EWM29451.1, cds1228 (CDS) Nannochloropsis gaditana

Overview
NameEWM29451.1
Unique Namecds1228
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:106163..106177 -
Alignment locationCM002457.1:105513..105659 -
Alignment locationCM002457.1:105192..105287 -
Alignment locationCM002457.1:104892..104945 -
Alignment locationCM002457.1:104769..104804 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29451.1
Productsmall ubiquitin-like modifier
Orig transcript idgnl|cribi|Naga_100083g7.6778.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:106163..106177 -
CM002457.1supercontigCM002457.1:105513..105659 -
CM002457.1supercontigCM002457.1:105192..105287 -
CM002457.1supercontigCM002457.1:104892..104945 -
CM002457.1supercontigCM002457.1:104769..104804 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR022617Rad60/SUMO-like_dom
IPR000626Ubiquitin-like
Homology
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|585111987|gb|EWM29451.1| (small ubiquitin-like modifier [Nannochloropsis gaditana])

HSP 1 Score: 236.498 bits (602), Expect = 5.627e-79
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
Query:    1 MKKTNPLYHSSSSTLANQARTMATVKTDTTATEPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGGC 115
            MKKTNPLYHSSSSTLANQARTMATVKTDTTATEPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGGC
Sbjct:    1 MKKTNPLYHSSSSTLANQARTMATVKTDTTATEPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGGC 115          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|219119533|ref|XP_002180525.1| (small ubiquitin-like modifier [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407998|gb|EEC47933.1| small ubiquitin-like modifier [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 117.857 bits (294), Expect = 3.825e-32
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 0
Query:   36 SESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            +ESIT+RV+DQTGEET FK+KKTTKM+KVF +YA RKGV V+SLRFLLDG RI   QT   LELED+DQID +LEQ GG
Sbjct:   14 AESITVRVRDQTGEETFFKIKKTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLELEDQDQIDCVLEQTGG 92          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|1173929736|gb|OQR82913.1| (small ubiquitin-like modifier (SUMO) [Achlya hypogyna])

HSP 1 Score: 117.472 bits (293), Expect = 4.066e-32
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0
Query:   33 EPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGGC 115
            E K ++IT+RVKDQ+GEET FKVK  TKMEK+F++YA RKGV V +LRFLLDG RI   QT   LELED+DQID  LEQ+GGC
Sbjct:   13 EDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVSALRFLLDGTRIAPDQTPKMLELEDQDQIDCALEQVGGC 95          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|1072237719|gb|OEU22446.1| (small ubiquitin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 116.701 bits (291), Expect = 7.870e-32
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 0
Query:   31 ATEPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            A E K+E IT+RV+DQTGEET FK+KK+TKM KVF +YA RKGV + SLRFLLDG+RI +  T  +LEL+D+DQID MLEQ GG
Sbjct:   10 APEAKNEPITIRVRDQTGEETFFKIKKSTKMSKVFNTYAQRKGVQMSSLRFLLDGERIAETMTPQDLELDDQDQIDCMLEQSGG 93          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|669164958|ref|XP_008618041.1| (hypothetical protein SDRG_13722 [Saprolegnia diclina VS20] >gi|813177535|ref|XP_012205237.1| hypothetical protein SPRG_10888 [Saprolegnia parasitica CBS 223.65] >gi|530730151|gb|EQC28393.1| hypothetical protein SDRG_13722 [Saprolegnia diclina VS20] >gi|641529953|gb|KDO24101.1| hypothetical protein SPRG_10888 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 116.701 bits (291), Expect = 9.619e-32
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0
Query:   33 EPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGGC 115
            E K ++IT+RVKDQ+GEET FKVK  TKMEK+F++YA RKGV V +LRFLLDG RI   QT   LELED+DQID  LEQ+GGC
Sbjct:   14 EDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVTALRFLLDGTRIAADQTPKMLELEDQDQIDCALEQVGGC 96          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|397570712|gb|EJK47429.1| (hypothetical protein THAOC_33854 [Thalassiosira oceanica])

HSP 1 Score: 119.783 bits (299), Expect = 1.053e-31
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 0
Query:   36 SESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            +E IT+RVKDQTGEETMFKVKKTTKM+K+F +YA RKGV+  SLRFLLDG RI+  QT   LELEDEDQID +L Q+GG
Sbjct:   12 NEPITIRVKDQTGEETMFKVKKTTKMQKIFGAYAQRKGVDPSSLRFLLDGDRIQGDQTPKMLELEDEDQIDCVLAQMGG 90          

HSP 2 Score: 99.7525 bits (247), Expect = 5.780e-24
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   30 TATEPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGV--------------------NVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            T  E  SE +T+RVKDQ GEETMFK+KK+T+++KVFA+YA RKGV                    N   +RF+LDG+ IE   T  +L+LED DQID  L Q+GG
Sbjct:   95 TKPEGGSEQLTIRVKDQNGEETMFKIKKSTRLKKVFAAYAARKGVEASASESFCSSITCVSFCFLNPSEVRFMLDGENIEPDSTPGDLDLEDNDQIDCFLAQVGG 199          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|953488195|emb|CEG48212.1| (Ubiquitin-like proteins [Plasmopara halstedii])

HSP 1 Score: 116.701 bits (291), Expect = 1.510e-31
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 0
Query:   35 KSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            K+E+IT+RVKDQ+GEET FKVK  TKMEK+F++YA RKGV V +LRFLLDG RI   QT   LELED+DQID  LEQ+GG
Sbjct:   29 KTEAITIRVKDQSGEETFFKVKPNTKMEKIFSAYAQRKGVPVSALRFLLDGTRISGDQTPKMLELEDQDQIDCALEQVGG 108          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|1210512726|dbj|GAX28316.1| (small ubiquitin-related modifier [Fistulifera solaris] >gi|1210527772|dbj|GAX13529.1| small ubiquitin-related modifier [Fistulifera solaris])

HSP 1 Score: 114.775 bits (286), Expect = 3.556e-31
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0
Query:   33 EPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            EP  +++T+R++DQ GEET FK+KKTTKM+KVF +YA RKG+ + SLRFLLDG+R+E   T   LELED+DQID MLEQ GG
Sbjct:    6 EPNPDALTIRIRDQQGEETFFKIKKTTKMQKVFETYATRKGLQIASLRFLLDGERVEPTSTPKMLELEDQDQIDCMLEQAGG 87          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|695433444|ref|XP_009531178.1| (hypothetical protein PHYSODRAFT_355014 [Phytophthora sojae] >gi|348673930|gb|EGZ13749.1| hypothetical protein PHYSODRAFT_355014 [Phytophthora sojae])

HSP 1 Score: 114.775 bits (286), Expect = 5.727e-31
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 0
Query:   35 KSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            K+E+IT+RVKDQ+GEET FKVK  TKMEK+F++YA RKGV   +LRFLLDG RI   QT   LELED+DQID  LEQ+GG
Sbjct:   20 KAEAITIRVKDQSGEETFFKVKPNTKMEKIFSAYAQRKGVPASALRFLLDGTRISGDQTPKMLELEDQDQIDCALEQVGG 99          
BLAST of EWM29451.1 vs. NCBI_GenBank
Match: gi|1214690574|gb|OWZ05755.1| (Small ubiquitinlike modifier (SUMO) protein [Phytophthora megakarya])

HSP 1 Score: 114.39 bits (285), Expect = 6.724e-31
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 0
Query:   35 KSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
            K+E+IT+RVKDQ+GEET FKVK  TKMEK+F++YA RKGV   +LRFLLDG RI   QT   LELED+DQID  LEQ+GG
Sbjct:   19 KAEAITIRVKDQSGEETFFKVKPNTKMEKIFSAYAQRKGVPASALRFLLDGTRISGDQTPKMLELEDQDQIDCALEQVGG 98          
The following BLAST results are available for this feature:
BLAST of EWM29451.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111987|gb|EWM29451.1|5.627e-79100.00small ubiquitin-like modifier [Nannochloropsis gad... [more]
gi|219119533|ref|XP_002180525.1|3.825e-3272.15small ubiquitin-like modifier [Phaeodactylum trico... [more]
gi|1173929736|gb|OQR82913.1|4.066e-3267.47small ubiquitin-like modifier (SUMO) [Achlya hypog... [more]
gi|1072237719|gb|OEU22446.1|7.870e-3266.67small ubiquitin-like protein [Fragilariopsis cylin... [more]
gi|669164958|ref|XP_008618041.1|9.619e-3267.47hypothetical protein SDRG_13722 [Saprolegnia dicli... [more]
gi|397570712|gb|EJK47429.1|1.053e-3172.15hypothetical protein THAOC_33854 [Thalassiosira oc... [more]
gi|953488195|emb|CEG48212.1|1.510e-3168.75Ubiquitin-like proteins [Plasmopara halstedii][more]
gi|1210512726|dbj|GAX28316.1|3.556e-3163.41small ubiquitin-related modifier [Fistulifera sola... [more]
gi|695433444|ref|XP_009531178.1|5.727e-3167.50hypothetical protein PHYSODRAFT_355014 [Phytophtho... [more]
gi|1214690574|gb|OWZ05755.1|6.724e-3167.50Small ubiquitinlike modifier (SUMO) protein [Phyto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1229rna1229Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications