015746984.1| (PREDICTED: origin recognition complex subunit 4 isoform X3 [Python bivittatus])

HSP 1 Score: 124.405 bits (311), Expect = 2.149e-27
Identity = 114/414 (27.54%), Postives = 191/414 (46.14%), Query Frame = 0
Query:   80 VSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEET-PLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLD-RVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSL------HGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSN-LANLELLVVTAMKRLVDRGE-ERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHK 483
            +SE Q L + R    ++ P       GLE Q   + ELL     N   +  L++G RG+GK+L + H   +L E    +QV      V+++G L+++D  A+ EI  QL +   +              G    G  A ++L F++EA++RG  + + P++F++D  + F              Q LLY+L D+         V+G++ +LD+L+ LEKR++SR S++ I   L +S D +  L I  + LSL       P  P              +F Q W   + SL        +L+      + LR    L   A +++  S  P++ V+ F EA    S     + KA+  + L+ LEL ++ AMK L D  E E     M++ EY+ F++++      + +PV+ K
Sbjct:   17 ISEVQKLLRERFC--HLNPNG--KLFGLEHQYKHLLELLKHTAINGESNSVLIIGPRGSGKTLLICHVLKKLLE---IKQVRDNVLQVHLNGLLQTSDRIALKEITRQLNLENVV--------------GDKVFGSFA-ENLAFLLEALKRGDRDHSCPVLFILDEFDLFVHHKN---------QTLLYNLFDVSQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQI--HLMNSFDFKTYLNICKEQLSL------PPEFPEK------------SFIQKWNKNIQSLLEDLKVQDVLQNQFHYSKDLRCLFMLLMLASNNITASH-PYIRVSDFLEA----SRLCRMDTKANIVHGLSVLELCLIIAMKHLNDIYEGEPFNFQMVYHEYQKFVQRKAHTVYNFEKPVVMK 374          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|602631585|ref|XP_007422692.1| (PREDICTED: origin recognition complex subunit 4 isoform X1 [Python bivittatus] >gi|602631587|ref|XP_007422693.1| PREDICTED: origin recognition complex subunit 4 isoform X1 [Python bivittatus] >gi|602631589|ref|XP_007422694.1| PREDICTED: origin recognition complex subunit 4 isoform X1 [Python bivittatus])

HSP 1 Score: 124.405 bits (311), Expect = 4.173e-27
Identity = 114/416 (27.40%), Postives = 191/416 (45.91%), Query Frame = 0
Query:   80 VSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEET-PLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLD-RVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSL------HGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSN-LANLELLVVTAMKRLVDRGE-ERCTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGL 485
            +SE Q L + R    ++ P       GLE Q   + ELL     N   +  L++G RG+GK+L + H   +L E    +QV      V+++G L+++D  A+ EI  QL +   +              G    G  A ++L F++EA++RG  + + P++F++D  + F              Q LLY+L D+         V+G++ +LD+L+ LEKR++SR S++ I   L +S D +  L I  + LSL       P  P              +F Q W   + SL        +L+      + LR    L   A +++  S  P++ V+ F EA    S     + KA+  + L+ LEL ++ AMK L D  E E     M++ EY+ F++++      + +PV+ K  
Sbjct:   17 ISEVQKLLRERFC--HLNPNG--KLFGLEHQYKHLLELLKHTAINGESNSVLIIGPRGSGKTLLICHVLKKLLE---IKQVRDNVLQVHLNGLLQTSDRIALKEITRQLNLENVV--------------GDKVFGSFA-ENLAFLLEALKRGDRDHSCPVLFILDEFDLFVHHKN---------QTLLYNLFDVSQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQI--HLMNSFDFKTYLNICKEQLSL------PPEFPEK------------SFIQKWNKNIQSLLEDLKVQDVLQNQFHYSKDLRCLFMLLMLASNNITASH-PYIRVSDFLEA----SRLCRMDTKANIVHGLSVLELCLIIAMKHLNDIYEGEPFNFQMVYHEYQKFVQRKAHTVYNFEKPVVMKAF 376          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|1026265188|gb|OAC98350.1| (hypothetical protein MUCCIDRAFT_86112 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 123.635 bits (309), Expect = 8.747e-27
Identity = 101/393 (25.70%), Postives = 182/393 (46.31%), Query Frame = 0
Query:   80 VSEAQALFKRRLSASYIPPPSLPAPL-GLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIF-FPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLL--PSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEERCTLDMIWTEYEAFLKQ 468
            + +AQ+L   RL+        LP  L G++ Q   ++ +L + +     +  L+VG+RGTGK+  +      L+      ++   F +V ++G  E+ D  A+ EIA QL +++  D   + FT  + +               +++  ++ G     P+VFV+D  + FA            KQ LLY+L D          V+G++ +LD LD LEKR++SR S++ I+ FP ++           + L +             TL+     R + AF      L   P+++G+L     + + +R F  + F AV  L G +APFL++  F E+   Q A +          +A LEL+++ +MK+L+++        M++ EY+ F+ +
Sbjct:   34 IRKAQSLLLARLNG-----IELPHQLHGIDKQYNTLHRILKQTVTAGESNSCLIVGNRGTGKTALVRTVLRDLQ------KLENEFYIVKLNGLTETNDRLALNEIARQL-VTEQQDQPDRTFTSFADS-------------FDYLLSLLKSGDKSSLPVVFVLDEFDLFAQHP---------KQALLYNLFDAAQSAQNPMAVIGLTCRLDTLDLLEKRVKSRFSHRQIYLFPSSN---------FGEFLDI----------AKGTLMLPEEYRGSDAFNMDLEELFQNPTVNGILRRIFDISKDIRMFQKICFPAVCKLNG-QAPFLSIEEFTESSLVQRADSKTEL---LKGIALLELVLIVSMKKLLEKDVTTFNFQMVYDEYKDFMNR 369          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|1195704123|ref|XP_021038339.1| (origin recognition complex subunit 4 isoform X2 [Mus caroli])

HSP 1 Score: 122.479 bits (306), Expect = 1.104e-26
Identity = 108/412 (26.21%), Postives = 187/412 (45.39%), Query Frame = 0
Query:   80 VSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGT-SEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEER-CTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGLLNVL 489
            +S+ Q + + R    + P  +L    G++ Q   + ELL +       +  L+VG RG+GK+  L HA     E   +  V +    V+++G L++ +  A+ EI  QL +   +              G    G  A ++L F++EA+++G  +   P++F++D  + FA Q           Q LLY+L D+         V+G++ +LD+L+ LEKR++SR S++ I   L +S D        Q L +     S PA     +  E      H   +    L      +L+    + + L+    L   A++ +  S  PF+T A   EA H  S  + AN       L+ LE+ ++ AMK L D  EE      M++ E++ F++++      + +PV+ K LL  L
Sbjct:   15 LSQVQRILRERF-CHHSPHSNL---FGVQVQYKHLIELLKRTAIYGESNSVLIVGPRGSGKTTLLNHALKEFMEIEVSENVLQ----VHLNGLLQTNEKIALKEITRQLNLDNVV--------------GDKVFGSFA-ENLSFLLEALQKGDRTSSCPVIFILDEFDIFAHQKN---------QTLLYNLFDISQSAQTPVAVIGLTCRLDILELLEKRVKSRFSHRQI--HLMNSFD------FPQYLKIFKEQLSLPAEFPDKVFAERWNENVHCLSEDSTVL-----EVLQKHFSVNKNLQSLHMLLMLALNRVTVSH-PFMTSADLMEAQHMCSLDSKANI---VHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFIQRKAHSVYNFEKPVVMKILLTAL 377          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|880878172|ref|XP_012968057.1| (origin recognition complex subunit 4 isoform X1 [Mesocricetus auratus])

HSP 1 Score: 123.635 bits (309), Expect = 1.185e-26
Identity = 102/383 (26.63%), Postives = 179/383 (46.74%), Query Frame = 0
Query:  105 LGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGT-SEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEER-CTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGL 485
             G+E Q   + ELL +   N   +  L+VG RG+GK++ +  A   L+E    R+V+     V+++G ++  D  A+ EI  QL +   +              G    G  A ++L F++EA+++G  +   P++F++D  + FA Q           Q LLY+L D+         V+G++ +LD+L+ LEKR++SR S++ I   L +S D        Q + +     S P    + +  E     A +  +  +T+   L  L      + + LR   TL   A++ +  S  PF+T A   EA H  S  + A+       L+ LE+ ++ AMK L D  EE      M++ E++ F++++      + +PV+ K  
Sbjct:   86 FGVEVQYKHLIELLKRTAINGESNSVLIVGPRGSGKTMLINRA---LKELMEIREVSENVLQVHLNGLMQINDKIALKEITRQLNLENVV--------------GDKVFGSFA-ENLSFLLEALKKGDRASSCPVIFILDEFDLFAHQKN---------QTLLYNLFDISQSAQTPVAVIGLTCRLDILELLEKRVKSRFSHRQIH--LMNSFD------FPQYMKIFKEQLSLPEEFPNKVFAERWNENAQSLSED-STVREVLQKLF----NVNKSLRSLHTLLMLALTRVTVSH-PFMTSADLMEAQHLCSLDSKASI---IHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFIQRKAHSVYNFEKPVVMKAF 424          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|880878176|ref|XP_012968058.1| (origin recognition complex subunit 4 isoform X2 [Mesocricetus auratus] >gi|880878180|ref|XP_012968059.1| origin recognition complex subunit 4 isoform X2 [Mesocricetus auratus] >gi|1196036281|ref|XP_021082205.1| origin recognition complex subunit 4 isoform X2 [Mesocricetus auratus])

HSP 1 Score: 122.865 bits (307), Expect = 1.374e-26
Identity = 102/383 (26.63%), Postives = 179/383 (46.74%), Query Frame = 0
Query:  105 LGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGT-SEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEER-CTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGL 485
             G+E Q   + ELL +   N   +  L+VG RG+GK++ +  A   L+E    R+V+     V+++G ++  D  A+ EI  QL +   +              G    G  A ++L F++EA+++G  +   P++F++D  + FA Q           Q LLY+L D+         V+G++ +LD+L+ LEKR++SR S++ I   L +S D        Q + +     S P    + +  E     A +  +  +T+   L  L      + + LR   TL   A++ +  S  PF+T A   EA H  S  + A+       L+ LE+ ++ AMK L D  EE      M++ E++ F++++      + +PV+ K  
Sbjct:   38 FGVEVQYKHLIELLKRTAINGESNSVLIVGPRGSGKTMLINRA---LKELMEIREVSENVLQVHLNGLMQINDKIALKEITRQLNLENVV--------------GDKVFGSFA-ENLSFLLEALKKGDRASSCPVIFILDEFDLFAHQKN---------QTLLYNLFDISQSAQTPVAVIGLTCRLDILELLEKRVKSRFSHRQI--HLMNSFD------FPQYMKIFKEQLSLPEEFPNKVFAERWNENAQSLSED-STVREVLQKLF----NVNKSLRSLHTLLMLALTRVTVSH-PFMTSADLMEAQHLCSLDSKASI---IHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFIQRKAHSVYNFEKPVVMKAF 376          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|625212443|ref|XP_007646936.1| (PREDICTED: origin recognition complex subunit 4 isoform X2 [Cricetulus griseus])

HSP 1 Score: 122.865 bits (307), Expect = 1.911e-26
Identity = 105/408 (25.74%), Postives = 188/408 (46.08%), Query Frame = 0
Query:   80 VSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGT-SEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEER-CTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGL 485
            +S+ Q + + R      P  +L    G++ Q   + ELL +   N   +  L+VG RG+GK++ + HA   L+E    R+V+     V+++G ++  D  A+ EI  QL +   +              G    G  A ++L F++EA+++G  +   P++F++D  + FA Q           Q LLY+L D+         V+G++ +LD+L+ LEKR++SR S++ I   L +S D        Q + +     S P    + +  E       +  +  +T+   L  L      + + LR    L   A++ +  S  PF+T A   EA H  S  + A+       L+ LE+ ++ AMK L D  EE      M++ E++ F++++      + +PV+ K  
Sbjct:   34 LSQVQRILRERFCHQS-PHSNL---FGVQVQYKHLIELLKRTAINGESNSVLIVGPRGSGKTMLINHA---LKELMEIREVSENVLQVHLNGLMQINDKIALTEITRQLNLENVV--------------GDKVFGSFA-ENLSFLLEALKKGNRANSCPVIFILDEFDLFAHQKN---------QTLLYNLFDISQSAQTPVAVIGLTCRLDILELLEKRVKSRFSHRQI--HLMNSFD------FPQYMKIFKEQLSLPEEFPNKVFAERWNENTQSLSED-STVREVLQKLF----NVNKSLRSLHMLLMLALNRVTVSH-PFMTSADLMEAQHLCSLDSKASI---IHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFIQRKAHSVYNFEKPVVMKAF 393          
BLAST of EWM29439.1 vs. NCBI_GenBank
Match: gi|472364051|ref|XP_004401591.1| (PREDICTED: origin recognition complex subunit 4 [Odobenus rosmarus divergens])

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-26
Identity = 106/408 (25.98%), Postives = 186/408 (45.59%), Query Frame = 0
Query:   80 VSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGT-SEETPLVFVIDHIEAFAGQGGRGGGGGGGKQLLLYSLMDLQHREDLSFVVVGVSNQLDVLDRLEKRIRSRISNKHIFFPLAHSLDRVILPILAQALSLDAPSASSPAAPTSTLLFEARRRYAHAFKQAWATLLPSLHGLLEWPQKLGRPLRWFTTLTFRAVSHLQGSEAPFLTVAHFKEALHAQSAHATANCKASFSNLANLELLVVTAMKRLVDRGEER-CTLDMIWTEYEAFLKQEPLLPCRYSRPVLHKGL 485
            +S+ Q + + R      P  +L    G++ Q   + ELL +   +   +  L++G RG+GK++ + HA   L+E   A +V+     V+++G L+  D  A+ EI  QL +   +              G    G  A ++L F++EA+++G  S   P++FV+D  + FA             Q LLY+L D+         V+G++ +LD+L+ LEKR++SR S++ I     H ++    P   Q L +     S PA     +  E          +       S+  +L+    + + LR    L   A++ +  S  PF+T A   EA H  S  + AN       L+ LE+ ++ AMK L D  EE      M++ E++ F++++      + +PV+ K  
Sbjct:   17 LSQVQRILRERFCHQS-PHSNL---FGVQVQYKHLIELLKRTAIHGESNSVLIIGPRGSGKTMLINHA---LKELMEAEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVV--------------GDKVFGSFA-ENLSFLLEALKKGDRSSSCPVIFVLDEFDLFAHHKN---------QTLLYNLFDISQSAQTPLAVIGLTCRLDILELLEKRVKSRFSHRQI-----HLMNSFGFP---QYLKIFKEQLSLPAEFPDKIFTEKWNENVQCLTED-----RSVREVLQKHFNVSKNLRSLHMLLMLALNRVTTSH-PFMTAADVMEANHLCSMDSKANI---VHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRKAHSVYNFEKPVVMKAF 376          
The following BLAST results are available for this feature:
BLAST of EWM29439.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111975|gb|EWM29439.1|0.000e+0100.00origin recognition complex subunit 4 [Nannochlorop... [more]
gi|671691087|emb|CDS05825.1|6.084e-3125.99hypothetical protein LRAMOSA08353 [Lichtheimia ram... [more]
gi|1004663514|ref|XP_015746984.1|2.149e-2727.54PREDICTED: origin recognition complex subunit 4 is... [more]
gi|602631585|ref|XP_007422692.1|4.173e-2727.40PREDICTED: origin recognition complex subunit 4 is... [more]
gi|1026265188|gb|OAC98350.1|8.747e-2725.70hypothetical protein MUCCIDRAFT_86112 [Mucor circi... [more]
gi|1195704123|ref|XP_021038339.1|1.104e-2626.21origin recognition complex subunit 4 isoform X2 [M... [more]
gi|880878172|ref|XP_012968057.1|1.185e-2626.63origin recognition complex subunit 4 isoform X1 [M... [more]
gi|880878176|ref|XP_012968058.1|1.374e-2626.63origin recognition complex subunit 4 isoform X2 [M... [more]
gi|625212443|ref|XP_007646936.1|1.911e-2625.74PREDICTED: origin recognition complex subunit 4 is... [more]
gi|472364051|ref|XP_004401591.1|1.954e-2625.98PREDICTED: origin recognition complex subunit 4 [O... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1230rna1230Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications