rna1229, rna1229 (mRNA) Nannochloropsis gaditana

Overview
Namerna1229
Unique Namerna1229
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length279
Alignment locationCM002457.1:104769..106177 -

Link to JBrowse

Properties
Property NameValue
Productsmall ubiquitin-like modifier
Orig transcript idgnl|cribi|Naga_100083g7.6778.mrna
Orig protein idgnl|cribi|Naga_100083g7.6778
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:104769..106177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g7gene1184Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1229rna1229-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29451.1cds1228Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1229 ID=rna1229|Name=rna1229|organism=Nannochloropsis gaditana|type=mRNA|length=279bp
ATGGAAGGCATGGCCCTTCACCGGAGTCTAGGACCAGGGAGGAGGATGGG
GAGGGAGGAAGCGAGGGAGGAAGCGCCACGGAATGGAGGGAAAATAGGGA
GGCAACGTTGGAGTCACGGGACAGGGGAAGAGTCCATCCGGTGGGGAGAC
TTGCAGGGGTATGTGAAGGCGAGAGGCAGAGCGAGAGTATGTGCGAGGGA
GAGAGAATGGAGGAAAGAGAGATTGCCCGTGTGGAAAGTAGAGAGAGAAA
GAAAGAGAGAGAGAGCAAGAGGGAGATAG
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protein sequence of rna1229

>rna1229-protein ID=rna1229-protein|Name=rna1229|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MKKTNPLYHSSSSTLANQARTMATVKTDTTATEPKSESITLRVKDQTGEE
TMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELE
DEDQIDVMLEQLGGC
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mRNA from alignment at CM002457.1:104769..106177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1229 ID=rna1229|Name=rna1229|organism=Nannochloropsis gaditana|type=mRNA|length=1409bp|location=Sequence derived from alignment at CM002457.1:104769..106177- (Nannochloropsis gaditana)
ATGAAAAAGACAAACGTAAGGCTGCGCCGGTTGGTTCTAATTCTCTCCTC
GTCCTCCCTCCCCTCGCTCTCTGTGTCGAACACTCCATTCAAAAACGCCA
AAAGCATGCGCCTGACCATCCATGAACAACGGCCCGCTATTGCGGCATAA
TGTGTACCGACGTTTAGAAATTTTTCGGTGAATTCGCATGCCATTGGTTG
AAAAATGAGACGCTCGTATAAGTCCGGCCGCGGCTGGGAGGACGTTCTCC
CTTTTATTCCATCCCGCCATCGTTTCATGTGTTTTTTGGATTCAATTGCG
CGCGGAGTCAAGAGGATGGGGGCCATGATAGCCTCGATGCGTAATTTTGT
TGTGTAGCTTGATTACTTTACTGAGATGGCTTAATTGAGGGTATGTTTGG
CGCTTGTTGTGCGAGTCCGAGAGTCTTCGTTGCTTGATGGTGATAATCTG
CCCTACTTTGGTGTAACTGTCCTCCTTTTTCTCTCTGCACACTACAGGCA
CAAGAAGGACATCACTAGCCATTGTATCACTCCTCCAGTTCAACGCTCGC
AAATCAAGCTAGGACGATGGCAACTGTCAAGACTGATACCACTGCGACCG
AGCCCAAGAGCGAAAGTATCACCCTTCGAGTCAAGGATCAGACAGGGGAG
GAAACCATGTTTAAGGTGGGTGGGCCGTGATGCACTTCGATGAGAGGCCT
TCTGAAGTGATGCTCAGAGCAACGAACGATTTAAAAGGAATATCGAGTGT
GGACGGGGGTGGTGGTAATTGACCGCTAGTTAGGATCACATCATCAAAGG
TCCAGATCCATCTCTTTTCTTGCCCCGTCAAACCAGTCATATCATCTTCA
AACATCGCTAACCATCTAACCTCTGTGTTGGGCCCCATAGGTCAAGAAAA
CTACCAAGATGGAGAAGGTGTTTGCTTCCTACGCCGGGCGGAAGGGCGTG
AACGTGGATTCCTTGCGGTTTTTACTGGATGGACAGGTGAGGTTAGGTAT
GGCGCGTGTCAGGGCCGCGTGCACCGTGTGACACAAGATAATGTATAAAG
AGGCTTGTGGTACCGAGGCTCGCTTGGAGGGGCGAGGTGTGTGTAGCGCC
TGTCAGATCGATGAATCGAAGCTTAAGGGCAAAGGGGACGAGCATGACCA
GCCTTCGGCTCAGGGAGGGATTGTACCAAGGAGAAAGGACAGGCCTGTCT
GCTCATTTCTCGCACCCTGTGTTGTTCCACAGCGCATCGAGAAGCACCAG
ACGTCCGCTGAGCTAGAGCTGGAGGATGAAGATCAGGTGGGTGGAGGGGA
TGTTGAGGCGTGTTCTTGTGCTGGGAAAGGGGGGATCTGCAGTTTCTCAC
ATGCACCGGCCTTTGCTGCACAGATTGACGTCATGCTCGAGCAGCTGGGA
GGGTGCTAG
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Coding sequence (CDS) from alignment at CM002457.1:104769..106177-

>rna1229 ID=rna1229|Name=rna1229|organism=Nannochloropsis gaditana|type=CDS|length=1740bp|location=Sequence derived from alignment at CM002457.1:104769..106177- (Nannochloropsis gaditana)
ATTGACGTCATGCTCGAGCAGCTGGGAGGGTGCTAGCGCATCGAGAAGCA
CCAGACGTCCGCTGAGCTAGAGCTGGAGGATGAAGATCAGGTCAAGAAAA
CTACCAAGATGGAGAAGGTGTTTGCTTCCTACGCCGGGCGGAAGGGCGTG
AACGTGGATTCCTTGCGGTTTTTACTGGATGGACAGCCATTGTATCACTC
CTCCAGTTCAACGCTCGCAAATCAAGCTAGGACGATGGCAACTGTCAAGA
CTGATACCACTGCGACCGAGCCCAAGAGCGAAAGTATCACCCTTCGAGTC
AAGGATCAGACAGGGGAGGAAACCATGTTTAAGATGAAAAAGACAAACAT
TGACGTCATGCTCGAGCAGCTGGGAGGGTGCTAGCGCATCGAGAAGCACC
AGACGTCCGCTGAGCTAGAGCTGGAGGATGAAGATCAGGTCAAGAAAACT
ACCAAGATGGAGAAGGTGTTTGCTTCCTACGCCGGGCGGAAGGGCGTGAA
CGTGGATTCCTTGCGGTTTTTACTGGATGGACAGCCATTGTATCACTCCT
CCAGTTCAACGCTCGCAAATCAAGCTAGGACGATGGCAACTGTCAAGACT
GATACCACTGCGACCGAGCCCAAGAGCGAAAGTATCACCCTTCGAGTCAA
GGATCAGACAGGGGAGGAAACCATGTTTAAGATGAAAAAGACAAACATTG
ACGTCATGCTCGAGCAGCTGGGAGGGTGCTAGCGCATCGAGAAGCACCAG
ACGTCCGCTGAGCTAGAGCTGGAGGATGAAGATCAGGTCAAGAAAACTAC
CAAGATGGAGAAGGTGTTTGCTTCCTACGCCGGGCGGAAGGGCGTGAACG
TGGATTCCTTGCGGTTTTTACTGGATGGACAGCCATTGTATCACTCCTCC
AGTTCAACGCTCGCAAATCAAGCTAGGACGATGGCAACTGTCAAGACTGA
TACCACTGCGACCGAGCCCAAGAGCGAAAGTATCACCCTTCGAGTCAAGG
ATCAGACAGGGGAGGAAACCATGTTTAAGATGAAAAAGACAAACATTGAC
GTCATGCTCGAGCAGCTGGGAGGGTGCTAGCGCATCGAGAAGCACCAGAC
GTCCGCTGAGCTAGAGCTGGAGGATGAAGATCAGGTCAAGAAAACTACCA
AGATGGAGAAGGTGTTTGCTTCCTACGCCGGGCGGAAGGGCGTGAACGTG
GATTCCTTGCGGTTTTTACTGGATGGACAGCCATTGTATCACTCCTCCAG
TTCAACGCTCGCAAATCAAGCTAGGACGATGGCAACTGTCAAGACTGATA
CCACTGCGACCGAGCCCAAGAGCGAAAGTATCACCCTTCGAGTCAAGGAT
CAGACAGGGGAGGAAACCATGTTTAAGATGAAAAAGACAAACATTGACGT
CATGCTCGAGCAGCTGGGAGGGTGCTAGCGCATCGAGAAGCACCAGACGT
CCGCTGAGCTAGAGCTGGAGGATGAAGATCAGGTCAAGAAAACTACCAAG
ATGGAGAAGGTGTTTGCTTCCTACGCCGGGCGGAAGGGCGTGAACGTGGA
TTCCTTGCGGTTTTTACTGGATGGACAGCCATTGTATCACTCCTCCAGTT
CAACGCTCGCAAATCAAGCTAGGACGATGGCAACTGTCAAGACTGATACC
ACTGCGACCGAGCCCAAGAGCGAAAGTATCACCCTTCGAGTCAAGGATCA
GACAGGGGAGGAAACCATGTTTAAGATGAAAAAGACAAAC
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Synonyms
Publications