rna1228, rna1228 (mRNA) Nannochloropsis gaditana

Overview
Namerna1228
Unique Namerna1228
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length321
Alignment locationCM002457.1:104399..104744 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100083g8.6788.mrna
Orig protein idgnl|cribi|Naga_100083g8.6788
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:104399..104744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g8gene1183Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1228rna1228-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29461.1cds1227Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1228 ID=rna1228|Name=rna1228|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
ATGTCCGGAAGAAAGAGATGGCGCCCACGAGTATGGGGTCGAATACATGT
ACTGATACACTTTGGAGTGGATTTTGTTACTGGGAATGTGAGCAGGAGAA
GATACCTCTCAAGTGAAGGTGGGAGGGCTTTCGGAGGGGTAGAGGCCTTG
GCACAGATGCCTCCCGAAAGGGTTAACCAAAGCAAAGGGAAGGGCAGCAA
GGGGGAGTGTGCGGATATGAAAGAAGCATTTTCCGACAAACGGGCAAGAA
GACAAGAAGGGGAGAGCAAGGGGAAGAAATGGAACGAGGAGAAGAGAGGC
CGGAGGGAAAGCGATGCGTGA
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protein sequence of rna1228

>rna1228-protein ID=rna1228-protein|Name=rna1228|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MEGMALHRSLGPGRRMGREEAREEAPRNGGKIGRQRWSHGTGEESIRWGD
LQGYVKARGRARVCAREREWRKERLPVWKVERERKRERARGR
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mRNA from alignment at CM002457.1:104399..104744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1228 ID=rna1228|Name=rna1228|organism=Nannochloropsis gaditana|type=mRNA|length=346bp|location=Sequence derived from alignment at CM002457.1:104399..104744- (Nannochloropsis gaditana)
ATGGAAGGCATGGCCCTTCACCGGAGTCTAGGACCAGGGAGGAGGATGGG
GAGGGAGGAAGCGAGGGAGGAAGCGTGGGAGGGCGGGGCGTGAAGGAAGA
AGGGGGCGTGGCACTTTGACGGTACGGAGAGTAGATATAAGGCCACGGAA
TGGAGGGAAAATAGGGAGGCAACGTTGGAGTCACGGGACAGGGGAAGAGT
CCATCCGGTGGGGAGACTTGCAGGGGTATGTGAAGGCGAGAGGCAGAGCG
AGAGTATGTGCGAGGGAGAGAGAATGGAGGAAAGAGAGATTGCCCGTGTG
GAAAGTAGAGAGAGAAAGAAAGAGAGAGAGAGCAAGAGGGAGATAG
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Coding sequence (CDS) from alignment at CM002457.1:104399..104744-

>rna1228 ID=rna1228|Name=rna1228|organism=Nannochloropsis gaditana|type=CDS|length=558bp|location=Sequence derived from alignment at CM002457.1:104399..104744- (Nannochloropsis gaditana)
GCCACGGAATGGAGGGAAAATAGGGAGGCAACGTTGGAGTCACGGGACAG
GGGAAGAGTCCATCCGGTGGGGAGACTTGCAGGGGTATGTGAAGGCGAGA
GGCAGAGCGAGAGTATGTGCGAGGGAGAGAGAATGGAGGAAAGAGAGATT
GCCCGTGTGGAAAGTAGAGAGAGAAAGAAAGAGAGAGAGAGCAAGAGGGA
GATAGATGGAAGGCATGGCCCTTCACCGGAGTCTAGGACCAGGGAGGAGG
ATGGGGAGGGAGGAAGCGAGGGAGGAAGCGCCACGGAATGGAGGGAAAAT
AGGGAGGCAACGTTGGAGTCACGGGACAGGGGAAGAGTCCATCCGGTGGG
GAGACTTGCAGGGGTATGTGAAGGCGAGAGGCAGAGCGAGAGTATGTGCG
AGGGAGAGAGAATGGAGGAAAGAGAGATTGCCCGTGTGGAAAGTAGAGAG
AGAAAGAAAGAGAGAGAGAGCAAGAGGGAGATAGATGGAAGGCATGGCCC
TTCACCGGAGTCTAGGACCAGGGAGGAGGATGGGGAGGGAGGAAGCGAGG
GAGGAAGC
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Synonyms
Publications